Rice P450s status of annotation

In this table I = indica strain, J = japonica strain

Name seq. is full seq. is partial no sequence number of introns/phase checked

CYP51G1 I J 1/0

CYP51G3 I/J 1/1

CYP51G4P I/J pseudogene with deletions, frameshifts

CYP51H1 J I 1/0

CYP51H2P I/J Japonica seq is more complete no introns

CYP51H3 I/J 1/0 1 frameshift in both I/J

CYP51H4 J I 1/0

CYP51H5 J I 1/1

CYP51H6 J I 2/0

CYP51H7 J I 1/0

CYP51H8 J I 1/0

CYP51H9 J I 2/2

CYP71C12 I/J no introns

CYP71C13P J I numerous stop codons no introns

CYP71C14 I/J no introns

CYP71C15 J I 1/1

CYP71C16 J I 1/1

CYP71C17 I/J 1/1

CYP71C18 J I 2/2

CYP71C19 J I 2/2

CYP71C20 I/J no introns

CYP71C21 I J 3/0

CYP71C22P I/J pseudogene fragment

CYP71C23P I/J pseudogene fragment

CYP71E4 I/J 2/2

CYP71E5 I/J 2/2

CYP71E6 J I 2/0

CYP71K1 J I 1/0

CYP71K2P I J pseudogene fragment

CYP71K3 J I 1/1

CYP71K4 J I 1/1

CYP71K5 J I 1/1

CYP71K6 J I possible pseudogene 1/1 bad boundary

CYP71K7P I/J pseudogene 1/1 bad boundary

CYP71K8 J I 1/1

CYP71K9 I/J 1/1

CYP71K10 I/J 1/1

CYP71K11 I/J 2/2

CYP71K12 I/J 2/2

CYP71K13P J I pseudogene fragment

CYP71P1 I/J 1/1

CYP71P2P I/J pseudogene fragment

CYP71Q1 J I 2/2

CYP71Q2 J I 2/2

CYP71Q3P I/J pseudogene fragment

CYP71Q4P I/J pseudogene fragment

CYP71R1 I/J 1/1

CYP71R2P I/J pseudogene 2/1??

CYP71R3 I J no whole seq known

CYP71S1 J I 1/1

CYP71S2 J I 1/1

CYP71T1 I/J 1/1

CYP71T2 J I 1/1

CYP71T3 J I 1/1

CYP71T4 I/J 1/1

CYP71T5 I J 1/1

CYP71T6 I J no whole seq known

CYP71T7 I J 1/0

CYP71T8X J I 55% to 71Z12X = 71Z11X = 71AK1

CYP71T9X J I = 71AK1 frag

CYP71T10P I J probable pseudogene

CYP71U1P I J probable pseudogene

CYP71U2 I J 1/1

CYP71U3 J I 1/0

CYP71V1 J I 1/1

CYP71V2 I J 1/0

CYP71V3 J I 1/0

CYP71V4 I J 1/1

CYP71V5 I J 1/1

CYP71V6P I J pseudogene fragment

CYP71W1 I J 1/1

CYP71W2P I/J pseudogene fragment

CYP71W3 I/J 1/1

CYP71W4 I/J 1/1

CYP71W5P J I pseudogene fragment

CYP71W6P J I pseudogene fragment

CYP71X1P I/J PSEUDOGENE

CYP71X2 J I 1/1

CYP71X3 J I 2/1??

CYP71X4 J I 1/1

CYP71X5 J I 1/1

CYP71X6 I/J 1/1

CYP71X7 I/J 1/1

CYP71X8 I/J 1/1

CYP71X9P I/J pseudogene fragment

CYP71X10 J I 1/1

CYP71X11 I/J 1/1

CYP71X12 I/J 1/1

CYP71X13P J I pseudogene

CYP71X14 I/J 1/1

CYP71X15 I J 1/1

CYP71X16 I J no whole seq known

CYP71X17P I J probable pseudogene

CYP71Y1 J I 2/1

CYP71Y2P I/J pseudogene fragment

CYP71Y3 J I 1/1

CYP71Y4 J I 1/1

CYP71Y5 J I 1/1

CYP71Y6 J I 1/1

CYP71Y7 J I 1/1

CYP71Y8 I J 1/1

CYP71Y9P I J probable pseudogene

CYP71Z1 J I 1/1

CYP71Z2 J I 1/1

CYP71Z3 I/J 1/1

CYP71Z4 I/J 1/1

CYP71Z5 I/J 1/1

CYP71Z6 I J 1/1

CYP71Z7 I/J 1/1

CYP71Z8 J I 1/1

CYP71Z9/Z10 I J no whole seq known two joined

CYP71Z11X J I = 71T8X rename CYP71AK1

CYP71Z12X J I NEW SUBFAM CYP71AK2

CYP71AA1P I/J pseudogene fragment

CYP71AA2 J I 1/1

CYP71AA3 I/J 1/1

CYP71AA4P I/J pseudogene fragment

CYP71AA5 I J no whole seq known

CYP71AB1 I/J 1/1

CYP71AB2 J I 1/1

CYP71AB3 I/J 1/1

CYP71AC1 I/J 1/1

CYP71AC2 I/J 1/1

CYP71AC3P I J pseudogene fragment

CYP71AC4X I J = 71AC3P END

CYP71AC5P J I pseudogene fragment

CYP71AC6P J I pseudogene fragment

CYP71AC7P I J pseudogene fragment

CYP71AD1 J I no introns

CYP71AE1 I J 2/2

CYP71AE2 J I 2/1

CYP71AF1 J I 1/1

CYP71AG1 I J no whole seq known

CYP71AK1 J I old 71T8 old 71Z11

CYP71AK2 J I = old 71Z12

Summary of CYP51 and CYP71 families

130 sequences identified (29% of total gene count)

approximately 30 are pseudogenes (23%)

(in whole collection about 99 pseudogenes/454 total sequences = 22% pseudogenes

not counting the pseudogenes, 6/100 sequences are partial and might be

from intact genes, but some of these may also be pseudogenes.

Most non-pseudogene sequences (94/100) are complete in indica or japonica

and some are complete in both.

name seq. is complete seq incomplete no seq. number of introns/checked boundaries

CYP72A17 J I 4/4

CYP72A18 J I 4/4

CYP72A19 J I 3/3

CYP72A20 J I 4/4

CYP72A21 J I 3/3

CYP72A22 J I 3/3

CYP72A23 J I 3/3

CYP72A24 J I 4/4

CYP72A25 J I 4/4

CYP72A31P I/J pseudogene

CYP72A32 J I 3/3

CYP72A33 J I 3/3

CYP72A34 J I 4/2

CYP72A35 J I 4/0

CYP72A36P I/J pseudogene

CYP72A37P I/J pseudogene

CYP72A38P J I pseudogene

CYP73A35P I/J pseudogene

CYP73A38 I J 2/2

CYP73A39 I/J 1/1

CYP73A40 I/J 1/1

CYP74A4 J I no introns

CYP74A5 J I no introns

CYP74E1 J I 1?/0

CYP74E2 J I 1?/0

CYP74E3P I J pseudogene

CYP74F1 J I no introns

CYP75A11 J I 2/0

CYP75B3 I/J 1/0

CYP75B4 J I 1/1

CYP76H4 I/J 1/1

CYP76H5 J I 1/1

CYP76H6 J I 1/0

CYP76H7 I/J no whole seq. known

CYP76H8 J I 1/0

CYP76H9 J I 1/1

CYP76H10 J                   &nbs