330 japonica Rice P450 sequences sorted by clan and family. 
There are 155 indica P450 sequences.  There are 9 P450 
clans in plants. CYP727A1 is currently not classified to a clan.
Last modified Aug. 12, 2002 there are now over 250 full length japonica P450s in 
this set.  $F means seq is complete $P means pseudogene fragment is already maximal size.  
226 $F + 64 $P = 285 finished japonica sequences or pseudogene fragments
40 partial japonica sequences need new sequence data not yet in Genbank to complete.
Clan  Members

51    51
71    71, 73, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 89, 92, 93, 97, 98, 99
      701, 703, 705, 706, 712 (712 = a 705 subfamily), 719? 723?
72    72, 709, 714, 715, 721
74    74
85    85, 87, 88, 90, 702, 707, 708, 716, 718, 720, 722, 724, 725
86    86, 94, 96, 704
97    97
710   710
711   711

545 indica sequence fragments and their best rice matches from japonica or indica
Some accessions join in a single sequence, so there are 531 sequences represented.
Some of these appear to be exact duplications and they are probably errors.
i = incomplete seq $FI = full length indica seq $PI = pseudogene indica

AAAA01000117.1   i  orth AC092557.2  $F chr 3
AAAA01000147.1   i  orth AC087182.8  $F chr 10 100% 86B like
AAAA01000152.1  $FI orth AP003765.1  $F        98% CYP727A1 
AAAA01000178.1  $FI orth AP004142.1  $F chr 8 >99% 1 aa diff,  similar to 709A1 
AAAA01000236.1   i  orth AL606687.1  $F chr 4 100%
AAAA01000238.1a $FI orth AP003909.1f $F       >99% 2 aa diffs (7 genes)
AAAA01000238.1b $FI orth AP003909.1e $F chr 8 100% 55% to 71C4  (7 genes)
AAAA01000238.1c $FI orth AP003909.1d $F        99% (7 genes)
AAAA01000238.1d $FI orth AP003909.1f $F        99% (7 genes)
AAAA01000238.1e $FI orth AP003909.1c $F        99% (7 genes)
AAAA01000238.1f $FI orth AP003909.1a $F        99% (7 genes)
AAAA01000238.1g $PI orth AP003909.1b $P        89% (7 genes)
AAAA01000245.1  $FI orth AP004051.1  $F chr 7 >99% 2 aa diffs, similar to AP003850
AAAA01000275.1   i  orth AC087550.2  $F chr 10 100%
AAAA01000381.1a $FI not an exact match         70% to AP003850.1i (2 genes) 
AAAA01000381.1b $FI not an exact match         82% to AP003850.1f (2 genes) 
AAAA01000393.1  $FI not an exact match         90% to AP005114.1b chromosome 2
AAAA01000394.1   i  orth AP004704.1  $F chr 8 >99% 2 aa diffs, 61% to 78A9
AAAA01000436.1a  i  orth AQ576451     i        93% in 100 aa fragment (2 genes)
AAAA01000436.1b $PI not an exact match         75% to AL607001.1 gene 2 (2 genes)
AAAA01000478.1a  i  orth AL607001.1 gene 2 $F chr 4
AAAA01000478.1b  i  orth AL607001.1 gene 1 $F chr 4
AAAA01000493.1a $PI orth AP005254.1c chr 8    100% (3 pseudogenes) deletion at I-helix
AAAA01000493.1b $PI orth AP005254.1d chr 8     99% (3 pseudogenes) 1 aa diff
AAAA01000493.1c $PI orth AP005254.1d chr 8    100% (3 pseudogenes)
AAAA01000559.1  $FI orth AP003434.1a $F chr 1  98%  41% to 71A24 = C98812
AAAA01000575.1  $FI not an exact match         74% to AP003523.1 chr 6 
AAAA01000680.1a  i  orth AP003735.2b i  chr 1 100% to C-term (2 genes +3 frags)
AAAA01000680.1b $FI orth AP003735.2a $F chr 1  99% (2 genes +3 frags)
AAAA01000680.1c $FI orth AP003735.2b $F chr 1  99% (2 genes +3 frags)
AAAA01000680.1d  i  orth AP003735.2b i  chr 1 100% to C-term (2 genes +3 frags)
AAAA01000680.1e  i  orth AP003735.2b i  chr 1 100% to C-term (2 genes +3 frags)
AAAA01000733.1  $FI orth AC092559.2  $F chr 3  99% similar to 71B3
AAAA01000805.1a  i  orth AC087544.2  $F chr10 100% to first 312 aa then a seq gap
AAAA01000805.1b  i  orth AC087544.2  $F chr10 100% to first 46 aa duplication
AAAA01000831.1  $FI orth AP004684.1a $F chr 6 >99% 1 aa diff
AAAA01000843.1  $FI not an exact match         46% to AP004000.1 $F chr 2 63% to AAAA01005635.1
AAAA01000851.1   i  not an exact match $P      84% to AC074282.1
AAAA01000893.1   i  not an exact match         49% to AP003434.1 $F chromosome 1, like 71A
AAAA01000919.1   i  orth AC073556.1  $F       100% CYP86
AAAA01000965.1a $PI not an exact match         80% to AC074282.1 $P chromosome 10 
AAAA01000965.1b $PI not an exact match         79% to AC074282.1 $P chromosome 10
AAAA01000965.1c $PI not an exact match         80% to AC074282.1 $P chromosome 10
AAAA01000965.1d $PI not an exact match         79% to AC074282.1 $P chromosome 10
AAAA01000965.1e $PI not an exact match         80% to AC074282.1 $P chromosome 10
AAAA01000965.1f $PI not an exact match         55% to AP003232.1 $P chromosome 1
AAAA01001005.1   i  orth AL606588.1  $F chr 4
AAAA01001026.1a $PI orth AP003523.1d $F chr 6  97% (4 genes)
AAAA01001026.1b $PI orth AP003523.1e $F chr 6  95% to N and C-term part
AAAA01001026.1c $FI orth AP003523.1f $F chr 6  95% 
AAAA01001026.1d $FI orth AP003571.1  $F chr 6  99% continuation of contig AP003523.1
AAAA01001134.1a  i  orth AC116949.3  $F chr 11
AAAA01001134.1b  i  orth AC116949.3  $F chr 11
AAAA01001195.1a  i  orth? AP003378.1 $F chr 1  96% 4 diffs
AAAA01001195.1b  i  orth? AP003378.1 $F chr 1  97% 3 diffs
AAAA01001209.1   i  orth AL662933.1  $F chr 4  99%, 63% to 99A1 sorghum
AAAA01001213.1      orth AP004028.1  $F chr 2  99%
AAAA01001279.1   i  orth AC087597.1c i        100% in 54 aa, 1 aa diff with AP005302.1a
AAAA01001325.1      orth AP003822.1  $F chr 7
AAAA01001427.1   i  orth AP002484a   $F        99%
AAAA01001441.1      orth AP004129.1  $F chr 2
AAAA01001473.1   i  orth AP002899    $F        99%
AAAA01001474.1  $PI orth AP003927.1  $P chr 7 100% pseudogene fragment related to CYP92A
AAAA01001499.1      not an exact match         85% to AP004181.1 $F
AAAA01001606.1a  i  orth AC078944.5b $F       >99% join with AAAA01032734.1
AAAA01001606.1b  i  orth AC078944.5a $P        99% join with AAAA01026521.1
AAAA01001621.1a $FI orth AC092749.1  $F chr10 >99%
AAAA01001621.1b $PI orth AC092749.1a $P chr10  99% 1 aa diff
AAAA01001626.1  $FI not an exact match         72% to AP005448.1b $F chr 7, 53% to 51A2
AAAA01001667.1a $FI orth AC118672.1b $F        95% (most variation in one segment)
AAAA01001667.1b  i  orth AC118672.1a $F       >99% 
AAAA01001707.1a $FI orth C73729 107aa i        96% C-TERM 439-507 join with AAAA01010113.1
AAAA01001707.1b  i  orth AC079935.3  $F        99% 2 aa diffs N-TERM aa 1-262
AAAA01001707.1c  i  orth AC079935.3  $F        98% aa 148-507
AAAA01001712.1  $PI not an exact match         79% to AP004000.1 $F chromosome 2
AAAA01001902.1  ortholog of AC087192 $F
AAAA01001928.1       89% AP003711.1  $F 4 diffs
AAAA01002000.1  $FI orth AP004688.1  $F chr 6  99% 
AAAA01002047.1a $FI orth AP004000.1a $F chr 2  99% (4000 region of AAAA01002047)
AAAA01002047.1b $FI orth AP003990.1a $F chr 2  99% (17000 region of AAAA01002047)
AAAA01002047.1c $PI orth AP003990.1b $P chr 2  99% (22000 region of AAAA01002047)
AAAA01002066.1  $PI orth AP003434.1b $F chr 1  99%  = AA754300
AAAA01002142.1a  orth of AP003514.1  $F chromosome 6 97%
AAAA01002142.1b   60% to AP003752.1c $F like 709B
AAAA01002164.1a $FI orth AC084282.1b $F       100% 46% to 81D5 (3000 region of AAAA01002164)
AAAA01002164.1b $FI orth AC084282.1c $F       100% 41% to 81H1 (8000 region)
AAAA01002164.1c $FI orth AC084282.1d $F        99% 40% to 81H1 EST D46694, D46695 (12000 region)
AAAA01002175.1  orth of AC099043.1 $F chromosome 3 100%
AAAA01002200.1  $PI orth AC087599.11 $P chr 10 94% pseudogene fragment like 71A1
AAAA01002235.1  orth to AL607001.1 gene 3 chr 4 CYP87 like 
AAAA01002256.1a orth CYP72A24 $F AP002839 chr 1 100%
AAAA01002256.1b orth CYP72A25 $F AP002839 2 diffs
AAAA01002274.1a  i  orth AP003805.1  $F chr 7 100% (1800 region)
AAAA01002274.1b  i  orth AP003805.1  $F chr 7 100% (22000 region) exact duplicate of 1a
AAAA01002288.1  $FI not an exact match         65% to AP003434.1c $F AU163704.1
AAAA01002303.1   = AAAA01000575.1 (indica cultivar-group) duplicate
AAAA01002376.1  $FI orth AQ256364.1  i        100% 
AAAA01002439.1      orth AP004092.1  $F chromosome 2
AAAA01002589.1    73% to AP003244    $F similar to CYP90D
AAAA01002599.1a $FI orth AP004326.2c $F chr 1  99% (11000 region) 
AAAA01002599.1b $FI orth AP004326.2b $F chr 1 >99% 2 diffs (20000 region)
AAAA01002645.1a $PI orth AP005385.1b $P        99% (700 region)
AAAA01002645.1b $FI orth AP005385.1a $F        99% (2000 region)
AAAA01002713.1  $FI orth AL772426.1  $F        98%
AAAA01002757.1   orth of AC104473.1 chr 3 77% to 90B
AAAA01002827.1  $FI not an exact match         51% to AC118672.1a $F
AAAA01002847.1a $FI orth AC087550.2a $F chr 10 99% (12000 region )
AAAA01002847.1b $FI orth AC087550.2b $F chr 10 99% (18000 region )
AAAA01002889.1   i  orth AL606442.1  $F chr 4 >99% 1 diff and small seq gap
AAAA01002943.1      orth AP003232.1h $F chr 1 98%
AAAA01002989.1  $FI not an exact match         91% to AP004233.1 $F chr 1
AAAA01002996.1a $FI orth AP004000.1d $F chr 2 >99% (14000 region)
AAAA01002996.1b $FI orth AP004000.1e $F chr 2  99% (17000 region)
AAAA01003020.1  $PI orth AP004796.1  $P chr 6 100% also AP004991.1 100%
AAAA01003099.1a $PI orth AP005448.1a $P       100%
AAAA01003099.1b $PI orth AP005448.1b $F       100% may be assembly error duplication
AAAA01003099.1c $PI orth AP005448.1b $F       100% may be assembly error duplication
AAAA01003099.1d $PI orth AP005448.1b $F       100% may be assembly error duplication
AAAA01003099.1e  i  orth AP005448.1b $F        99% missing N-term off end of cosmid
AAAA01003110.1  $FI orth AC073867.4  $F chr 10 99%  63% to CYP84A
AAAA01003137.1  $FI orth AU173996.1  i        100%
AAAA01003187.1a  orth of AP003278 $F chr 1, 82% to 72A22 these two seem identical
AAAA01003187.1b  orth of AP003278 $F chr 1, 82% to 72A22 these two seem identical
AAAA01003216.1a  i  orth AP005570.1a          >99% (2000 region)
AAAA01003216.1b  i  orth AP005570.1c          >99% (6000 region)
AAAA01003216.1c  i  orth AP005570.1b          >99% (9000 region)
AAAA01003216.1d $FI orth AP005570.1c          >99% (12000 region) b = d duplication
AAAA01003237.1a  77% to AP003850.1  $F chr 7 gene 2
AAAA01003237.1b orth of AP003850.1  $F chr 7 gene 3 97% or higher
AAAA01003237.1c  73% to AP003850.1  $F chr 7 gene 2
AAAA01003239.1a $PI orth AP004346.1c $P        96% (2000 region)
AAAA01003239.1b  i  orth AP004346.1b $F        95% (17000 region)
AAAA01003282.1   87% to AL607001.1 chr 4, gene 2
AAAA01003340.1  $FI orth D48181      i         99% (less the N-term)
AAAA01003402.1   orth of AP000616.1 $F chr 6 like CYP88
AAAA01003423.1    55% to AP003244 $F
AAAA01003438.1  $FI orth AP003723.1  $F chr 6 100% join with AAAA01022256.1 60% to CYP77B1
AAAA01003512.1   i  orth AP004346.1a           95%
AAAA01003531.1   orth of AC090482.3 $F join with aaaa01006865.1 aaaa01028153.1  aaaa01094999.1 
AAAA01003554.1   i  orth AP005285.1  gene 4    98%
AAAA01003568.1  $FI orth AP005175.1  $F chr 7  99%  CYP78A11
AAAA01003683.1      orth AP000391    $F 1 diff
AAAA01003782.1  $FI orth AC068924.9a $F        99% 5 diffs in two locations
AAAA01003818.1    86% to AP003289 $F similar to 94C1
AAAA01003868.1  $FI orth AP004769.1  $F       100% 45% to 89A4
AAAA01003879.1  $FI orth AP004757.1  $F chr 6  97%
AAAA01003917.1  $FI orth D39760       i       100% with one 7 aa frameshifted region
AAAA01004037.1  $FI orth AL732378.3  $F        99%
AAAA01004091.1   orth of AC108875.1c $F chr 5 similar to 51A2
AAAA01004178.1a $FI orth AP003752.1e $F chr 7  97%
AAAA01004178.1b $FI orth AP003752.1b $F chr 7  99%
AAAA01004178.1c  i  orth AP003752.1c $F chr 7 100% some seq. gaps
AAAA01004200.1   AP003575.1 $F chromosome 6
AAAA01004251.1 ortholog of AQ157412 contig
AAAA01004255.1 ortholog of 73A35P
AAAA01004333.1 $PI orth AP004013.1 $P chr 8 98% 1 diff
AAAA01004359.1 ortholog of AQ577123
AAAA01004378.1    orth AC116603.1 $F chr 10, 97%
AAAA01004390.1 not an exact match 74% to aaaa01012488.1 $F CYP78A
AAAA01004413.1 orth to AP002092 $F 100%
AAAA01004425.1a  i  orth AL662964.1b $F chr 4       (5000 region)
AAAA01004425.1b  i  orth AL662964.1a $F chr 4  99% (12000 region)
AAAA01004457.1  $FI not an exact match         56% to 94B3 
AAAA01004481.1      orth AP003612.1  $F chr 6 100%
AAAA01004523.1   orth AL606448.1 $P two short pseudogene fragments 1 diff
AAAA01004558.1 96% to AAAA01013573.1a
AAAA01004597.1a ortholog to BI808700.1 
AAAA01004597.1b missing N-term 42% to 76C4 89% to N-term of AU172561.1 
AAAA01004604.1 52% to 701A3 ortholog of AF088220 AP005302.1c
AAAA01004667.1a C-term fragment like AAAA01004667.1b
AAAA01004667.1b ortholog of AP003623.1  
AAAA01004834.1a ortholog of AP005285.1 gene 2
AAAA01004834.1b ortholog of AP005285.1 gene 3
AAAA01004834.1c ortholog of BI806420.1
AAAA01004950.1 ortholog to AP004811.1 99%
AAAA01005051.1    orth of AC083944.6 $F 99%
AAAA01005183.1      71% to AC083944.6 $F
AAAA01005294.1     orth of AC092778.2 $F chr 3 CYP85A like
AAAA01005413.1 ortholog of AL713951.1
AAAA01005438.1a  AC068924.9d $F 50% to 89A2 (3000 region)
AAAA01005438.1b  AC068924.9d $F 50% to 89A2 (7000 region)
AAAA01005438.1c  AC068924.9c $F 51% to 89A2 (10000 region)
AAAA01005438.1d  AC068924.9c $F 51% to 89A2 (14000 region)
AAAA01005521.1   orth AP003230.1 $P pseudogene fragment 100%
AAAA01005609.1  i  orth AC021892.5 $F chr 10 98%
AAAA01005635.1   not an exact match 62% to AAAA01000843.1
AAAA01005655.1   not an exact match 51% to AP005254.1a
AAAA01005681.1  i  orth AP003866.1a $F chr 7 >99%
AAAA01005693.1    53% to 74B2
AAAA01005737.1   not an exact match 63% to aaaa01013736.1 $F
AAAA01005754.1  i  orth AC074054.1b $P chr 10 99%
AAAA01005977.1    orth AP003258.2 $F chr 1, 1 diff
AAAA01006047.1  75% to Arab 97B3 ortholog of AU173808.1
AAAA01006067.14 78% to AC074282.1 $P 90% to aaaa01000965.1d $PI
AAAA01006093.1a CYP73 99% to AP004850.1b
AAAA01006093.1b CYP73 99% to AP004850.1a
AAAA01006105.1a  not an exact match 67% to AC096855.1 $F (1500 region)
AAAA01006105.1b  not an exact match 74% to AC096855.1 $F (5000 region)
AAAA01006105.1c  not an exact match 67% to AC096855.1 $F (12000 region)
AAAA01006146.1a  not an exact match 61% to D24290 $F (4000 region)
AAAA01006146.1b  not an exact match 76% to D24290 $F (13000 region)
AAAA01006146.1c  not an exact match 77% to D24290 $F (14000 region)
AAAA01006154.1   orth of AP003442.1 $F chr 1 86A like
AAAA01006229.1a i orth AC021892.5 $F chr 10  (2000 region) a identical to b
AAAA01006229.1b i orth AC021892.5 $F chr 10 (12000 region) a identical to b
AAAA01006291.1    64% to AQ865256.1
AAAA01006345.1  i not an exact match 77% to AC096855.1 $F
AAAA01006348.1   orth of AP003752.1 $F chr 7 100%
AAAA01006365.1   i  orth AC090873 $F >99% 47% to 89A4
AAAA01006398.1a  not an exact match 87% to AP003434.1 (2000 region)
AAAA01006398.1b  not an exact match 80% to AP003434.1 (5000 region)
AAAA01006398.1c  not an exact match 95% to AP003434.1 (10000 region)
AAAA01006398.1d  not an exact match 79% to AP003434.1 (13000 region)
AAAA01006486.1   i  orth AP003752.1e $F chr 7 99%
AAAA01006724.1   i  orth AP003434.1c $F chr 1 99% also AU163704.1 
AAAA01006859.1a  not an exact match 64% to AC068924.9b $F 49% to 89A2
AAAA01006859.1b  not an exact match 49% to AC068924.9h
AAAA01006865.1   orth of AC090482.3 $F join with aaaa01028153.1 aaaa01094999.1 aaaa01003531.1 
AAAA01007044.1   not an exact match 80% to AP003523.1
AAAA01007181.1a  i  orth AP003990.1h $F chr 2  99% (1000 region) N-term
AAAA01007181.1b  i  orth AP003990.1h $F chr 2 100% (7000 region) C-term
AAAA01007181.1c  i  orth AP003990.1i $F chr 2  99% (9000 region)
AAAA01007181.1d  i  orth AP003990.1j $F chr 2  99% (10000 region)
AAAA01007189.1 ortholog of AL662990.1
AAAA01007242.1   AP003575.1 $F chromosome 6
AAAA01007286.1   i  orth AP003571.1e $F chr 6 100%
AAAA01007309.1 65% to CYP711
AAAA01007330.1a   orth CYP72A18 $F AP002839 100%
AAAA01007330.1b   orth CYP72A17 $F AP002839 100%
AAAA01007399.1   i  orth AC105746.1 $F chr 10 >99%
AAAA01007431.1a  i  orth AP003990.1e $F chr 2 99% (5000 region)
AAAA01007431.1b  i  orth AP003990.1f $F chr 2 99% (9000 region)
AAAA01007506.1 orth AP003514.1 $F chromosome 6 99%
AAAA01007597.1   i  orth AL662934.1 $F chr 4 99%
AAAA01007665.1 ortholog of AC104708.1a BI305681.1
AAAA01007725.12 74% to AL607001.1 chr 4, gene 2
AAAA01007897.1   not an exact match 53% to AC105746.1
AAAA01008113.1   not an exact match 49% to AAAA01005655.1
AAAA01008150.1   orth of AP004139.1 $F chr 2, 86B like
AAAA01008155.1 orth AP003727.3 $P chromosome 1 100%
AAAA01008222.1a   not an exact match 82% AP003612.1 $F
AAAA01008222.1b   not an exact match 86% AP003612.1 $F
AAAA01008232.1   87% AC074282.1 $P
AAAA01008333.1a  not an exact match 81% to AP004000.1
AAAA01008333.1b  not an exact match 80% to AP004000.1
AAAA01008340.1   not an exact match 84% to aaaa01007189.1
AAAA01008385.1 ortholog of C72003 contig
AAAA01008405.1 top part of ortholog to BI813130.1
AAAA01008451.1a  i orth AC068924.9j $F 96%    48% to 89A2 (200 region)
AAAA01008451.1b  I orth AC068924.9i $F 94%    48% to 89A2 (9000 region)
AAAA01008685.1   orth of AC108875.1a $F chr 5 100%
AAAA01008816.1   orth of AP003289 $F 100% 94C like
AAAA01008885.1 almost the same as AAAA01011410.1
AAAA01008944.1  i  orth AP003523.1c $F chr 6 98%
AAAA01008990.1  i  orth AC099399.1  $F chr 3 100%  56% to 78A9
AAAA01009050.1a    orth AC082644 $F 100%
AAAA01009050.1b    orth AC082644.10 $F chr 3 100%
AAAA01009177.1a i       AP002968 $F 97% (600 region)
AAAA01009177.1b i  orth AP002968 $F 98% (2000 region) 40% to 71B24
AAAA01009188.1  ortholog to AU071096 
AAAA01009208.1 orth of AP002093 $F 100% 710A like
AAAA01009323.1   55% to AP005448.1b $F
AAAA01009404.1 orth of AP002484 $F 99%
AAAA01009485.1 ortholog of AC119289.1 AQ916317.1
AAAA01009673.1 orth AP003278 $P chromosome 1 96%
AAAA01009691.1 ortholog of AQ856705.1
AAAA01009744.1   AP005302.1d chromosome 6
AAAA01009800.1 $FI orth D48181 join with aaaa01003340.1
AAAA01009828.1 58% to CYP711
AAAA01009869.1  i  orth AP004684.1b $F chr 6  98%
AAAA01010028.1  i   ?   AC074105.1  $F chr 10 95%
AAAA01010030.1a i  orth AP003523.1a $F chr 6  99% (4000 region)
AAAA01010030.1b i  orth AP003523.1b $F chr 6  99% (6000 region)
AAAA01010030.1c i       AP003523.1a $F chr 6 100% (9000 region) 1 diff with 1a
AAAA01010047.1a
AAAA01010047.1b ortholog of AF140486 join with aaaa01002713.1
AAAA01010047.1c ortholog of BE039828
AAAA01010047.1d
AAAA01010047.1dca hypothetical hybrid
AAAA01010107.1    84% to AP003612.1 $F
AAAA01010113.1 ortholog of C73729 continues on AAAA01001707.1a
AAAA01010169.1    64% to AQ865256.1 56% to 714A1
AAAA01010199.1  i  orth AP004013.1 $P chr 8 95%   2 aa diffs
AAAA01010206.1     orth AC074232.2c $F chromosome 10 99%
AAAA01010273.1 ortholog of AC113337.1
AAAA01010283.1  i  orth AC074054.1a $F chr 10  97%  2 aa diffs
AAAA01010398.1  not an exact match 71 like pseudogene fragment
AAAA01010435.1 orth of AC108875.1b $F 99% chr 5 similar to 51A2
AAAA01010464.1 orth of AL606640.1 $F chr 4, 1 diff
AAAA01010763.1  i  orth AL607097.1 $F chr X 99%  39% to 93D
AAAA01010866.1  i  orth? AP004264.1 $F chromosome 7 96%
AAAA01010885.1 ortholog of AT003629.1
AAAA01010988.1  i  orth AC119149.2 $F chr 10 99%
AAAA01011090.1  i  orth AP004704.1 $F chr 8 99%
AAAA01011187.1    orth AC074282.1 $P chr 10 96%
AAAA01011192.1   not an exact match 58% to AP002484
AAAA01011369.1  i  orth AL606625.1 $F chr 4 99%
AAAA01011405.1  i  orth AC087544.2 $F chr 10 99%
AAAA01011410.1   ortholog of AC118346.1 gene 2
AAAA01011417.1   orth of AP002093 $F 100%
AAAA01011465.1  i  orth AL731641.1 $F chr 4 98% C-term of CYP77A join aaaa01021406.1
AAAA01011521.1a  not an exact match 82% to AP003571.1 (2000 region)
AAAA01011521.1b  not an exact match 82% to AP003571.1 (6000 region)
AAAA01011555.1  i  orth AC109595.1 $F chr 5 >99%
AAAA01011592.1a  85% to AL607001.1 chr 4, gene 3
AAAA01011592.1b  82% to AL607001.1 chr 4, gene 3
AAAA01011593.1  i  orth AP003522.1 $F chr 6 100%
AAAA01011645.1   not an exact match 66% to AP005254.1a
AAAA01011852.1   not an exact match 63% to AC092559.2
AAAA01011899.1  i  orth AP003711.1 $F chr 6 >99%
AAAA01011965.1 94C-LIKE ORTHOLOG OF AU056498
AAAA01011971.1  i  orth AL606614.1a $F chr 4 96%
AAAA01012078.1    91% AP004139.1 $F
AAAA01012191.1  i  orth AP004000.1a $F chr 2 98%
AAAA01012243.1 CYP51
AAAA01012291.1  i  orth AP003571.1d $F chr 6 99%
AAAA01012342.1  i  orth AP003232.1b $F chr 1 100%
AAAA01012419.1   not an exact match 68% to D24290
AAAA01012480.1   orth CYP72A20 $F AP002839 98% chr 1
AAAA01012486.1  75% to D48181
AAAA01012488.1 ortholog of AA751892 CYP78A
AAAA01012542.1  i  orth AP004183.1 $P chr 8 99%
AAAA01012551.1   not an exact match 88% to AAAA01012419.1
AAAA01012578.1  i  orth AP003571.1a $F chr 6 99%
AAAA01012657.1  i  orth AP003990.1g $P chr 2 99%
AAAA01012662.1  orth to AP003850.1 $F chr 7, gene 6 96%
AAAA01012807.1   orth AP003232.1a $F chr 1 98%
AAAA01012955.1 $FI orth AP005099.1 $F chr 7, 99%
AAAA01012971.1a i  orth AP003523.1d $F chr 6 99%
AAAA01012971.1b i  orth AP003523.1c $F chr 6 99%
AAAA01012992.1 not an exact match 80% to AAAA01002645.1b
AAAA01013115.1  57% to AP002093 $F
AAAA01013363.1 ortholog of AC084282a 100%
AAAA01013389.1   AP003870.1 $F chromosome 8 related to 92A
AAAA01013573.1a 99% to AU166330.1
AAAA01013573.1b Second N-term, ortholog of AQ575202.1 AG023995.1
AAAA01013599.1   orth of AP004162.1 $F chr 8
AAAA01013633.1  i  orth AP004264.1 $F chromosome 7 99%
AAAA01013736.1 ortholog of BI811079.1 AP005114.1b
AAAA01013880.1   AQ869247.1 53% to 99A1
AAAA01013893.1 pseudogene ortholog of AP005254.1b 
AAAA01013993.1   orth AP003278a $F chr 1 100%
AAAA01014014.1   not an exact match 48% to aaaa01018092.1
AAAA01014066.1  i  orth AP004326.2a $P chr 1 100%
AAAA01014110.1  i  orth AP002092a   $F       100%
AAAA01014217.1   not an exact match 64% to AP003378.1
AAAA01014240.1a i  orth AP003232.1d $F chr 1 100% (1000 region)
AAAA01014240.1b i  orth AP003232.1d $F chr 1 100% (4000 region) dup. of 1a
AAAA01014272.1   not an exact match 84% to AC068924.9a
AAAA01014333.1   not an exact match 74% to AAAA01014014.1
AAAA01014342.1  i  not an exact match 85% to aaaa01012419.1 $FI
AAAA01014445.1  i  orth AP003232.1h $F chr 1 100%
AAAA01014453.1 orth AC025783.5a $F chromosome 10 99%
AAAA01014464.1   not an exact match 78% to AAAA01007897.1
AAAA01014488.1  i  orth AC074105.1 $F chr 10 99%
AAAA01014577.1  i  orth AC083943.6 $F        100%  CYP78A11
AAAA01014709.1     49% to 51A2
AAAA01014797.1  i  orth AC074105.1 $F chr 10 99%
AAAA01014830.1   AL662990.1 chromosome 4 67% to CYP79 sorghum
AAAA01014899.1   not an exact match 68% to AP003735.2
AAAA01014982.1   not an exact match 84% to AP003378.1
AAAA01015179.1   58% to 90A1
AAAA01015196.1   orth to AP004181.1 $F chromosome 2 96%
AAAA01015239.1   not an exact match 55% to AC090873
AAAA01015254.1  i  not an exact match 53% to AC092559.2
AAAA01015479.1 $FI ortholog of AQ160861
AAAA01015559.1 $FI orth AP004026.1 $F chr 2 >99% 2 aa diffs
AAAA01015583.1a  ortholog of AC068924.9h (1000 region)
AAAA01015583.1b  ortholog of AC068924.9g 100% (3000 region)
AAAA01015583.1c  not an exact match 93% to AC068924.9h runs off end
AAAA01015628.1   orth to AP002092b $F 100%
AAAA01015659.1  i  orth AP003232.1f $F chr 1 100%
AAAA01015785.1   AC068924.9j
AAAA01015940.1  i  orth AP005302.1d chr 6 100%
AAAA01016095.1   orth AC074232.2c $F chr 10 99%
AAAA01016100.1  i  orth? AC105377.3 $P chr 10 94% like 98A3
AAAA01016223.1  i  orth AL606614.1b $F chr 4 96%
AAAA01016295.1   81% to AL607001.1 chr 4, gene 3
AAAA01016347.1   orth of AP003244 $F 59% to 90D1
AAAA01016355.1 ortholog of AA754418
AAAA01016663.1  i  orth AC091302.3 $F chr 3 99%
AAAA01016714.1   not an exact match 51% to AP003850.1
AAAA01017052.1   orth of AP003232.1 $F chr 1 99%
AAAA01017255.1   not an exact match 82% to AP003232.1
AAAA01017257.1   not an exact match 78% to AP004704.1
AAAA01017492.1 $FI orth AP003850.1 $F chr 7 96%
AAAA01017554.1   not an exact match 71% to aaaa01010047.1dca hybrid seq
AAAA01017559.1  i  orth AP004346.1b $F 98%
AAAA01017648.1     orth of CYP72A23 $F AP002839
AAAA01017763.1  i  orth AP003990.1c $F chr 2 97%
AAAA01017833.1 $PI N-term pseudogene fragment
AAAA01018092.1 ortholog of AU031131
AAAA01018418.1     orth CYP72A22 $F AP002839 100%
AAAA01018574.1  i  orth AC119149.2 $F chr 10 99%
AAAA01018882.1    91% to AP004139.1 $F
AAAA01018916.1 $PI orth? AP005254.1a $F chr 8 95% 4 diffs with BI808700.1
AAAA01018940.1  i  orth AP004022.1b $F chr 2 99% 92A like
AAAA01019060.1   not an exact match 51% to AP003909.1
AAAA01019517.1 ortholog of AQ869312.1
AAAA01019610.1  i  orth CYP98A4 AC108505.1 $F chr 5 100%
AAAA01019769.1    orth AC074232.2a $F chromosome 10 100%
AAAA01019878.1 orth AC104708.1b $F 72A like seq 2 diffs
AAAA01019887.1 ortholog of AC068924.9f 97% 14 diffs
AAAA01020350.1  i  orth AP004591.1  $F chr 8 99%
AAAA01020516.1  i  orth AP003571.1c $F chr 6 95%
AAAA01020842.1  i  orth AP004591.1  $F chr 8 100%
AAAA01020908.1   71% to aaaa01022933.1 $FI
AAAA01021177.1 ortholog of AC120537.1 C-term
AAAA01021346.1  i  orth AP003571.1c $F chr 6 98% 1 diff
AAAA01021379.1  i  orth AC093612.15 $P chr 10 97%
AAAA01021406.1 ortholog of AU070007 N-term of CYP77A join AAAA01011465.1
AAAA01021677.1  i  orth AC084319 $F 99%
AAAA01021750.1    orth to AC107226.1 $F chromosome 3 100%
AAAA01021848.1  57% to 90A1 see AAAA01015179.1
AAAA01022256.1 $FI orth AP003723.1 $F chr 6 100% join with AAAA01003438.1
AAAA01022265.1  i  orth AC097276.6 chr 3 99% C-terminal missing 5 aa
AAAA01022495.1    52% to AC118132.1 $F
AAAA01022933.1 96A like ortholog of D46472
AAAA01022934.1  i  orth AC105364.1  $F chr 3 100%
AAAA01022983.1  i  orth AC068924.9b $F  99%
AAAA01023161.1 ortholog of AC097276.6 N-term
AAAA01023188.1  45% to 72B
AAAA01023253.1  orth of AP004090.1 $F chromosome 2
AAAA01023514.1  orth AC087220.7 $F chr 3, 99%
AAAA01023722.1   not an exact match 61% to AC120537.1c
AAAA01024052.1   70% to D48181
AAAA01024345.1   not an exact match 76% to CYP98A4 AC108505.1
AAAA01024460.1   91% to AAAA01023188.1
AAAA01024682.1 orth of AP004090.1 $F chromosome 2 N-term join with AAAA01023253.1
AAAA01024897.1  i  orth AC068924.9b  $F 98% duplicate of aaaa01022983.1
AAAA01025086.1  orth of AP003752.1d  $P chr 7 100%
AAAA01025138.1   55% to 94B3
AAAA01025223.1  i  orth? AP003571.1g $F chr 6  95%
AAAA01025351.1  i  orth? AC116603.1  $F        94% 2 diffs
AAAA01025401.1  i  orth AP004000.1c  $F chr 2  98%
AAAA01025743.1  i  orth AP004346.1b  $F        99%
AAAA01025826.1  i  orth AC096855.1   $F chr 3  98%
AAAA01027238.1 similar to AP003927.1
AAAA01027323.1  i  orth AL606630.1 $F chromosome 4 100%
AAAA01027888.1  i  orth AP005285.1 gene 1 $F 100% similar to 81D
AAAA01027906.1  i  orth AP004000.1a $F chr 2 99%
AAAA01028153.1   orth of AC090482.3 $F join aaaa01006865.1 aaaa01094999.1 aaaa01003531.1 
AAAA01028263.1   not an exact match 72% to AP003866.1 $P
AAAA01028453.1   not an exact match 91% to AC105377.3 $P like 98A3
AAAA01028498.1   71% to aaaa01014333.1
AAAA01028537.1  i  orth AP003261.1 $P chr 1 98% 1 diff
AAAA01028620.1 65% to CYP711
AAAA01028711.1  i  orth AL606448.1 $P two short pseudogene fragments = D15209
AAAA01029060.1   not an exact match 82% to D24290
AAAA01029515.1    orth CYP72A19 $F AP002839 chr 1 100%
AAAA01029883.1    orth AC074232.2b $F chr 10
AAAA01031277.1  i  orth AP003523.1b $F chromosome 6 99%
AAAA01032107.1  i  orth AP003232.1d $F chr 1 100%
AAAA01032282.1  i  orth AP003571.1c $F chromosome 6 100%
AAAA01032609.1     not an exact match 70% to AAAA01019060.1
AAAA01032612.1  i  orth AP003571.1c $F chr 6 100%
AAAA01032717.1  i  orth AC105377.3  $P chr 10 99% like 98A3
AAAA01032734.1  i  orth AC078944.5b >99% join with aaaa01001606.1a
AAAA01034116.1     not an exact match 32% to AC073556.1
AAAA01034252.1  i  not an exact match 77% to AP003523.1b
AAAA01034650.1  91% to aaaa01000965.1d $PI
AAAA01034672.1  56% to 90A1
AAAA01034814.1   76% to AP004181 $F chromosome 2
AAAA01035499.1   not an exact match 53% to AP005114.1b
AAAA01035549.1   orth AP003278 $P chr 1
AAAA01036102.1   76% to aaaa01011417.1
AAAA01038529.1   not an exact match 67% to D24290
AAAA01039014.1  join to AAAA01011645.1 98%
AAAA01039155.1 34% to 71B25 N-term
AAAA01039974.1 $FI ortho AC120537.1 join with aaaa01021177.1
AAAA01040030.1   33% to 94D new family?
AAAA01040160.1  i  orth AP003571.1e $F chr 6 96%
AAAA01040384.1 $FI orth D46472 (4 diffs) join aaaa01022933.1
AAAA01040889.1  i  orth AL606614.1b $F chr 4 100%
AAAA01041444.1  i  orth AP003523.1a $F chr 6 100%
AAAA01041819.1   96% to AAAA01016714.1 $FI
AAAA01042113.1   new family ?
AAAA01042159.1  i  not an exact match 60% to AP003434.1b
AAAA01043764.1  i  orth AP004346.1a $F 97%
AAAA01044854.1  new family? 55% TO AAAA01050446.1 
AAAA01045745.1  98% to aaaa01006105.1a $FI 2 diffs 64% to AC096855.1 $F
AAAA01045877.1    84% to AP003232.1f
AAAA01047800.1a  = aaaa01006859.1b $FI 100% C-term
AAAA01047800.1b  = aaaa01006859.1b $FI 100% C-term 
AAAA01048292.1 ortholog to AP005285.1
AAAA01048884.1  i  orth AP003571.1e $F chr 6 97% 3 diffs
AAAA01049788.1  i  orth AC074054.1a $F chr 10 98%
AAAA01050076.1  i  orth AP005285.1 gene 1 $F 96% 2 diffs
AAAA01050446.1    new family? 55% TO AAAA01044854.1
AAAA01050703.1 orth AU173808.1 100%
AAAA01051575.1   not an exact match 69% to AP004326.2b
AAAA01053816.1 80% to aaaa01014014.1 $FI
AAAA01053818.1  i  orth AP003571.1b $F chr 6 100%
AAAA01054542.1  i  96% to AAAA01006398.1d 76% to AP003434.1c $F
AAAA01057581.1 orth AP003752.1d $P chromosome 7 1 diff
AAAA01058627.1  70% to AL606640.1 $F
AAAA01059584.1   not an exact match 62% to AP004000.1
AAAA01060623.1   not an exact match 71% to AAAA01034116.1
AAAA01061925.1  new family?
AAAA01062436.1   55% to 90D1
AAAA01062516.1    not an exact match 40% to AAAA01015583.1a new family
AAAA01063083.1    orth AP003522.1 $F chr 6 96%
AAAA01064375.1    63% to D46472
AAAA01065204.1 ortholog of AY022669.1 
AAAA01065390.1 new family? 53% TO AAAA01050446.1
AAAA01065746.1 84% to D48181
AAAA01066056.1 = aaaa01012243.1 $FI Indica rice genome CYP51
AAAA01066426.1   not an exact match 39% to AP003434.1
AAAA01066972.1 $FI  orth D46472     100% also aaaa01022933.1 
AAAA01067145.1 orth of AC108875.1b $F chromosome 5 1 diff
AAAA01067419.1 27% to aaaa01002989.1 $FI mid up to I-helix region
AAAA01067490.1 orth AP003232.1b $F chr 1 100%
AAAA01067877.1   new family?
AAAA01069231.1  i  orth AC068924.9b $F 96%
AAAA01069756.1  i  orth AP005254.1c $F chr 8 100%
AAAA01070145.1     orth CYP72A21 $F AP002839 chr 1, 100%
AAAA01070587.1  i  orth AP003990.1e $F chr 2 96%
AAAA01071198.1  i  98% to aaaa01024345 75% to CYP98A4 AC108505.1 $F
AAAA01075650.1  i  orth BI813130.1 (4 diffs) join with aaaa01008405.1
AAAA01076398.1  i  orth AP003571.1b $F chromosome 6 99%
AAAA01076605.1 ortholog of AU172561.1 (1 diff)
AAAA01077059.1    new family?
AAAA01078205.1    new family? 50% TO AAAA01092846.1
AAAA01079567.1  i  orth AP003909.1a $F chromosome 8 99%
AAAA01081177.1     not an exact match 53% to AAAA01034116.1 39% to 86C3
AAAA01082499.1  i  51% to aaaa01007897.1 $FI
AAAA01083019.1  i  orth AP003571.1c $F chr 6 99%
AAAA01083800.1 ortholog of AQ575117.1 100%
AAAA01085198.1 58% to CYP711
AAAA01085971.1   not an exact match 45% to AC021892.5
AAAA01088222.1   not an exact match 64% to AP005114.1b $F
AAAA01089015.1  i  orth? AP005285.1 gene 2 97% 2 diffs/59 aa
AAAA01090268.1   66% to 90A1
AAAA01090721.1   55% to AL606640.1
AAAA01092069.1   not an exact match 61% to AC087544.2
AAAA01092197.1  i  orth AP003723.1 $F chr 6 100%
AAAA01092846.1     new family? 50% TO AAAA01078205.1
AAAA01093009.1  i  orth AP005254.1b $P chr 8 100%
AAAA01093055.1    not an exact match 32% to AAAA01007897.1
AAAA01094999.1    93% to AC090482.3 $F join aaaa01006865.1 aaaa01028153.1 aaaa01003531.1 
AAAA01098934.1  i  orth AP003571.1b $F chr 6 99%
AAAA01098941.1    61% to AP004139.1, 59% to 86As
AAAA01099164.1  i  orth AC068924.9h $P 97%
AAAA01101226.1 ortholog of AC068924.9e 95% 7 diffs (short piece = 478 bp)
AAAA01101459.1  i  orth AP003571.1f $P chr 6 97%


CYP51 clan contains only one family CYP51 (8 sequences)

>AB025047 CYP51 rice (partial)   80% to 51A2 missing N-term 64 aa
BE040549.1 OE08G10 OE Oryza sativa cDNA 5' Length = 255 I-helix CYP51
BE230288.1 99AS641 Rice Seedling cDNA clone 99AS641.Length = 586
BE230302.1 99AS655 Rice Seedling cDNA clone 99AS655.Length = 627
BE607441.1 OE202C10 OE cDNA clone ID707 C-term CYP51 Length = 428
REEYARLGSVFTVPILSRKITFLIGPEVSAHFFKGNEAEMSQQE
VYKFNVPTFGPGVVFDVDYSVRQEQFRFFTEALRANKLRSYVDQMVVEAEEYFSKWGE
SGTVDLKYELEHLIILTASRCLLGREVREKLFDDVSSLFHDLDNGMQPVSVIFPYLPI
PAHRRRDRARQRLKEIFATIIKSRKASGRAEEDMLQCFIDSKYKSGRSTTEGEITGLL
IAALFAGQHTSSITSTWTGAYMLRFKQYFAAAEEEQKEVMKRHGDKIDHDILAEMDVL
YRCIKEALRLHPPLIMLLRQSHNDFSVTTKDGKEFDIPKGHIVATSPAFANRLPHIFK
NPDSYDPDPYAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEF
ELVSPFPETNWKAMVVGIKDEVMVNFKRRKLVVDN

>aaaa01012243.1 $FI Indica rice genome CYP51 New April 24, 2002
5108 MTLADPNHRLIAGAALLVATLAFIKLLLSSAGGGKKRLPPTIPAAPLVGGLLRFMRGPIPM 4926
4925 IREEYARLGSVFTVPILSRKITFLIGPEVSAHFFKGNEAEMSQQEVYKFNVPTFGPGVVF 4746
4745 DVDYSVRQEQFRFFTEALRANKLRSYVDQMVVEAE 4641
2774 EYFSKWGESGTVDLKYELEHLIILTASRCLLGREVREKLFDDVSALFHDLDNGMQPVSV 2598
2597 IFPYLPIPAHRRRDRARQRLKEIFATIIKSRKASGQAEEDMLQCFIDSKYKSGRSTTEGE 2418
2417 ITGLLIAALFAGQHTSSITSTWTGAYMLRFKQYFAAAEEEQKEVMKRHGDKIDHDILAEMDVLYR 2223
2222 CIKEALRLHPPLIMLLRQSHNDFSVTTKDGKEFDIPKGHIVATSPAFANRLPHIFKNPDS 2043
2042 YDPDRYAPGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWTHLLRNFEFELVSPF 1863
1862 PETNWKAMVVGIKDEVMVNFKRRKLVVDN* 1773

>AP005448.1a (japonica cultivar-group) chromosome 7 21 June 2002
29768 TISDTMWLTTVALLLTTVVIWTALQKRKRGEACPAAVAPPPIVQGTALVRFLRAMARDG 29944
29945 PLEVIREQLAKLGSVFMASAPLGLFKVTFLVGAEL 30049

>AP005448.1b $F (japonica cultivar-group) chromosome 7 21 June 2002
32724 MDHVTSSTIARGAMSWVAATVALLLTTAVILTALQKRKISSPAAAAPPVVRGAGLVRFA 32900
32901 RAMARDGPLEAIREQQAKLGSVFTAIAPFGLFKVTFLIGPEVSSHFYLAPESEMGQGSIY 33080
33081 RFTVPLFGPEVGYAVDPDTRAEQMRLFWDVLKPRSIEARVGAMAEEVQ 33224
35381 NYFSRWGEQGTVDLKKELEQVLMLIASRCLLGREVRESMVDEVYELFRDLDNGLHLIS 35554
35555 TMLPYLPTPAHRRRDRARQRLGEIFTEVIRSRRNSGTADNGDDVLQRLIDGRYKD 35719
35720 ERDLTDVEVVGLLVALVFAGKHSSSSVSTWTGINLLSHPNHLVAVIAEQDRLMASRARTD 35899
35900 DDHDRVNYDTVQEMTTLHRCIKEALRLHPPAVAMFRQARKHFTVQTKEGKEYTIPGGHTV 36079
36080 MSTILVNHHMPNVYKDPHVFDPSRFARGRGEDKAAGPFSFLAFGAGRHSCAGESFAYTQI 36259
36260 KVIWSHLLRNFELKMVSPFPETSWRMVTPEPKGTVMISYRRRNLTCK* 36403

>AC108875.1a $F chromosome 5 51% to 51A2 same as AQ050946 AQ687182 AQ258479
58% to AP004090 this might require subfamilies in CYP51
70310 MELTSSSAMWLAMAILAITAALTKIALGGGRRRCLSESSDLTCKTPPPPPVVNCIALLGL 70489
70490 LPALFRGDVPATMQQLYAKFGSVFTVSVAGLLKATFLVGPEVSAHFFQGLESEVSHGDLF 70669
70670 EFTVPMFGKEVGHGVDNATRIEQGRFFAEALKPVRLRIHVDPMVQEVE 70813 (0?)
71263 DYFAKWGQHGTVDLKHELEQLLLLISGRCLLGKEVMGTKFDEVCNLFRDIEGGVNLMSV 71439
71440 FFPYTPLIPSNRRRDMARERLHAIFSDIVRSRKQQQGDQEEVNDKDVLQSFIDSR 71604 (2?)
71910 YKADGRATTEAEVAGLITGVLFAAKHTSTHTSVWTGARLLTHEKFLAAAVDEQDQIVR 72083
72084 KHGIINGRIVTDHYGFLMEMHMLHICIKETLRLHPPAPMIVRTALRQFTVRTREGHEYCV 72263
72264 PAGHTMASPIVISNRVPYIYKDAHLYDPDRFGPRREEDKVGGKFSYTSFGGGRNSCVGEN 72443
72444 YAYMQIKAIWSHLLRNFELKLLSPFPKTDWSKLVPEPQGKVMVSYKRRQL 72593

>AC108875.1b $F chromosome 5 48% to 51A2
80009 MAIILAITAAVTKIARGGRRRSATDPTCKMPPPPPVVNSIALLRLLPTLFRSGLPA 80176
80177 ILHELYTKFGSVFTINLAGLLKMTFLVGPEVSAHFFQGLESEISHGNLLEFTVPMFGKEI 80356
80357 AHGVDSATRNEQARFFVDALKPARLRIHVDPMVQEVE 80467 (0?)
84741 DYFAKWGQHGTVDLRRELEQLLLLISGRCLLGKEVMGTMFDEVCNLFRDIEGGVNLMSV 84917
84918 FFPYTPLIPSNRRRDMARKRLHAIFSDIVRSRKQREGDNVDKDVLQSLIDSRYKADGRAT 85097
85098 TEA*VAALMICLLFAAKHTSAYTSVWTGARLLSHERFLTAAVDEQDKIAREHSNINGGGR 85277
85278 ITDDRYGSLMEMRTLHSCIKETLRLHPPVPMLVRTAHKQFTVRTREGHEYAVPAGHTIAS 85457
85458 PIVISNQVPYIYKDGHLYDPDRFGPAGREEDKVGGKFSYASFGGGRTGCVGEGYAYMQIK 85637
85638 AIWSHLLRNFELRLLSPLPKSDFTKFVPEPHGELMVSYKRRQL 85766

>AC108875.1c $F chromosome 5 50% to 51A2
122577 MDLVSISIYMWAMAALCTIITAMVTTKLARVRRPITLNPKSKRPLPPVVNVIA 122735
122736 LLEHLPRLCTKGVIPVYKGSVFTVSLFGLKATFLVGPEVSAHFYQGMDSEISQGDLYEFT 122915
122916 VPLFGKGVGFDIDNATRTEHLRFFIDAIKTSKLRNHVNSMVQEVE 123050 (0?)
123296 DYFAKWGENGIVDIKHEFEKLLMLISGHCLLGKEVRDNMFDEVFSLF 123436
123437 HELDSGVGLGSVIFPYIPIPSHIRCDKAHAKLAKIFSKIVRSRRDSNRPAEQDVLQYLID 123616
123617 SKHRDGNSTTEQEVTGWIISMVFAGKHTSTNSTTWTGACLLTHDKFLTEALDEQKHMIQK 123796
123797 HGDHIDYNVLLDMDILHCCIKEALRMHPVAPIIYRKAQKSFVVRTREGDAYDIPEGHNLL 123976
123977 SPMIFNNRLPYIYKDPHMYDPDRFAPKREEDKVGGMFSYTSFGGGRHICIGEAYAYMQIK 124156
124157 VIWSHLLRNFELKLESPFPKTNWSKILLEPWGKVMVSYKRRRL 124285

>AP004090.1 $F chromosome 2 clone OJ1399_H05 49% to 51A2
AQ843111.1 nbxb0005D03r CUGI Rice BAC genomic cloneLength = 507 49% to 51A2
78158 MAVLFVATKMIQQRPRTLCLYEKENKEEELLLPPVMSVVSVLTAYLPTLIAKGLPAVIHDLH
77972 SRLVTLLVTAHFFQASESEIRQSNIYKVTVPVFGRGVLYDVDLATRSRQISFCTDS 77805
77804 IKPINLRGHVDSMVHEVE 77751 (0)
76666 GYFAQWGEDGVVDIKYEMGNLILLIANRCLLGKQFGESKLEQVSTLLHELFDNGFHLISLF 76484
76483 FPYLPTPQHRRRDKARAMLGEMIHEAVRSRRNSGVAEDDVLQKFLDSKYINGRCMTENEI 76304
76303 AGLLICMMFAAQHTSSSTSTWTGACLLSHGHRSYLAAAIQEQKRIIQQHGDRINWGILLQ 76124
76123 MTTLTHCIKEALRLHPPANLLIRHASKSFSVQTRQGHRYQIPKGHTLATCTTVGNRLPYI 75944
75943 YKDPNVYDPSRFGPGREEDKVGGKFSYTPFSAGRHVCLGEDFAYMQIKVIWSHLLRNFDL 75764
75763 ELISPFPEEEWEKFIPGPKGKVMVTYKRRRLL* 75665

>AP003866.1a $F chromosome 7 clone OJ1092_A07 53% to 51A2
AQ326645 and AQ291927 mid to K-helix region 52% identical to wheat CYP51
60% identical to AQ327456 68% to EST T88278 705 family
AQ689048.1 nbxb0078H10r CUGI Rice BAC genomic clone Length = 737
AQ396185.2 nbxb0066K16r CUGI Rice BAC genomic cloneLength = 327
50920 MDMAAAAAVWFSAIAAVLLAASTIAVVVVAKMTGKRNGGAAAAAAAAAEAELPL
51082 PPVVSGVSLIIPVITRGPMAVADELYVKLGSVFT (0)
      GGFYSRPE 51261
51262 SEVHQGGTYRMTVPMFGRGVMYDVDVATRSEQIAVCFEALRPTKLRSSTVTMVRETE 51432 (0)
52114 EYFAKWGEQGTVDLKRELDLLILTIASRVLLGKEVRETMFADVVASFHELMDNSMHLI 52299
52300 SLCFPNLPIPRHRRRDTASARLKELFSRAIQLRRGSGRAEDDVLQRFLESRYRDGRAMSD 52479
52480 NEITGMLIALVVAGQHMSSSASTWTGAFLLRDPKHLAAAVDEQRRLIGDDRVDYDALT 52653
52654 TGMSTLHRCIKEALRMHPPAPALVRTVRRGFAVWTREGKEYRMPAGHSVVSYAAFNHRLG 52833
52834 YVYRDPDEYDPERFGPERKEDRVAGKFSFTAFGGGRHACLGEHYAFLKMKVIWSYLLRNF 53013
53014 ELELVSPFPEVELNNIMLGPRGEVMVRYKRRKLTST* 53124

>AP003866.1b $P chromosome 7 clone OJ1092_A07 
No obvious N-terminal, two in frame stops, three frameshifts = Pseudogene
82%  to AY022669.1 seems to be a CYP51 pseudogene
54048 VRFLHRKVTFLVGPEESSHFFTGLDSEISQDEVSRFIIPTFGS*VAFD 54191 (intron no boundaries)
54642 AGYATQ*EQFRFFGDTMKPTKLRSYVSHMVYEVE 54743 (0) missing 20 aa
56119 VVTLIATRCLFGEVRSKMLGEVPTLLRELNDSMRLITIVFPYLPIPAHRRRDSARARL 56292
56293 GEIFVEIVRSRRSSPGGGGAGHDDMLQCLIDARYKDGRATTEG 56421 frameshift
56424 AEVAGMLVSALFAGQYTSSSTSTWTGAR 56507 frameshift
56510 LLTHPEHLRAAVREQEELVLVRHRHGGDVVDHDALQRMGHLHRCVKETLRLHPPSLMLLRHAR 56698
56699 RSFVVRARGSGDAEYEVPAGHTVASPMVIHNALPHVYEDAGSFDPGRFGPAREEYRAYAA 56878
56879 DHAYTVFGGGRHACVGE 56929 frameshift
56932 VIKVIWSHLLRNFELELMLPFPETDWNDVMPGPKGKVMVLPPSHNKIISVIVGFSVQL* 57108

>AY022669.1 (partial)   microsatellite MRG4994 containing (CCG)X8, Length = 224
82% to CYP51 pseudogene above
222 PRLPIPAHRRRDRARARLGEIFSDIVRSRRGSSGGGGGGGGARHDDMLQCLIDARYKDGRATTETEVAGMLVAA 1

>aaaa01065204.1 (indica cultivar-group) scaffold065204 exon 3
ortholog of AY022669.1 searched Genbank for extensions
(0) GYFARWGQSGTVNMKQEFEQLVTLIASRCLLGEEVRDKMFDEV
STLLRELNDGMRLVTILFPRLPIPAHRRRDRARARLGEIFSDIVRSRRGSSVGGGGGAPH
DDMLQCLIDARYKDGRATTETEVAGMLVAALFAGQHT

There are additional CYP51 related genes in rice that have not been identified in Arabidopsis.  These may require CYP51 subfamilies

CYP71 clan contains 25 families 71, 73, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 
89, 92, 93, 97, 98, 99, 701, 703, 705, 706, 712 (712 = a 705 subfamily), 719? 723?
161 sequences

>AC087599.11 $P chromosome 10 clone OSJNBa0057L21, pseudogene fragment like 71A1 44% to AAAA01006105.1b
16812 GGGGRWTETLEWIMAELTANTRVMAKLQDEISRAADGK 16925 24 aa deletion and frameshift
16931 PAPILVPRQSTATAVVQG*EILAKTSLFINVWAMGRYPAAWNSSEEFWPEQFLASREAVD 17110
17111 FQGNNYQLILFITDRRIFPDINFAVPVLETALVGLLHPTNELLGGG 17248
17249 GGLMWLQRSCSRARRPRSTAHRRHRSGTHPAAIAAAAAT* 17368

>BI808626.1 (partial) clone D005B07.Length = 538 EST with numerous frameshifts similar to AAAA01035499.1 and 71Bs no ortholog found
no extensions in htgs nr gss or est sections of Genbank 8/3/02
66% to AY104083.1 Zea mays
11 LFVHAWAIGRDPXAWXXPEEFRPDRFLXXSVDFRGNDYQLVPFGAAPRICPGISFXX
PVLEMALFALLHHFDWELPAGMXXXXXDMSEAPGLTTPLRVPLRLVPKRKARLPRHIYKRNVIGE*

>AP004684.1a $F chromosome 6 clone P0012H03, Length = 163117 41% to 76C2
New seq 76% to CONTIG OF C72003 (c-term) 59% to AP003623.1 70% to AU173996.1
10968 MQQQVTEFANAGSDTHAERKQSELTAAEMGHELWVLW
11079 ATLAVSLLCYLYLTSHRLGSRRRRWPPGPRPLPLLGNLLDLRGG 11210
11211 NLHHTLARLARAHGAPVMRLQLGLSPAVVISSPGAAREAFTAHDRRLAARAVPDAN 11378
11379 HALGFCDRSMIWLPSADPMWRTLRGVVAAHAFSPRALAAARAVHERKVRDLVA 11537
11538 YLRGRAGREVDVKDAVYGGVLNLVSSALFSADVVDVGGESAQGFRELVEELIESIAKPN 11714
11715 VSDLFPFLRRFDLQGWRRWTSGHLAKIYKVLDDIIDRRSAEDDAAMDKRGDFLDVL 11882
11883 LELMSTGKIAREYLTNILFDVFTAGSDTMSLTVVWAMAELLRNPGVMAKAR 12035
12036 AEIDAALGGREAVEEADVARMPYVQAVLKEAMRLHPVAPVMLPRKAAEDGVEIGG 12200
12201 FEVPRGCAVIFNTWAIMRDPAAWERPDEFVPERFVGRSRATEEMDFRGKDFGFLPFGSG 12377
12378 RRLCPGVPMAERVLPLIMASLLHAF 12452
12453 EWRLPDGMSAEQLDVSEKFTTANVLAVPLKAVPVVIAC* 12569

>aaaa01000831.1 $FI (indica cultivar-group) ortholog of AP004684.1a (1 diff)
check for N-term 28aa extension 
12835 MGHELWVLWATLAVSLLCYLYLTSHRLGSRRRRWPPGPRPLPLLGNLLDLRGGNLHHTLARLARA 13029
13030 HGAPVMRLQLGLSPAVVISSPGAAREAFTAHDRRLAARAVPDANHALGFCDRSMIWLPSA 13209
13210 DPMWRTLRGVVAAHAFSPRALAAARAVHERKVRDLVAYLRGRAGREVDVKDAVYGGVLNL 13389
13390 VSSALFSADVVDVGGESAQGFRELVEELIESIAKPNVSDLFPFLRPFDLQGWRRWTSGHL 13569
13570 AKIYKVLDDIIDRRSAEDDAAMDKRGDFLDVLLELMSTGKIAREYLTNILFDVFTAGSDT 13749
13750 MSLTVVWAMAELLRNPGVMAKARAEIDAALGGREAVEEADVARMPYVQAVLKEAMRLHPV 13929
13930 APVMLPRKAAEDGVEIGGFEVPRGCAVIFNTWAIMRDPAAWERPDEFVPERFVGRSRATE 14109
14110 EMDFRGKDFGFLPFGSGRRLCPGVPMAERVLPLIMASLLHAFEWRLPDGMSAEQLDVSEK 14289
14290 FTTANVLAVPLKAVPVVIAC* 14352

>AP004684.1b $F chromosome 6 clone P0012H03, Length = 163117
New seq similar to AP004000 57% to AP003523.1 78% to AP004688.1  
36% to 41% with 71A and 71B sequences possibly new subfamily in 71
117908 MDAAVFCCLLALLPLLHYLITLFLHGSRDSDLRLPPGPWRLPLIGSLHHLF 118060
118061 FGALPHRALRDLARRHGPLMLLAFGDAPVVVVASTAGAAREILRTHDDNFSSRPLSAV 118234
118235 VKVCTRRGAGITFAPYGEHWRQVRKICRLELLSPRRILAFRAIREEEAARLVRAIGVASP 118414
118415 PLVTNLSELLGNYVTDTTVHIVMGERFRERD ALLRYVDEAVRLAGSLTMADLFPSSRLAR 118594
118595 AMSSTTLRRAEAFVESLMEFMDRVIREHLEKKRSCQGGEREEDLIDVLLRLQAEGSLHFE 118774
118775 LTMGIIRAVIF 118807 (0)
118932 DLFSGGSETATTTLQWAMAELMRNPGVMSRAQAEVREAYKDKMEVTEEGLTNLTYLQCII 119111
119112 KETLRLHTPGPLALPRECQEQCQILGYDIPKGATVLVNVWAICTDNEFWDESEKFMPERF 119291
119292 EGSTIEHKGNNFEFIPFGAGRRICPGMQFGIANIELALANLLFHFDWTLPEGTLHSDLDM 119471
119472 TETMGITARRKEDLYVHAIPFVQLP* 119549

>AP003523.1a $F chromosome 6 clone P0416A11 six different genes 
AQ271656 nbxb0026B09r 53% to 71A16 N-term
35% to 40% with 71A and 71B sequences possibly new subfamily in 71
112855 MEQYLFLATLLILSLAFVKLRPRNNGENPPPGPWQLPVIGSLHHLAGALPHRALRDLA 113028
113029 TRHGELMLLRLGELPVVVASSPAAAREVMRTHDAAFATRPQTATLRALTRDGLGVAFAPQ 113208
113209 GEHWRCLRKLCVTELLGARRVRCLRRAREAEAAALVASLSTTTPEPVNVS 113358
113359 SLVARYVTDAVVRAVVGDRISDRDAFLERLEEGVKVAAGFTLADVFPSSRLARALSGTAR 113538
113539 RAEAHSREMTRLMDGVIEEHRQRRAATGWRDEEDEDLLDVLLRIQKDGGLQIPLDMGTIRAIII 113730 (0)
113831 DLFSAGSETTGTTLQWAMAELMRNPAALRKAQAEVRGVLAGHSHVTEDALPDLHYLHL 114004
114005 VIKETLRLHVAVPLLLPRECQEPRLRVLGYDVPERAMVLVNAWAICRDTAVWGPDAEEFR 114184
114185 PERFDGGAVDFKGTDFEFVPFGAGRRMCPGVAFAVAIMELGLASLLFHFDWELAGGTAA 114361
114362 GELDMAEGLGITARRKSDLWLHATVSVPVPNTETS* 114469

>AP003523.1b $F chromosome 6 clone P0416A11 six different genes
54-58% with genes in AP003090 and AP004000 group
38% to 41% with 71A and 71B sequences possibly new subfamily in 71
118132 MDLMKSNPLQGSPWSL
118084 LNLLVLIIVAAMICGELCRRRRRRRGDENGGATRLPPGPWRLPFVGSLHHLAVMRPRGVV 117905
117904 VHRALAELARRHDAPVMYLRLGELPVVVASSPEAAREVLKTHDAAFATRAMSVTVRESIG 117725
117724 DKVGILFSPYGKKWRQLRGICTLELLSVKRVRSFRPIREEQVARLVDAIAAAAASS 117557
117556 TAEAAAVNISRQITGPMTDLALRAIMGECFRWREEFLETLAEALKKTTGLGVADMFPSSR 117377
117376 LLRAVGSTVRDVKLLNAKLFELVECAIEQHREQIRAAHDNGGDDDDAHGHGDKECFLNTL 117197
117196 MRIQKEGDDLDD 117161 (frameshift) LTMATVKAVIL (0)
       DMFAGGSESTSTTLEWALSELVRNPHVMQKAQAEIRHALQGRTRV 115967
115966 TEDDLINLKYPKNIIKETLRLHPVAPLLVPKECQESCKILGYDVPKGTIMFVNAWAIGRD 115787
115786 PRYWNDAEVFMPERFEKVAVDFRGTNFEFKPFGAGRRMCPGITFANATIEMALTALLYH 115610
115609 FDWHLPPGVTPDGLDMEEEFGMSVSRKRDLYLRPTLHMGLETI* 115478

>AL606658.1 $P chromosome 4 clone OSJNBb0016D16 lone pseudogene fragment
72% to AP003523 118132-115478
120987 SALNVSWQITGTLTDLTLHAIMGECGFRWHEEFLETLGEAQKKATRFGVADLFPSSRLLPAVGSRSGD 120784

>AP003523.1c $F chromosome 6 clone P0416A11 six different genes
73% to AP003523.1d 64% to AP003523.1f
128476 MAAELVHLLRYLFSVPM
128425 LFFIVPLLFLVCSPRRRRGRGSCRLPPSPWALPVVGHLHHLAGALQHRAMRDIARRHGPL 128246
128245 VLLRLGRLPVVVASSADAAREVMRTSDVAFAARPVNRMIRVVFPEGSEGVIFAPYGETWR 128066
128065 QLRKICTAELLSARRVHSFRSVREEEAGRMLRAVASAAAQTTVNLSELMSA 127913
127912 YAADSSARAMIGRRLKDRDTFLAMVERGIKLFGEQSLPNLYPSSRLAVLLSTMPRRMKRH 127733
127732 RERMTAYLDAIIEEHQESRASREDDEDLLDVLLRM 127628 frameshift
       QREGDLEVSRESIRSTIG bad exon boundary should be phase 0
126439 DMFIGGSEPPAITLQWIMAELIRNPEVMQKVQDEVRQLLVGQHRVTEESLSKLGY 126275
126274 MNLVIKETLRLHPPGPRLLLRVCRTTCQVLGFDVPKGTMVLVNMWAINRDPKYWSQAEEF 126095
126094 IPERFENAGINFKGTNFEYMPFGAGRRMCPGMAFGLATLELALASLLYHFDWKLPDGV 125921
125920 EIDMKEQSGVTTRRVHDLMLVPIIRVPLPV* 125828

>AP003523.1d $F chromosome 6 clone P0416A11 six different genes 
73% to AP003523.1c 
138301 MAEVVQLHHLILLLPLFILPFLLLRSSRRRRGACGRLPPSPWALPVIGHLHHLAGALPHRAMRDIA 138152
138151 RRHGPLVLLRLGELPVVVASSADAARDVMKTHDLAFATRPITRMMRLVFPEGSEGIIFSP 137972
137971 YGETWRQLRKICTVELLSARRVNSFRSVREEEVNRLLRAVAAAAASATSPAKTVNL 137804
137803 SELMSAYAADSSVRAMIGRRCKDRDKFLAMLERGIKLFVTPSLPDLYPSSRLAMVVSRMP 137624
137623 RRMRRHREEVFAFLDAIIAEHQENRASGEDEEDLLDVLLRIQREGCME 137480 frameshift
       SPLLSTESIRTTIG bad exon boundary should be phase 0
136562 DLFNGGSETTATTLQWIMAKLMRNPRVMQKAQDEVQRVFIGQHKVTEENLSNLSYMYL 136389
136388 VIKEALRLHPPRPPLLPRECRTTCQVLGFDVPKGTIVLVNMWAINRDPKYWDQSEEFILE 136209
136208 RFEHVDINFKGMNFEYMPFGAGRRMCPGMAFGLVNLELVLASLLYHFDWKL 136056
136039 GDLDMTQERGATTRRLHDLLLVPVIRVPLPLDSRS* 135942

>AP003523.1e $F chromosome 6 clone P0416A11 six different genes AQ331067 AQ364007.2
AQ331067 55% identical to AQ328148 47% identical to C74921 57% to 71B4 58% to 76C1 64% to AP003523.1f
AQ364007.2 nbxb0060E04f CUGI Rice BAC Length = 393 65% to 99A1
End of this gene matches AP003571 at 155149
151229 MAGFPVYLLFLAALIILPMANLIRSARHRRLAGARRPPPGPWALPVIGHLHHLLAGKLPH 151408
151409 HHKLRDLAARHGPLMLLRFGELPVVVASSADAAREIAKAHDLAFATRPVTRTARLTLPEG 151588
151589 GEGVIFAPYGDGWRQLRKICTLELLSARRVLSFRAVREQEVRCLLLAVASPSPEGTTAT 151765
151766 ASVVNLSRMISSCVADSSVRAIIGSGRFKDRETFLRLMERGIKLFSCPSLPDLFPSSR 151939
151940 LAMLVSRVPGRMRRQRKEMMEFMETIIEEHQAARQASMELEKEDLVDVLLRVQRDGSLQF 152119
152120 SLTTDNIKAAIA 152155 (0)
166133 DLFIGGSETAATTLQWAMSELLNNPKVMQKAQDEIRQVLYGQERITEETISSLHYLHL 166306
166307 VIKETLRLHPPTPLLLPRECREPCQILGFDVSKGAMVLINAWSIGRDPSNWHAPEKFMPE 166486
166487 RFEQNNIDFKETSFEYIPFGAGRRICPGMTFRLANIELLLASLLYHFDWELPYGMQAGD 166663
166664 LDMTETLAVTARRKADLLVVPVVRVPIVG* 166753

>AP003523.1f $F chromosome 6 clone P0416A11 six different genes
AU096456 AU096455 71% to AP002968 65% to 71B24 also = AU032983
168538 MAAAASSVLAYLLVVALLAIVPLVYFGWVARRRGEGGRLPPSPWGLPVIGHLHHLAGALPHHAMRDLA 168741
168742 RRHGPLMLLRLGELPVVVASSAEAAREVMRTRDIEFATRPMSRMTRLVFPAGTEGIIFAP 168921
168922 YGDEWRELRKVCTVELLSARRVQSFRAVREEEVGRLLRAVAATSSSPSPAQAAVNL 169089
169090 SALLSAYAADSAVHAIIGSRFKDRDKYLMLLERGLKLFARHTLPDLYPSSRLAMWLSRMP 169269
169270 RRMMQHRREAYAFTDAIIREHQENRAAGAGDGDGDDKEDLLDVLLRIQREGDLQFPLSTE 169449 
169450 RIKTTVG 169470 (0)
169893 DMFAGGSETAGTALQWIMAELIRNPRVMHKVQDEVRQTLAGRDRVTEDAISNLNYMHL 170066
170067 VIKEALRLHPPVPLLLPRECRNTCQVLGFDVPKGAMVLVNAWAISRDPQYWDEPEEFIPE 170246
170247 RFEDSNIDFKGTNFEYTPFGAGRRMCPGIAFGLANVELMLASLLYHFNWQLPDGMDTAD 170423
170424 LDMTEEMVVSARRLHDLLLVPVVHVPLPVASS* 170522

>AC118346.1 $F Gene 1, 94448-96200, 3 exons 97% identical to gene 2 (12 diffs)
36% to 41% with 71As and 71Bs
94448 MADQLVHLPQQLLVLLLFIAPFFFFFLIRSMRRRDGGSVRLPPSPWALPVIGHLHHLMGA 94627
94628 LPPHHAMRDIALRHGPLVRLRLGGLQVI 94711
94712 LASSVDAAREVMRTHDLAFATRPSTRVMQLVFPEGSQ (0)
      GIVFTPYGDSWRNLRKICTVELLSAKRVQSFRPIREEEVGRLL 95071
95072 RAVAAASPARRAVNLSELISAYSADSTMRALIGSRFKDRDRFLMLLERGVKLFATPSLPD 95251
95252 LYPSSRLAELISRRPRQMRRHRDEVYAFLDIIIKEHQENRSSSDDQEDLDLVDVLLRIQR 95431
95432 KGDFPLSTDNIKTTIG (0) 95479
95574 DLFNGGSETTATTLKWIMAELVRNPRVMQKAQDEVRRALGKHHKVTEEALKNLSYLHL 95747
95748 VIKEGLRLHPPGLPLLLRESRTTSQVLGFDVPQGTMILVNMWAISRDPMYWDQAEEFIPE 95927
95928 RFEHVNIDYYGTDVKYMPFGVGRRICPGIAFGLVNLELVLASLLYHFDWELPDGTELGNL 96107
96108 DMKEEMGAIARRLHDLSLVPVIRHPLPVDM* 96200

>AC118346.1 $F (japonica cultivar-group) chromosome 11 clone Ba0039F06, 
Gene 2 = AU096586.1, D48250 97% identical to gene 1 (12 diffs)
113634 MADQLVHLPQQLLVLLLFIAPFFFFFLIRSIRRRDGGSVRLPPSPWALPVIGHLHHLMGA 113813
113814 LPPQHAMRNIALRHGPLVRLRLGGLQVI 113897
113898 LASSVDAAREVMRTHDLAFATRPSTRVMQLVFPEGSQ (0) 114008
114127 GIVFTPYGDSWRNLRKICTVELLSAKRVQSFRPIREEEVGRLLRAVAAASPARRAVNL 114300
114301 SELISAYSADSTMRALIGSRFKDRDKFLMLLERGVKLFATPSLPDLYPSSRLAELISRRP 114480
114481 RQMRRHRDEVYEFLDIIIKEHQENRSSSDDQEDLDLVDVLLRIQRKGDFPLSTDNIKTTIG (0) 114663
       DLFNGGSETTATTLKWIMAELIRNPRVM 114840
114841 QKAQDEVRQVLGKHHKVTEEALRNLSYLHLVIKEGLRLHPPGLPLLLRESRTTSQVLGFH 115020
115021 VPQGTMILVNMWAISRDPMYWDQAEEFIPERFEHVNIDYYGTDVKYMPFGVGRRICPGIA 115200
115201 FGLVNLELVLASLLYHFNWELPDETELGNLDMKEEMGAIARRLHDLSLVPVIRHPLPVDM* 115383

>aaaa01011410.1 $FI (indica cultivar-group) Ortholog to AC118346.1 gene 2
4935 MADQLVHLPQQLLVL 
     LLFIAPFFFFFLIRSIRRRDGGSVRLPPSPWALPVIGHLHHLMGALPPQHAMRNIALRH 5156
5157 GPLVRLRLGGLQVILASSVDAAREVMRRHDLAFATRPSTRVMQLVFPEGSQ (0) 5309
5428 GIVFTPYGDSWRNLRKICTVELLSAKRVQSFRPIREEEVGRLLRAVAAASPARRAVNLSE 5607
5608 LISAYSADSTMRALIGSRFKDRDKFLMLLERGVKLFATPSLPDLYPSSRLAELISRRPR 5784
5785 QMRRHRDEVYEFLDIIIKEHQENRSSSDDQEDLDLVDVLLRIQRKGDFPLSTDNIKTTIG (0) 5964
6058 DLFNGGSETTATTLKWIMAELIRNPRVMQKAQDEVRQVLGKHHKVTEEALR 6210
6211 NLSYLHLVIKEGLRLHPPGLPLLLRESRTTSQVLGFHVPQGTMILVNMWAISRDPMYWD 6387
6388 QAEEFIPERFEHVNIDYYGTDVKYMPFGVGRRICPGIAFGLVNLELVLASLLYHFNWELP 6567
6568 DETELGNLDMKEEMGAIARRLHDLSLVPVIRHPLPVDM* 6684

>aaaa01008885.1 $FI (indica cultivar-group) almost same as AAAA01011410.1
ortholog to AC118346.1 gene 1
6884 MADQLVHLPQQLLVLLLFIAPFFFFFLIRSMRRRDGGSVRLPPSPWALPVIGHLHHLMGA 6705
6704 LPPHHAMRDIALRHGPLVRLRLGGLQVILASSVDAAREVMRTHDLAFATRPSTRVMQLVF 6525
6524 PEGSQ (0)
     GIVFTPYGDSWRNLR 6345
6344 KICTVELLSAKRVQSFRPIREEEVGRLLRAVAAASPARRAVNLSELISAYSADSTMRALI 6165
6164 GSRFKDRDRFLMLLERGVKLFATPSLPDLYPSSRLAELISRRPRQMRRHRDEVYAFLDII 5985
5984 IKEHQENRSSSDDQEDLDLVDVLLRIQRKGDFPLSTDNIKTTIG 5853
5758 DLFNGGSETTATTLKWIMAELVRNPRVMQKAQDEVRRALGKHHKVTEEALKNLSYLHL 5585
5584 VIKEGLRLHPPGLPLLLRESRTTSQVLGFDVPQGTMILVNMWAISRDPMYWDQAEEFIPE 5405
5404 RFEHVNIDYYGTDVKYMPFGVGRRICPGIAFGLVNLELVLASLLYHFDWELPDGTELGNL 5225
5224 DMKEEMGAIARRLHDLSLVPVIRHPLPVDM 5135

>AC118346.1 Gene 3 $P pseudogene 56% to AC118346.1 genes 1, 2
117756 DAAREVMRTHDLAFATRPSTRVMQLVFLEGSQ 117661
117553 GDRFTPYGDIWRNLRRSAPLAVSAKRVQFFRPIHQEEVCRLLQAVAVASPA 117395
117394 RGPPETLTSSFRPTWATLQCAP**GARLRDRDKSLMLLYRGVKPIRHARACQIFTQSIAL 117215
117214 ADLIIKSLSPMRRASYPMSNLLDIIFK 117134
117108 SDNHMDLTLVAFLLRFHKKGACPLSFCYIRKQFG*AF 116998

>AP003571.1 $F chromosome 6 clone P0458E02 continuation of contig AP003523.1
40% to 71B23
AQ687385 nbxb0074N19f 50% to 71B20
AQ258331 nbxb0020M04r 71-like sequence 36% to 71B33 89% to AP003571 4 diffs probably same
145371 MAAFLVYVLVLVPLAVVPFVYFNRVARRRGGDVRLPPSPWGLPVIGHLHHLVGALPH 145201
145200 VAMRDLARRHGPLMLLRLGELPVVVASSAEAAREVMKTRDLDFATRPMSRMARLVFPEG 145024
145023 GEGIIFAPYGDRWRELRKICTVELLSGRRVQSFRPVREEEAGRLLRAVAAASPG 144862
144861 QAVNLSELLSAHAADSSVRAIMGDRFRDRDAFLAMLERGLKLFAKPALPDLYPSSRLAM 144685
144684 LLSRMPRRMKQHHRDMVAFLDAIIQEHQENRSAAADDDNDLLDVLLRIQREGDLQFPLS 144508
144507 SESIKATIG 144481 (0)
144297 DMLVGGSETAATTLHWIMAELVRNPKVMQKAQDEVRRELIGHRKVTEDTLCRLNYMHM 144124
144123 VIKEALRLHPPGSLLLPRECRRTCQVLGYDIPKGATVFVNVSAIGRDPKYWDEAEEFIPE 143944
143943 RFEHSDVDFKGTHFEYTPFGAGRRMCPGMAFGLANVELTLASLLYHFNWELPSGIHAENL 143764
143763 DMTEEMRFTTRRLHDLVLIPVVHVPLPTI* 143674

>AP003571.1e $F chromosome 6 clone P0458E02 
128926 MADDYFYLGLALASLLVVLFARRRRSAAHGDGGLRLPPGPWQLPVIGSLHHLAGKLPHRAMRDLA 129120
129121 RRHGPVMMLRLGEVPTLVVSSRDAAREVMRAHDAAFASRPLSATVRVLTSGGRGIIFAP 129297
129298 YGGSWRQLRKIAVTELLTARRVASFRAIREEEVAAMLRAVAAAAAAGRAVELRAA 129462
129463 LSALVAETTVRAVIGDRCKDRDVFLRKLQRTIELSAGFNPADLWPSSRLAGRLGGA 129630
129631 VREAEECHDTVYGILDGIIQEHMERTSSGSCGAGDGDGDGEDLLDVLLRIQKEGGLEFPV 129810
129811 DMLAIKQVIF 129837 (0)
132964 DIFGAGSETSATTLEWVMAELIRNPKAMRKATAEVRRAFAADGVVLESALGKLHYMHLVI 133143
133144 RETFRLHTPLPLLLPRECREPCRVLGYDVPRGTQVLVNVWAIGRDERYWPGGSPEEFRPE 133323
133324 RFEDGEAAAAVDFRGADFELLPFGAGRRMCPGLAFGLANVELALASLLFHFDWEAPDVAD 133503
133504 PAEFDMTEGFGITARRKADLPLRPTLRVPVLVSVG* 133611

>AP003571.1f $P chromosome 6 clone P0458E02 pseudogene fragment
136961 VSEDALGELRYLQLVIRETLRLHPPLPLLLPRECTIGR 137074
137075 DERYWPGGSPEEFRPERFDDGEATAAVDFRGADFELLPFGGGRRMCPGMAFGLANVELPL 137254
137255 SSLLFHFDWEVPGMADPTKLDMTEAFGITSRRKENLHLRPLLRVSVPG 137398

>AP003571.1g $F chromosome 6 clone P0458E02
139036 MEDATHGYVYVGLALVSLFVVLLARRRRSPPPAAHGDGGLRLPPGPWTLPIIGSLHHLVGQIP 139224
139225 HRAMRDLARRHGPVMLLRIGEVPTLVVSSRDAAREVTKTHDTAFAMRPLSATLRVLTN 139398
139399 GGRDLVFAPYGDYWRQVRKIAVTELLTARRVHSFRSIREEEVAALLRAVAVA 139554
139555 AGTVEMRAALSALVSDITARTVFDNRCKDRGEF
       LVLLERTIEFAGGFNPADLWPS 139719 (?) bad exon boundary
140222 SRLAGRLSSVVRRAEECRNSVYKILDGIIQEHQERTSAGGEDLVDVLLRIQKEGG 140386
140387 LQFPLAMDDIKSIIF 140428 (0)
       DIFSAGSETSATTLAWAMAELIRNPTAMHKVMAEVRRAFAAAGAVSEDALGE 140655
140656 LRYLQLVIRETLRLHPPLPLLLPRECREPCRVLGYDVTRGTQVLVNAWAIGLDERYWPGG 140835
140836 SPEEFRPERFEDGEATAAVDFRGTDFEFLPFGAGRRMCPGMAFGLANVELPLASLLFHFD 141015
141016 WEVPGLADPAKLDMTEAFGITARRKADLHLRPCLLVSVPGV* 141141

>AP003571.1c $F chromosome 6 clone P0458E02
AQ328148 49% identical to C72289 58% to AQ327456 61% to AQ259669 
56% to 71B3
106935 MADLHTYLYLGLALVSLLAVQLARRRRSSAAHGSGALRLPPGPWQLPVIGSLHHLVGKL 107111
107112 PHQAMRDLARRHGPVMMLRLGEVPTLVVSSPEAAREVTKTHDVSFATRPLSSTTRVFS 107285
107286 NGGRDIVFAPYGDYWRQLRKITVTELLSARRVASFRAIREEEVAAMLRAVGGYAA 107450
107451 AGCAVEIRPLLAALVSDSTVRAVMGDRFPHRDVFLRELDRSIELTAGFNPADLWPSSRL 107627
107628 AGCLTGTIRQAKKCWDTMSSVLESTIQEHLQKNGSSGGGAGATDEDLIDVLLRIQKEGGL 107807
107808 QFPFDMDVIKSVIH 107846 (0)
110756 NVFGAGSETSATTLGWAIAELIRNPMAMKKATAEVRQAFAAAGVVSEAALSELRYLHLVI 110935
110936 KETLRLHPPGPLLLPRECREQCKVLGYDVPRGTQVLVNVWAIGRDPRYWPGGSPEEFRPE 111115
111116 RFGDGEPAAALDFKGTDYELLPFGAGRRMCPGLAFGLANVELPLASLLFHFDWEVPGMAD 111295
111296 PTKLDMTEAFGIGVRRKADLIIRPILRVPVPGV* 111397

>AP003571.1d $F chromosome 6 clone P0458E02
118418 MADGYFYLGLALVSLLVVLFARRRRSAAAAHGDAGLRLPPGPWQLPVIGSLHHLAGKLPHRAMRDLA 118618
118619 RRHGPVMMLRLGEVPTLVVSSRDAAREVMRTHDAAFASRPLSASVRAATKGGRDIAFAP 118795
118796 YGDYWRQLRKIAVTELLSARRVLSFRPIREEEVAATLRAVAAAAADGRTVELRAA 118960
118961 LCALVADSTVRAVVGERCAGLDVFLRQLDRAIELAAGLNVADLWPSSRLAGRLSGAVRQ 119137
119138 AERCRDTMFGVLDGIIQAHLEKTGGAGEDILDVLLRIHKEGGLEFPLDMDA 119290
119291 VKCVVV 119308 (0)
119451 DVISGGCETSATTLGWAFAELIRNPAAMKKATAEVRRDFEAAGAVSESALAVGELPYLRL 119630
119631 VVRETLRLHPPLPLLLPRECREPCRVLGYDVPRGAQVLVNAWAIGRDERYWPGGSPEEFR 119810
119811 PERFGDGEAAAAVDFKGADFELLPFGGGRRMCPGMAFGFANVELPLASLLFHIDWEASGV 119990
119991 ADPTEFDMTEAFGITARRKANLLLRPILRVPVPGV* 120098

>AP003571.1a $F chromosome 6 clone P0458E02
67847 MADVLSQGYVYLAMALVALLGVLLTKCSRTATAQRRLPPGPWQLPVIGSLHHLIGKLPHHAMRDLTRRHG 68056
68057 PVMMLRLGEVPTLVVSSPEAAQEVMRTHDAVFATRALSATVRAGTMGGRDIAFAPYGDY 68233
68234 WRQLRKIAATELLSAPRVASFRAIREEEVAATLRTVAAAAADGRAVELRAALCAL 68398
68399 VTDSTSRAVVGDRCKESDALIRAFDRSMELASGFNPAADLWPSSRLAGLLSGGVREIEA 68575
68576 NLHTVFGILDRLIEKRLQQKKTAPSSAAGEDILDALLRIHKEGGGLQFPLDMDSIKLIIA 68755 (0)
73915 DLFSGGGETVATLLVWAMAELIRNPMAMQKATTEVRRAFALAGAVSEGKGALGELRYLHL 74094
74095 VIKEASRLHPPAPLLLPRECSEPCQVLGYDVPRGTQVLVNAWAIGRDERCWTGGSGDGSS 74274
74275 PEEFRPERFEDGAEAVDLRGNNFELLPFGAGRRMCPGMAFALANIELTLASLLFHFDWEV 74454
74455 PDMADPAKLDMTETLGITARRKGDLLLRPVLRMPVPGVY* 74574

>AP003571.1b $F chromosome 6 clone P0458E02
80945 MEDASHGYVYLAMAVVALLGVLLTKRSRKATAQRLPPGPWQLPVIGSLHHLAGKLPHHAMRDLARRHG 81148
81149 PVMMLRLGEVPTLVVSSPEAAQEVMRTHDAVFATRALSATVRAATMGGRDIAFAPYGDR 81325
81326 WRQLRKIAATQLLSARRVASFRAIREEEVATMLRAVAAAAADGRAVEMRAALCVV 81490
81491 VADSTARAMVGESCQERDAFLREIDRSMELVSGFNPEDLWPSSRLAGRLSGAVRKIEAS 81667
81668 LHTVLGILDRIIQKRLQEKIGGAGAAAASEDILDVLLRIHKDGGAGGLQVPLDMDDITLV 81847
81848 IT 81853 (0)
83437 SMQLQNAHACALFLTIVSSTYSYSLFNDPPSLHMQDLFSGGGETVATLLVWAMAELIRN 83613
83614 PMAMQKATAEVRRAFALPGVVSEGEGALGELRYLHLVIRETFRLHPPGPLLLPRECSEPC 83793
83794 QVLGYDVPRGTQVLVNVWAIGRDERCWPAAAGGGSPEEFWPERFEDGAEAVDLRGNNFEL 83973
83974 LPFGAGRRMCPGVAFALANIELTLASLLFHFDWEVPGMADPAKLDMAEALGITARRKGDL 84153
84154 LLRPVLRMPVPGV* 84195

>AC091302.3 $F chromosome 3 clone OSJNBb0015I21 69% to 79F2
AC084319 50% to 79B3 complement(join(117988..118644,121556..122530))
122145 MAVTMPPMRAPALVA
122100 MLVVVLVALVRRRRHRSKGAGGRLESLPPGPVGLPVIGNMHQMLVNKPVFRWVHRLLADA 121921
121920 GGEIVCVRLGPVHVVAVTSPEMAREVLRKNDAVFADRPTTFAAESFSVGYRSASISPHGD 121741
121740 QWRKMRRVLTAEILSPATEHRLRGARGEEADHLVRYVLVRCGRDGAAVDVRHVARHFCGN 121561
121560 VIRRLTLGRRHFREPRADDEDAAAPGRDEAEHVDALFATLNYLDAFCVSDYFPALVGLD 121384
121383 LDGQEKVIKKVMRTLNRLHDPVVEERVEEWRLLRKAGERRDVADFLDVLASLDDAAGRPL 121204
121203 LTVEEIKAQTI 121171 (0)
       DIMIATVDNPSNAVEWALAEMMNKPEVMRKAMDELDTVVGRDRLVQESD 118113
118112 VRDLNYLKACIREAFRLHPYHPFNPPRVAMADTTIAGYTIPKGSQVILSRVGLGRNPRVW 117933
117932 DDPLEFRPERHLSPYPAGGRGDAGVVALTEAELRFVSFSTGRRGCPGVSLGTLITVTLFA 117753
117752 RLLQGFEWSKPAGVERVELREEAASLVLAQPLVLQATPRLAAHLYGAGL* 117603

>AL606614.1b $F chromosome 4 clone OSJNBb0011N17 40% to 71A25
23233 MSMASLQAPEFLASCLLLATILFFKQLLAPSSKQRAASPSLPRPRGLPLIGNLHQVGALPHRSLAALAAR 23096
23095 HAAPLMLLRLGSVPTLVVSTADAARALFRDNDRALSGRPALYAATRLSYGQKSISFAPD 22919
22918 GAYWRAARRACMSELLGPPRVRGLRDAREREAAALVAAVAAAGASPVNLSDMVAATSSR 22742
22741 IVRRVAFGDGDGDESMDVKAVLNETQALLGGLWVADYVPWLRWVDTLSGKRWRLERRFRQ 22562
22561 LDALYERVIDDHLNKRKHASDEEDDLVDVLLRLHGDPAHRSTFGSRSHIKGILT 22400 (0)
22059 DMFIAGSDTSAVTVQWAMTELVRNPDVLAKAQHEVRRVVAAGDKVREADLPELHYLR 21889
21888 LVIKETLRLHPAAPLLVPRETTEPFRTAHGVEIPARTRVVVNAMAIHTDPGVWGPDAERF 21709
21708 VPERHRDDADGCAQQHDGFALVPFGIGRRRCPGVHFAAAAVELLLANLLFCFDWRAP 21538
21537 PGREVDVEEENGLAVHKKNPLVLIATKSKRNTGGH* 21427

>AL606614.1a $F chromosome 4 clone OSJNBb0011N17 90% to AL606614.1b
19270 MASLQAPEFLASCLLLLATILLFKQLLAPSSKKRAASPSLPRPKGLPLIGNLHQVGALPHRSLAAL 19073
19072 AARHAAPLMLLRLGSVPTLVVSTADAARALFRNNDRALSGRPALYAATRLSYGQKNISF 18896
18895 APDGAYWRAARRACMSALLGAPRVCELRDAREREAAALIAAVAAAGASPVNLSDMVAAT 18719
18718 SSRIVRRVAFGDGDGDESMDVKAVLDETQSLLGGLWVADYVPWLRWVDTLSGMRRRLERR 18539
18538 FRQLDAFYERVIDDHINKRKHASDEEDDLVDVLLRLHGDPAHRSMFGSRTHIKGILT (0)18368
17337 DMFIAGSDTSAVTVQWAMTELVRNPDVLAKAQHEVRRVIAGGGGGDKDGAMVREADL 17149
17148 PELHYLRLVIKETLRLHPASPLVQRETTEPFRTAHGVEIPARTRVVINAMAIHTDPGVWG 16969
16968 PNAERFLPERHRAHDADGEQQHEHDGFALVPFGIGRRSCPGVHFAAAAAELLLANLLFCF 16789
16788 DWRALPGREVDVEEENGLAVRKKNPLVLIATKSKSNRDAH* 16666

>AP003522.1 $F chromosome 6 clone P0036B02, 37% to 76C2
AP004726.1 chromosome 6 clone P0486G02
AU096446.1 Rice green shoot cDNA clone S13713.Length = 477 49% to 76C2
129851 MAASSFLVECLSWLVVVLFSLYIFQLLRDARRRLPPGPWPPKPLVGDLLDLGEDGKQHRTFLRLAGR 130051
130052 YGGLMCLRFGMVPHVIVSTPDALRAVFAAAGAGGGGGGEGKKVDGIAGLPSLDVLSAMGH 130231
130232 RAHTIFALPSQDGKWRALRKFAAAEMLAPRRISSAAAGAQLQTKIVEALRREVSGHAARG 130411
130412 AAVVFRHAVLDSILSLLLGVLYSTDLEREERAMFRDLIEEIVGMLGTANVSDVFP 130576
130577 PVAALDLQGLRRRMTDLLTIMYRHFDDQVALRRRSRDAGEARKNDVLDTVLDKEES 130744
130745 EWKQEGSLLSHDVMRVLLS 130801 (0)
131025 DLYGAGASTTAALIEWGMVDLIQNPEVMTKVREELTNVLGDKLVMDESDIARLPYLQ 131195
131196 AVVKETLRLRTVVPLVPRKAEVDIEVNGYRIPKGTNVILNAWAINRSADAWSEPDKFIP 131372
131373 ERFLGGETRGYLGQDFEMIPFGLGRRICPGMPLAQKLIPLIIGTLLHRFEWELPADAK 131546
131547 EGGIDMTEKCGVVLSLVNPLKAIPKEI* 131630

>AP003990.1a $F chromosome 2 clone OJ1073_F05 42% to 71B24
AQ259671 323-379 region I-helix 55% to 71B4
AQ691116.1 nbxb0088K01f CUGI Rice BAC genomic clone Length = 544
7359 MADLELEKVASFLLAALLPLVLFKLAAAKRGGGDGGMRLPPGPWRLPVIGNLHQIMAGGQ 7538
7539 LVHRTMAGLARGLGDAPLLSLRLGEVPIVVASSADAAREIMSRHDAKFATRPWSPTVRVQ 7718
7719 MVDGEGLAFAPYGALWRQLRKITMVELLSPRRVRSFRRVREEEVGRLVVAVATAA 7883
7884 TRRPGEAAVNVGERLTVLITDIAVRTIIGDRFERREDFLDAAAEWVKIMSGFSLGDLFPS 8063
8064 SRLASFVSGTVRRAEANHRKNFELMDYALKQHEEKRAAAAAAGAGAVEDDEDIVDVLLRI 8243
8244 QKEGGLEVPLTMGVIKGVIR 8303 (0)
8551 DLFGAGSETSANTLQWTMSELVRNPRVMQKAQTELRDCLRGKQSVSEDDLIGLKY 8715
8716 LKLVIKETLRLHPVVPLLLPRECQETCNIMGYDVPKGTNVLVNVWAICRDPRHWENAETF 8895
8896 IPERFEDSTVDFKGTDFEFIPFGAGRRMCPGLAFAQVSMELALASLLYHFDWELPSGVA 9072
9073 PSNLDMEEEMGITIRRKNDLYLVPKVRVPL* 9165

>AP003990.1b $P chromosome 2 clone OJ1073_F05 
11020 MEKVAWCACFLFLALMVVRLRTKRRGDNNGGVKLPPGPWRLPLVGNLHQVMARGPLVHRTMADLA 11214
11215 RRLDAPLMSLRLGEVPVVVASSADAAREITKTHDVAFATRPWSSTIRVMMSDGVGLVFAP 11394
11395 YGALWRQLRKIAMVELLSARRVQSFRRIREDEVGRLVAAVAAAQPGEAVNV 11547
11548 SERIAALVSDAAVRTIIGDRFERRDEFLEGLAEGIKITSGFSLGDLFPSSRLASFIGGTT 11727
11728 RRAEANHRKNFELMECALKQHEEKRAAAAAAAAGAVEDDEDIVDVLLRIQKEGSLQVPLT 11907
11908 MGNIKAVVL 11934 (0)
12556 DLFGAGSETSANTLQ*AMAELIMNPRTMLKAQAELRDALQGKQIVSEYDLVKLKYLKL 12729
12730 IIKETLRLHPVVPLLLPRE 12786 frameshift
      CQETCKVMDYDVPIGTIVLVNMWVIGRDPKYWEDAKTFRPERFEDGHIDFKGMNF 12955
12956 EYLPFGAGRRMCPGVAFAEAIMELALASLLYHFDWEFPDGISPAKMDMMEVMGSTVRKKN 13135
13136 DLYLVPNAHVPVAP* 13180

>AP003990.1c $F chromosome 2 clone OJ1073_F05 one in frame stop at W 
AQ259669 61% identical to AQ328148 53% to 76C2 also has stop at W
AQ690680.1 nbxb0082B18f CUGI Rice BAC genomic clone Length = 768
AQ579195 nbxb0084A11f AQ509836 nbxb0094K16f 72% identical to AQ259671
16507 MEKVAWCACFLLLALMVVRLTAKRRGDNGAERLPPGPWRLPLVGNLHQVMARGPLVHRTMADLARRLD 16710
16711 APLMSLRLGEVPVVVASSADAAREIMRTHDVAFATRPWNPTTRRLRCDGEGVVFATYGAL 16890
16891 WRQLRKLCVVELLGARRVRSFRRVREEEARRLVAAVAASPRGEAVNVSERI 17043
17044 TAVITDATMRAMIGDRFGRRDEFLELLADIVKIGSGFSLDDLFPSWRLAGAIGGMARRAE 17223
17224 ANHRRTYELMDSVFQQHEQRRVHVAAPADGAMDDAEEDLVDVLFRIQKDGGLEVPLTIGN 17403
17404 IKAIIL 17421 (0)
17795 DLFNAGSETSANTLQWVMSELMRNPKVMRKAQAELRNNLQGKTTVTEDDLTNLKYLKL 17968
17969 VIKETLRLHPVLPLLLPRECREACNVIGYDVPKYTTVFINV*AINRDPKYWDMAEMFKPE 18148
18149 RFDNSMIDFKGTDFEFVPFGAGRRICPGIAFAQSNMELVLATLLYYFDWELPSGMSPEE 18325
18326 LDMTEDMGLSVRRKNDLYLHPTVCVPL* 18409

>AP003990.1d $F chromosome 2 clone OJ1073_F05 
27391 MEQVSCFAAAAAVVVVVLLLARMLLAPRGEWDGLNLPPSPPRLPFIGSFHLLRRSPLVHRALADVARQL 27597
27598 GSPPLMYMRIGELPAIVVSSADAAREVMKTHDIKFASRPWPPTIRKLRAQGKGIFFEPYG 27777
27778 ALWRQLRKICIVKLLSVRRVSSFHGVREEEAGRLVAAVAATPPGQAVNLTE 27930
27931 RIEVVIADTTMRPMIGERFERREDFLELLPEIVKIASGFSLDDLFPSSWLACAIGGSQRR 28110
28111 GEASHRTSYELVDSAFRQRQQQREAMAASPPDIAKEEEDDLMDELIRIHKEGSLEVPLTA 28290
28291 GNLKAVIL 28314 (0)
28577 DLFGAGSETSSDALQWAMSELMRNPRVMEKAQNEVQSILKGKPSVTEADVANLKY 28741
28742 LKMIVKETHRLHPVLPLLIPRECQQTCQIMGYDVPQGSVIFINSWAIMRDPKHWDDAETF 28921
28922 KPERFEDGEIDLKGTNYEFTPFGAGRRICPGLALAQASIEFMLATLLYHFDWELPNRAA 29098
29099 PEELDMTEEMGITIRRKKDLYLLPTLRVPLTA* 29197

>AP003990.1e $F chromosome 2 clone OJ1073_F05 
33613 MEQVSCFAAAAAAVLVVLSLARMLLAPRREWD
33709 GLNLPPSPSRLPFIGSFHLLRRSPLVHRALADVVRQLGAPPLMYMEIGEVPAIVVSCADA 33888
33889 AREIMKTHDINFASRPWPPTVQKLRAQGKGIFFEPYGALWRQLRKICIVKLLSVRRVSSF 34068
34069 HGVREEEAGRLVAAVAATPPGQAVNLTERIKVAIADTTMRPMIGERFERRE 34221
34222 DFLEVLPEIVKLASGFSLDDLFPSS 34296
      GSPAPSAARGEAVNRASYELVDSAFRQRQQQKEAMAAPPPDIAKEE
      EDDLMDELIRIHKEGSLEVPLTAGNLKAVIL 34528 (0)
34777 ELFCAGSETSSNAIQWAMSELVRNPKVMEKAQNEVRSILKGKPTVTEADMVDLTY 34941
34942 VKMIVKETHRLHPVLPLLTPRVCQQTCQIMGYDVPQGSVIFIKSWAIMRDPKHWDDAETF 35121
35122 KPERFEDSEIDLKGTNYEFTPYGAGRRICPGLALAQVSIEFILTMLLYHFNWELPNGAA 35298
35299 PEELDMTEDMGLTIRRKNDLYLLPTLRVPLTA* 35397

>AP003990.1f $F chromosome 2 clone OJ1073_F05 
38238 MYDAVACVVAVVVVVVFAMLWVKLARSGDGGGGGSGGVRLPPGPWRLPVIGSLHHVVGDRLLHRSMA 38438
38439 RIARRLGDAPLVYLQLGEVPVVVASSPGAAREVTRTHDLAFADRALNPTARRLRPGGAGV 38618
38619 ALAPYGALWRQLRKICVVELLSARRVRSFRRVREEEAGRLVGALAAAAASPGEEA 38783
38784 AVNFTERIAEAVSDAALRAMIGDRFERRDEFLQELTEQMKLLGGFSLDDLFPSSWLASAI 38963
38964 GGRARRAEANSRKLYELMDCAIRQHQQQRAEAAVVDGGAGVEDDKNQDLIDVLLNIQKQG 39143
39144 ELETPLTMEQIKAVIL 39191 (0)
39428 DLFSGGSETSATTLQWAMSELIKNPMVMQKTQAELRDKLRRKPTVTEDDLSGLKYVKL 39601
39602 IIKETLRLHPVVPLLVARECRESCKVMGYDVPKGTTVFVNAWAIGRDPKYWDDAEEFRPE 39781
39782 RFEHSTVDFKGIDLEFIPFGAGRRICPGMAFAEAIMELLLAALLYHFDWELPNGMAASE 39958
39959 LDMTEEMGITVRRKNDLHLRPHPPCVVRSNFRSFVERERERHFV* 40093

>AP003990.1g $P chromosome 2 clone OJ1073_F05 pseudogene
42530 MDHVLACVGILVAFTPLFLLAVLPLKLTNGGDGVKLPPGPWRLPVIGSMHHLMGESLVHRAMAD 42721
42722 LARRLDAPLMYLKLGEVPVVLASSPCAAREIMRAHDVAFASRPLSPTVRRMR 42877
42878 PPPPRRRQLRKICVVELLSARRVRTFRRVREEEVARLVGALVCLAHVA 43021 gap
      AMIGARFERRDEFLE
      missing mid region
43862 DLFSGGSETSATVIQWAMSELMKNPRVMRKVQAELRDKLAGKPRVTEDDLSDLKYLKL 44035
44036 VIKETLRLHPAAPLLVPRQCREPCKIMGYDIPKGTTVFVNAW 44161 frameshift
44161 AIGRDPNYWDDAEVFRLERFANSTIDFKGMDMEFIPFGAGRRMCSGLAFAEAIIDLLFS 44337
44338 TLLFHFDWELPCGMTASELDMIEEMALTVRRKNDLHLRPILRVPQTQTSSALLF* 44502

>AP003990.1h $F chromosome 2 clone OJ1073_F05 
66403 MATELTEYLLLLPLLVVPLLYLAASSSRRSGRLRLPPGPWALPVIGHLHHLALAGAPTHR 66582
66583 AMRDMARRHGPLMLLRFCELPVVVASSPDAAREIMRTHDVAFASRPIGPMLRLVFQGAEG 66762
66763 VIFAPYGDGWRQLRKICTVELLSHRRVHSFRPVRADELGRLLRAVADQAASSSS 66924
66925 SPVNLTGMISAFVADSTVRAIIGSRSRHRDTFLRLVEDGLKIMPGMSLPDLFPSSRLAML 67104
67105 LSRVPAKIERRRRGMMGFIDTIIQEHQESRAAAEDEDLLDVLLRLQKDMDSQYPLTTMN 67281
67282 IKSILI 67299 (0)
67380 DMFGAGSETSATTLQWAMAELMRNPAVMRRAQDEVRRELAVAGNDRVTEDTLPSLHYL 67553
67554 RLVIKETLRLHPPAPLLLPRECGGACKVFGYDVPAGTMVLVNAWAIGRDAAAWGAAAEEF 67733
67734 SPERFERCERDFRGADFELIPFGAGRRICPGMAFGLAHVELALAALLFHFDWRLPGGMA 67910
67911 AGEMDMTEAAGITVRRRSDLLVFAVPRVPVPAQ* 68012

>AP003990.1i $F chromosome 2 clone OJ1073_F05 
68586 MPLVVLLLATIPLLFFTIKRSAQRRGGGGGGEGRLPPGPWALPVIGHLHHLAGDLPHRA 68762
68763 LSALARRHGALMLLRLGEVQAVVASSPDAARDIMRTHDAAFASRPLSPMQQLAYGRDAEG 68942
68943 VIFAPYGDGWRHLRKICTAELLSARRVQSFRPVREAELGRLLRSVAEATSSSSSA 69107
69108 SLVNLTELISAFVADSTVRAIIGSRFEHRDAYLRMLQDGLKIVPGMTLPDLFPSSRLALF 69287
69288 LSRVPGRIEHHRQGMQRFIDAIIVEHQEKRAAAAANDDDDEDEDFLDVLLKLQKEMGSQH 69467
69468 PLTTANIKTVML (0) 
      DMFGAGSESSATVLQWT 69647
69648 MAELMRNPRVMQKAQDEVRRALAGHDKVTEPNLTNLPYLRLVIKETLRLHPPAPLLLP 69821
69822 RKCGSTCKILGFDVPEGVMVIVNAWAIGRDLTYWDKPEEFVPERFEHNGRDFKGMDFEF 69998
69999 IPFGAGRRICPGITFGMAHVELVLSALLYHFDWELPQGMAAKDLDMTEDFGVTTQRRSNL 70178
70179 LVRPIHRVSVPVE* 70220

>AP003990.1j $F chromosome 2 clone OJ1073_F05 
70828 MAGELAFYLLLVGLVAVPLLILLGSERRTAARTRLPPGPWALPVVGHLHHLAGGLPPHRA 71007
71008 MRDLARRHGPLMLLRLGEVEAVVASSPDAAREIMRTHDVAFASRPVGPMSRLWFQGADGL 71187
71188 VFAPYGEAWRRLRRVCTQELLSHRRVQSFRPVREDELGRLLRAVDAAAAAGT 71343
71344 AVNLTAMMSTYVADSTVRAIIGSRRLKDRDAFLRMLDELFTIMPGMSLPDLFPSSRLAML 71523
71524 VSRAPGRIMRYRRRMRRIMDSIIHEHQERRAAADAAGDDDDDDDEDLVDVLLRLQKEVGA 71703
71704 QYPLTTENIKTVMM 71745 (0)
71837 DIFGAASETSSTTLEWVMAELMRSPSAMRKAQDEVRRALAAGAAGHDTVTEDILPNLSYL 72016
72017 KLVVKETLRLHPPAPLLAPRRCDSPREVLVLGHDVPAGATVLVNAWAIGRDTAAWGGAA 72193
72194 EEFSPERFERCERDFRGADFELIPFGAGRRMCPGMAFGLVHVELALAALLFHFDWSLPG 72370
72371 GMAADELDMAESSGLTTRRRLPLLVVARPHAALPTKYCN* 72490

>AP004000.1a $F chromosome 2 clone OJ1115_B01
95316 MAMVQDITGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMGGPLVHRTMADLA 95101
95100 RRLDAPLMSLRLGELRVVVASSANAAREITKTHDVAFATRPWTSTIRVLMSDGVGLVFAP 94921
94920 YGALWRQLRKIAVVELLSARRVQSFRRIREDEVGRLVAAVAAAPAAQPVNV 94768
94767 SERIAALISDSAVRTIIGDRFERRDEFLEGLAEAIKITSGFSLGDLFPSSRLASFVGGTT 94588
94587 RRAEANHRKNFELIECALRQHEERRAAGAVDDDEDLVDVLLRVQKDGSLQMPLTMGNIKA 94408
94407 VVL 94399 (0)
93945 ELFGAGSETSANTLQWAMTELIMNPRVMLKAQAELSNVIKGKQTISEDDLVELKYLKL 93772
93771 IIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTVLVNVWAIGRDPKYWEDAETFIPE 93592
93591 RFEDGHIDFKGTNFEFIPFGAGRRMCPGMAFAEVIMELALASLLYHFDWELPDGISPTK 93415
93414 VDMMEELGATIRRKNDLYLIPTVRVPLSTVL* 93319 

>AP004000.1b $P chromosome 2 clone OJ1115_B01 pseudogene fragment
101503 RVVASSTDAACREFTKTHDVKFATRPWSSTVRVLMADGLG 101393

>AP004000.1c $F chromosome 2 clone OJ1115_B01
109813 MAMVQYVTGYLCLLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRL
       PVIGNLHQVAMGGPLVHRTMADLA 109595
109594 RRHDAPLMSLRLGELRVVVASSADAAREITKTHDVAFATRPWSSTIRVMMSDGVGLVFAP 109415
109414 YGALWRQLRKIAVVELLSARRVQSFRRIREDEVCRLVAAVAAAQPGEAVNV 109262
109261 SERITALISDSAVRTIMGDRFEKRDEFLEGLAEGDRIASGFSLGDLFPSSRLASFVGGTT 109082
109081 RRAEANHRKNFGLIECALRQHEERRAAGAVDDDEDLVDVLLRVQKEGSLQVPLTMGNIKAVIL 108893 (0)
107479 ELFGAGSETSASTLHWAMTELIMNPKVMLKAQDELSNVIKGKQTISEDDLVELRYLKL 107306
107305 VIKETLRLHPVVPLLLPRECRETCEVMGYDIPIGTTMLVNVWAIGRDPKYWEDAETFRPE 107126
107125 RFEDGHIDFKGTDFEFIPFGAGRRMCPGMAFAEAIMELVLASLLYHFDWELPDGISPTK 106949
106948 VDMMEELGATIRKKNDLYLVPTVRVPMSTAL* 106853 

>AP004000.1d $F chromosome 2 clone OJ1115_B01
123850 MEEPTSCYGYYHYLALAVAVLVLVRVTRTRGGGSDGVRLPPGPWRLPVIGSLHHLAGKPLVHRALAD 124050
124051 LARRMDAPLMYLRLGEVPVVVATSPGAAREVMRTHDVAFATRPVSPTVRIMTADGEGLVF 124230
124231 APYGALWRQLRRIAILELLSARRVQSFRRVREEEAARLAAAVAAAAPHGEAAV 124389
124390 NVSERIAVLIADSAVRAMIGDRFKKRDEFLEALAEGLKLVSGFSLADLFPSSWLASFVTG 124569
124570 AARRAQENHRKNFELMDRAIEQHQERRAAAAAASGDVVEDDDLVDVLLRIQKGGGLDVPL 124749
124750 TMGIIKAVIL 124779 (0)
124917 DLFSAGSETSATTIQW AMSELMRNPRVMKRAQAELRDNLQGKPKVTEEDLTDLNYLKL 125090
125091 IIKETLRLHLPAPLLLPRESRESCKIFGYDVPKGTTVLVNAWAIGRDPKYWDDPEEFKPE 125270
125271 RFEDSKIDFKGLDFEFLPFGSGRRMCPGIMFAQPNIELALATLLYHFDWSLPAGVKPSE 125447
125448 LDMTEEMGITVRRKNDLYLHAVVRVPLHATTP* 125546

>AP004000.1e $F chromosome 2 clone OJ1115_B01
AP004066.1 chromosome 2 clone OJ1572_F02, 55% to 71B17 aa 342-511 runs off beginning
contig of AA751324 and AQ327456 54% IDENTICAL TO 71B24   1/98 K-HELIX 
58% identical to AQ328148
127153 MAQDVAEYLSIFLALVVAPLLLLRVARRARGNGAGRPRLPPGPWRLPVIGSLHHLMGKPHVHRAMA 127350
127351 DLARRHGAPLMYLRLGEVPFVVASSPDAAREVLRAQDANFASRPWSPTLRVMMADGEGLA 127530
127531 FARHGAHWRLRKICVLELLGPRRVRSFRRVREEEVARLLAAVAAAAAAGADAV 127689
127690 VNVSERAAVLVTDTX 127731 frameshift
127734 VRAMIGDRFEMRDEYLEGVAEVGKLLLGLSLGDLFPSSRLASLVSGTARRAAASHRKMFE 127913
127914 LMDCAIRHHQERKAAMDADEDILDVLLRIQKEGGHDAPLTMGDVKDTIL 128060 (0)
128189 DLFAAGTETSTATLQWAMSEVVRNPRIMQKAQAELRNKLQGKPSVTEDDLVGLTYLKL 128362
128363 VIKETLRLHPAAPMLVPRECGESCKVLGYDVPRGTNVLINAWAIGRDPNYWDDTETFKPD 128542
128543 RCENNKYNFRGTDFEYIPFGSRRKICPGPAFTHAILELALAALLYHFDWELPCGVAPGE 128719
128720 VDMAEETGVVVRPKNDLYLRPVVRVPPGAASSGNGGT* 128833

>AP004688.1 $F chromosome 6 clone P0036C11, Length = 137929
New seq similar to AP004000 37% to 71B23 52% to AP003523.1 78% to AP004684.1b  
57304 METAELCCLLALLPLVYCLLTLFHGSRESDLRLPPGPWRLPLIGSLHHLFGRTLPHRA 57477
57478 LRDLARLHGPLMLLSFGQAAPVVIASTAIAAREIMRTHDDNFSTRPLSTVLKVCTRYGA 57654
57655 GMTFVPYGEHWLQVRKICSLELLSPRRILKFRSIREEEVARLVLAIASSSTPTPTPPAPV 57834
57835 NLSKLLSNYMTDATVHIIMGQCFRDRDTLVRYVDEAVRLASSLTMADLFPSWRLPRVMCA 58014
58015 TTLHRAEVFVESVMEFMDRVISEHLEKRSCQGGDREEDLIDVLLRLQAEGNLEFELSTSI 58194
58195 IKAIIF 58209 (0)
58290 ELLAGGSEAPITTLQWAMAELMRNPDVMSRAQAEVREAYKEKMKVTEEGLTNLPY 58469
58470 LHCIIKETLRLHTPGPFVLPRKCQEQCQILSYDVPKRATVVVNIWAICRDAEIWDEPEKF 58649
58650 MPDRFEGSAIEHKGNHFEFIPFGAGRRICPGMNFALANMELALASLLFYFDWSLPEDVLP 58829
58830 GDLDMTETMGLTARRKEDLYVCAIPFVQLP* 58919

>AC092559.2 $F chromosome 3 clone OSJNBb0096M04, 45% to 71B37
same as AC096688.3 chromosome 3
96529 MATLLSKLLALPQQWQLLLLLLLLPIASLLLVIGRNTGGRRRRRHLR
96388 LPPGPARLPVLGNLLQLGALPHRSLRDLARRHGPVMMLRLGAVPAVVVSSPEAAQEVLR 96212
96211 THDADCCSRPSSPGPMRLSYGYKDVAFAPYDAYGRAARRLFVAELFSAPRVQAAWRARQDQ 96017 (0)
94678 VEKLIGKLTRPEPEPVELNDHIFALTDGIIGAVAFGSIYGTERFAGGGRKRFHHLLDDVMDMLASFSAEDFFPNA 
94454
94453 AAARLFDHLTGLVAHRERVFQQLDAFFEMVIEQHLDSDSSNAGGGGGNLVGALIGL 94286
94285 WKQGKQYGDRRFTRENVKAIIF 94220 (0)
94119 DAFIGGIGTSSVTILWAMAELMRSPRVMRKVQAEIRATVGDRDGGGMVQPDDLPRLAY 93946
93945 LKMVVKETLRLHPPATLLMPRETMRDVRIGGYEVAARTRVMVNAWAIGRDAARWEEAEVF 93766
93765 DPDRFEAKRVEFNGGHFELLPFGSGRRICPGIAMGAANVEFTLANLLHCFDWALPVGMAP 93586
93585 EELSMEESGGLVLHRKAPLVLVPTRYIQL* 93496 

>AP004346.1a $F two genes and a pseudogene
71B like 47% to AC092559.2 75% to AP004346.1b
22020 MADDFLSSQPQPW 22058
22059 PPLLQLSAAVLFFLLPLLYLLFLRGSNGEVRGRQGNSASAPSLPGPCRQLPVLGNLLQIG 22238
22239 SRPHRYFQAVSRRYGPVVQVQLGGVRTVVVHSPEAAEDVLRTNDVHCCSRPPSPG 22405 (2)
26427 SYNYLDVAFAPYSDYWREMRKLFVVELTSVSRVRSFAYARAAEVARLVDTL 26577
26578 AASPPGVPVDLSCALYQLLDGIIGTVAFGKGYGAAQWSTERAVFQDVLSELLLVLG 26745
26746 SFSFEDFFPSSALARWADALAGVERRRRRIFRQVDGFLDSVIDKHLEPERLSAGVQED 26919
26920 MVDALVKMWREQQDRPSGVLTREHIKAILM 27009 (0)
28586 NTFAGGIDTTAITAIWIMSEIMRNPRVMQKARAEVRNTVKNKPLVDEEDSQNLKYLEMIIKEN 28774
28775 FRLHPPGNLLVPRQTMQPCLIGGYNVPSGTRVFINIWAMGRGPMIWDNPEEFYPERFE 28948
28949 DRNMDFRGSNFELVPFGSGRRICPGVAMAVTSLELVVANLLYCFDWKLPKGMKEEDIDM 29125
29126 EEIGQISFISFRRKVELFIVPVKHEQYQLMGHIN* 29221

>AP004346.1b $F two genes and a pseudogene 48% to AC092559.2 75% to AP004346.1a
69192 MATELLASQLLPWQPLVQLLAAGLFLLPLVYLLFFKGDGNGG 69317
69318 VMDSASAPSPPGPPRQLPVLGNLLQIGSRPHRYFQAVARRYVPVVQVQLGSIRTVVVHS 69494
69495 PEAAKDVLRTNDLQCCSRPSSPG 69565 (2) 
72047 NYNYLDVAVSPYS 72083 (frameshift)
72085 YWREMRKLLVIELTSIRRVQSFAYARAAEVARLVDTLAASPAGVPVDLSSALYTF 72249
72250 SDGVIGTVAFGKVYGSAAWSSWEWGASFQEAMDETMQVLGSFSFEDFFPSSALARWADALTGA 72438
72421 AGRRRRVFHRIDGFFDAVIDKHLEPERLSAGVQEDMVDAMVMVWREQKDEAFGLTRDHIKAILL 72630 (0)
84351 DAFVGGIDTTAVTVTWIMSELMRNPRVMQKAQAEVHNIVKNKSKVCEEDIQNMKYLKM 84524
84525 IIKENFRLHPPGTLLIPRQTMKTCTIGGYSVPSETRIYVNVWAMGRDPNIWDNPEQFY 84698
84699 PERFEDKGIDFRGSHFELLPFGSGRRICPGIAMGVANVELVVANLLYCFNWQLPKGMKEE 84878
84879 DIDMDEIGQLAFRKNFLF* 84935

>AP004346.1c $P two genes and a pseudogene
probable pseudogene 89% to AP004346.1b
92865 DAFAGGIDTTVVTTTWIMSELMRNPRVMQK 92954 (frameshift)
92956 AQAEVHNIVKNKSKVYEENIQNMKYLKMIIKENCRLHPPGTLLIPRHTMKTCTIGGYSV 93132
93133 PSKRRIYVNVWAMWRDPNIWDNLEQFYLERFEDKGIDFRGSHFELLT 93273 (insertion)
93561 FGSGQRICPGIAMGVANVELVVANLLYCFDWQLPKGMKEEDTDMDEIG*LAFRKKLPLFI 93740
93741 VPMKH* 93758

>AL606625.1 $F chromosome 4 clone OSJNBa0032I19 similar to 71B28 = AQ858445.1
AQ858445.1 nbeb0013M22r CUGI Rice BAC genomic Length = 824 54% to 71B23
82576 MGASILLVVVVSKLMISFAAKPRLNLPPGPWTLPLIGSIHHVVSSRESVHSAMRRLARRHGAPLM 82770
82771 QLWFGEVGTVVASSPEAAREVLRSHDLAFADRHLTAAAAAFSFGGRDVVLSPYGERWRQL 82950
82951 RKLLTQELLTASRVRSFRRVREEEVARLMRDLSAAATAGAAVNLSEMVTRMVNDTVLRCS 83130
83131 VGSRCEHSGEYLAALHAVVRLTSGLSVADLFP 83226
83227 SSRLAAMVSAAPRAAIANRDKMVRIIEQIIRERKAQIEADDRAADSKSC 83373
83374 ACSLDDLLRLQKEGGSPIPITNEVIVVLLM 83463 (0)
84970 DMFAGGTDTSSTTLIWAMAELIRSPRVMAKVQSEMRQIFDGKNTITEDDLVQLSY 85134
85135 LKMVIKETLRLHCPLPLLAPRKCRETCKIMGYDVPKGTSAFVNVWAICRDSKYWEDAEEF 85314
85315 KPERFENNDIEFKGSNFEFLPFGSGRRVCPGINLGLANMEFALANLLYHFDWKLPNGMLH 85494
85495 KDLDMREAPGLLVYKHTSLNVCPVTHIASSCA* 85593

>AP003909.1a $F chromosome 8 clone OJ1300_E01 55% to 71C4
50394 MAQMLDGLRHDEQASLHAPQEASTMPTMSCSD
50298 LLLAMMCPLILLLIIFRCYAYATRSGGMLSRVPSPPGRLPVIGHMH 50161
50160 LISSLPHKSLRDLATKHGPDLMLLHLGAVPTLVVSSARTAQAILRTHDRVFASRPYNTIA 49981
49980 DILLYGATDVAFSPYGDYWRQIKKIVTMNLLTIKKVHSYGQTRQQEVRLVMAKIVEEAAT 49801
49800 HMAIDLTELLSCYSNNMVCHAVSGKFFREEGRNQLFKELIEINSSLLGGFNLEDYFPSLA 49621
49620 RLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLSIQQEY 49441
49440 GLTKDNIKANLVVMFEAGTDTSYIELEYAMAELIQKPQLMAKLQAEVRGVVPKGQEIVTE 49261
49260 EQLGRMPYLKAVIKETLRLHPAAPLLVPHVSMVDCNVEGYTIPSGTRVIVNAWAIARDPS 49081
49080 YWENAEEFMPERFLSNTMAGYNGNNFNFLPFGTGRRICPGMNFAIAAIEVMLASLVY 48910
48909 RFNWKLPIDQAANGGIDMTETFGITIHLKEKLLLVPHLP* 48790

>AP003909.1b $P chromosome 8 clone OJ1300_E01, 4 in frame stops pseudogene 
54948 MAQMLGALLLFQDSLMSTMTRMSY
54876 SLLLPILCPLILLLLFRCYAYATRSGGMLDKLPSPPGRLPLIGHM 54742
54741 HLIGFFPHMSLRDLATDLMLLHLGTVPTLVVSSSRMAQVILRTHDRVFASR*QSAI 54574
54573 TDILF*GATDVAFSPYGDYWRQIKKIVTTNLLTIKKIRSYSQTRQQEVRLVMAKIVEEAA 54394
54393 THMAIDLTELLSCYSNNMVCHAVSGMFFCEEGRNQLFKELI*INSSLLGGFNIEDYFPSL 54214
54213 ARLPVRRLLYAKAYDVKKRWDQLLDKLIDDHSSKHRSSLLDNNDVESDFIDVLLSIQQE 54037
54036 YGLTKDNIKANLAIMFEAGTDTSFIELEYSMAELM*KPQMIAKLQAEVRGVVSKGQDIVT 53857
53856 EEHLGRMPYLKAVIKETLRLHPAAPLLAPHVSVVDCNVEGYTIPSGTRVIVNAWAIARDP 53677
53676 SYWENAEEFMPERFLSNTMADYNGNNFNFLPFRTGRRICPGINFAITTIEIMLASLV 53506
53505 YRFDWKLFTSRIDMTETFGATIHLKEKLFLVPHLPQDN* 53389

>AP003909.1c $F chromosome 8 clone OJ1300_E01 
same as AP004462.1 152574-152287 region
58316 MAVMLVPIPLLLLHQHHNHEHEHPSPVAPQPTM
58217 ASYYTLLLALLCPLLLLLIKLCRAKTRDDELFDKLPSPPGRLPV 58086
58085 IGHLHLIGSLPYVSFRELAIKHGPDLMLLRLGTVPTLVVSSARAAQAILRTNDHVFASRT 57906
57905 YSAVTDILFYGSSDVAFSPYGEYWRQVKKIATTHLLTNKKVRSYSRARQQEVRLVMARIN 57726
57725 EAAVARTTVDLSELLNWFTNDIVCHAVSGKFFREEGQNQMFWELIQANSLLLGGFNLEDY 57546
57545 FPNLARVTTVRRLLCAKAHNVNKRWDQLLDKLIDDHATKRSSSVLDLDNEESDFIDVLLS 57366
57365 IQHEYGLTRDNVKAILVIMFEGGTDTAYIELEYAMAELIRKPQLMAKLQAEVRSVVPRGQ 57186
57185 EIVTEEQLGRMPY 57153 frameshift
57147 LKAVIKEMLRLHLAGPLLVPYLSIAECDIEGYTIPSGTRVFVNAWALSRDPSFWENAEEF 56968
56967 IPERFLNSIAPDYNGNNFHFLPFGSGRRICPGINFAIATIEIMLANLVYRFDWEIPA 56797
56796 DQAAKGGIDMTEAFGLTVHRRRSSSLFLGSHKIK* 56692

>AP003909.1d $F chromosome 8 clone OJ1300_E01 
AQ868830.1 nbeb0032E11f CUGI Rice BAC genomicLength = 759 57% to 76C5
same as AP004462.1 139663-140091 region
68223 MELNNTEPLTASRAQAAAVFLLLPVALLLLLLRFARATTMAGDRNSELLLSKLPS 68387
68388 PPLRLPVIGHMHLVGSLPHVSLRDLAAKHGRDGLMLVHLGSVPTLVVSSPRAAEAVLRTH 68567
68568 DLAFASRPRAMVPDIITYGATDSCYGPYGDHFRKVRKAVTVHLLNSHKVQAYRPAREEEV 68747
68748 RLVIAKLRGAAAMAGAPVDMTELLHSFANDLICRAVSGKFFREEGRNKLFRELIDTNASL 68927
68928 LGGFNLEDYFPSLARTKLLSKVICVRAMRVRRRWDQLLDKLIDDHATRLVRRHDHDQQQD 69107
69108 SDFIDILLYHQEEYGFTRDNIKAILV 69185 (0)
69331 DMFEAGTDTSYLVLESAMVELMRKPHLLAKLKDEVRRVIPKGQEVVNEDNIVDMVYLKAV 69510
69511 IKETLRLHPPAPLYIPHLSREDCSISGYMIPTGIRVFVNAWALGRDAKFWDMPDEFLPER 69690
69691 FMDSNIDFKGHDFHYLPFGSGRRMCPGIHSATVTLEIMLANLMYCFNWKLPAGVKE 69858
69859 EDIDMTEVFGLTVHRKEKLFLVPQAA* 69939

>AP003909.1e $F chromosome 8 clone OJ1300_E01 
same as AP004462.1 128584-129021 region
78935 MELILQLEAKTAAQAVVTVFFFFLLPLALLFYFARAAISSRDSKTRELILSKLPSPPFK 79111
79112 LPVIGHMHLIGPLPYVSLRDLAAKHGRDGLMLVRLGSVPTLVVSSPRAAEAVLRTHDLAF 79291
79292 ASRPRSMVTDIIMYGALDSCFAPYSDHFRSVKKVVTVHLLNSKRVQAYRHVREEEVRLVM 79471
79472 ARLRGAAAAAAAVDLSQTLQFFANDLICRAVSGKFLCEQGRNKVFRDLMEANSNLLGGFN 79651
79652 LEAYFPGLARMPLISKLICARAIRIRRRWDQLLDMLIDDHVASARDRAKNDDDDFIHVL 79828
79829 LSLQDEYGFTRDHIKAISI 79885 (0)
80359 DMFEAGTDTSHLVLEYAMVELTRKPHILTKLQDEVRRITPKGQHMVTEDDIVGMVYLKAV 80538
80539 IKETLRLHAPGGFTIPHLAREDCNVDGYMIPAGTRVLINLWALSRDANYWDKPDEFLPER 80718
80719 FMDGSNKNTDFKGQDFQFLPFGSGRRMCPGIHSGKVTLEIMLANLVYCFNWKLPSGMKK 80895
80896 EDIDMTDVFGLAIHRKEKLFLVPQIANY* 80982

>AP003909.1f $F chromosome 8 clone OJ1300_E01 
AZ127316.1 OSJNBb0086E03f CUGI Rice BAC genomic Length = 498 54% to 71A14
AQ871024.1 nbeb0042C09f CUGI Rice BAC genomic Length = 495 56% to 71B23
same as AP004462.1 147428-146820 region
63826 MVVQLMLFFHDKFMAPMAEEPLPFVLIMIII
63733 LLLLVLLHYYLSASTRRSSAASKSNDDVLPPSPPRLPVIGHMHLVGSNPHV 63581
63580 SLRDLAEKHAADGFMLLQLGQVRNLVVSSPRAAEAVLRAHDHVFASRPRSAIADILAYGS 63401
63400 SNISFSPYGDYWRKARKLVAAHLLSPKKVQSLRRGREEEVGIAVAKLHEAAAAGAAVDMR 63221
63220 ELLGSFTNDVLCRAVCGKSSFRREGRNKLFMELAAGNADQYAGFNLEDYFPSLAKVDLLR 63041
63040 RVVSADTKKLKEKWDSVLGDIVSEHEKKSSLRRDDQVQMDDDRDDDQEEQESDFVDILLD 62861
62860 RQQEYNLTRHNIHAILM 62810 (0)
62626 DMFAAGTDTSYIALEFAMSELIRKPHLMTKLQDEVRKNTTTQMVSEDDLNNMPYLKAV 62453
62452 VKETLRLHPPVPLLLPRLSMAQCNANGYTIPANTRVIINVWALGRDAKCWENSEEFMPER 62273
62272 FMDSGDTIDNVDFKGTDFQFLPFGAGRRICPGMNFGMASVELMLSNLMYCFDWELPVGMD 62093
62092 KDDVDMTDQFALTMARKEKLYLIPRSHVIKIT* 61994

>AP003909.1g $P chromosome 8 clone OJ1300_E01 lone pseudogene fragment
61469 EQESDFVDILLDHQQEYNLTRHNIHAILM 61383

>AP004757.1 $F 52% to AF321858 Lolium rigidum 70% to AP003909
chromosome 6 clone P0652D10
      MAQMLAAFLLDGLISHEHGHESLGAPPQAGTMAWYSLVLMTS
79980 LLFPLLVLLVMRCYVTRSGAKLLDKLPSVPGRLPVIGHLHLIGSLPHISLRDLATKH 79810
79809 SPDMMLLHLGAVPTLVVSSSRVAQSILHTHDDIFASRPYSPIANILFYGATDVGFSPYNE 79630
79629 YWRQIKKITTTHLLTMKKVRSYVSARQREVRIVMARITEAASKHVVVDLTEMLSCYSNN 79453
79452 IVCHAVCGKFSLKEGWNQLLRELVKVNTSLLGGFNIEDYFPSFTRLAAVRRLLLSCAKA 79276
79275 HNINKRWDQLLEKLIDDHTTKHIRSSSMLNHYDEEAGFIDVLLSIQHEYGLTK 79117
79116 DNIKANLAAMLMAGMDTSFIELEYAMAELMQKPHVMGKLQAEVRRVMPKGQDIVTEEQLG 78937
78936 CMPYLKAVIKETLRLHPPAPLLMPHLSISDCNINGYTIPSGTRVIVNVWALARDSN 78769
78768 YWENADEFIPERFIVNTLGDYNGNNFHFLPFGSGRRICPGINFAIATIEIMLANLV 78601
78600 YRFDWELPADQAAKGGIDMTETFGVAVHRKEKLLLIPHLHLR* 78472

>AP004757.1 $P chr 6 Pseudogene fragment last exon similar to AP003909
103765 FAIATIEIMLANLVYRFDWEILVDQAAKGGIDMTEAFGLAVHRKEKLLLVSWLPQD* 103595

>AP005285.1 gene 1 $F  43% to 81D2 (one frameshift)
MVDAMSGGVLVALMVLLLVAAPALLSQLERRRRSPSGPVALPVV (1?)
GPRGSPQNREPHPAPLP
98846 AQRPGAPVICRRFGSPPLAVVSSAPAAEECLGPHDLAFADKPRLPSGEILSYEWSTMGTA 98667
98666 RYGPYWRHIRRITVTELLSAHRVQHFAGVNAREVRAMARRLYRRAAAAAAS 98514 (fs)
98512 RVELKSRLFELFMNIMMAMICDRTFYGDGDDEVSEEARWFRSVVKETMELSGASTAWDF 
      LPAAARWLFARRLTRRMRELSDSRTRFYQRLITDHRTKEKTDDDNAAAGDHSPAPRRRTM 
      IGVLLSLQSKDPDACPDQLIRALCI (0) 98081 
97990 GSLQAGTETSAAVVEWAMSLLLNNPGAMARARGEIDACVGQPAARLLEAADLPKLHYLRCVVMETL 97793
97792 RLYPPVPLLAHESSADCDVAGFHVRKGTMLLVNTFAIHRDPQVWDEPESFFPDR (2) 97631
94075 FADGQNEAKMVIPFGMGRRGCPGENLAMQMVGLTLGTLIQCFDWERVGEELEDMGESSG 93899
93898 ITMPKKLPLEAFYQPRACMVHLLSS* 93821

>aaaa01048292.1 (indica cultivar-group) ortholog to AP005285.1 gene 1
clone is only 1060 bp long missing N and C-terminals
1   AFADKPRLPSGEILSYEWSTMGTASYGPYWRHIRRITVTELLSAHRVQHFAGVNAREVRA 180
181 MARRLYRRAAAAAASAGGRARVELKSRLFELFMNIMMAMICDRIFYGDGDDEVSEEARWF 360
361 RSVVKETMELSGASTAWDFLPAAARWLFARRLTRRMRELSDSRTRFYQRLITDHRTKEKT 540
541 DDDNSAAGDHSPAPRRRTMIGVLLS
617 LQSKDPDACPDQLIRALCI (0)
    GSLQAGTETSA 796
797 AVVEWAMSLLLNNPGAMARARGEIDACVGQPAARLLEAADLPKLHYLRCVVMETLRLYPP 976
977 VPLLAHESSADCDVAGFHVRKGTMLLVN 1060

>AP005285.1 gene 2 (partial)   sequence gap with C-helix (about 47 amino acids) 81D like
108306 MAVDAMFGSVAVALLAVVVAAAALRRWRRRRRRGGGRPLPGPVALPVVGHLHLFRRPLHRT 108124
108123 LARLAARHGAAVMGLRFGSRRVAVVSSAPAAEECLGPHDLAFANR (?) 107989
sequence gap with C-helix (about 47 amino acids) lower case sequence shown 
from ortholog aaaa01004834.1a

prlpsgeilayewstmgtasygpywrhirriavtellsahrvqhfad 

107525 VNVREVRALARRLYRRAAAAAAAGARTRVELKSRLFELLMNTMMSMICERTFYGA (2) 107361
       DDDEVSEEARWFRSVVKETMELSGASTVWDFLPAPARWL 107169
107168 DAGRMTRRMRELSDSRTRFLQRLIDDQRKDMDADSDDHAPAKRRTMIGVLLSLQRKD 106998
106997 PDSCPDQLIRSLCI (0) 106956
106869 GSLQAGTDTSAATVEWAMSLLLNNPGAMARARGEIDACVGQPAARLLEAADLPKLHYLRCV 106687
106686 VMETLRLYPPVPLLAPHESSADCVVAGFHVPQGTMLLVNTFAIHRDPQVWDEPEAFIPDR (2) 106507
106178 FADGKNEGKMVIPFGMGRRRCPGENLGMQMVGLALGTLIQCFDWERVGEELVDMRECSG 106002
106001 LTMPKELPLEALYQPRASMVDLLTKI* 105922

>aaaa01004834.1a (indica cultivar-group) ortholog of AP005285.1 gene 2
8825 MAVDAMFGSVAVALLAVVVAAAALR 8751
     Missing 48 amino acids shown from ortholog
rwrrrrrrgggrplpgpvalpvvghlhlfrrplhrtlarlaarhgaav
7227 MGLRFGSRRVAVVSSAPAAEECLGPHDLAFANRPRLPSGEILAYEWSTMGTASYGPYWRH 7048
7047 IRRIAVTELLSAHRVQHFADVNVREVRALARRLYRRAAAAAAAGARTRVELKSRLF 6880
6879 ELLMNTMMSMICERTFYGA (2)
     DDDEVSEEARWFRSVV 6700
6699 KETMELSGASTVWDFLPAPARWLDAGRMTRRMRELSDSRTRFLQRLIDDQRKDMDADSDE 6520
6519 HAPAKRRTMIGVLLSLQSKDPDSCPDQLIRSLCI (0) 6418
6331 GSLQAGTDTSAATVEWAMSLLLNNPGAMARARGEIDACVGQPAARLLEAADLPKLHYLRC 6152
6151 VVMETLRLYPPVPLLAPHESSADCVVAGFHVPQGTMLLVNTFAIHRDPQVWDEPEAFIPDR (2) 5969
5398 FADGKNEGKMVIPFGMGRRRCPGENLGMQMVGLALGTLIQCFDWERVGEELVDMRECS 5225
5224 GLTMPKELPLEALYQPRASMVDLLTKI* 5141

>BI806420.1 (partial) clone S063A11. 57% to AL606630.1 54% to 81D2 many frameshifts ortholog of aaaa01004834.1c = AP005285.1 at 115000 region 

IMEPLRLYPRPPLLVPSESSSXXTVXXXXXVPRGTLLLVNTCDIHRDPHIWDEPTSFIPERFEDGRSEGKMAI
PFGMGVRKCPAENLGMQMVALALGTMIQCFEWERVGEELVDMTEGSALTMPKKVPLEAFYQPRASVMHLLS*
This is between gene 3 and gene 4 on AP005285.1 (missed earlier)
There is no N-terminal (gene 4 might be the N-term but it is opposite orientation and 27000 bp away. It might have been split by a rearrangement)
The seq below is 100% identical to aaaa01004834.1c ortholog
Even the pseudogenes are highly conserved
1      SLEAGTGTSTDTIEWAMSLLLNNPDVMRKARDEIDAFIGQPVRLLEADDLPKLQYLRCII 60
       SLEAGTGTSTDTIEWAMSLLLNNPDVMRKARDEIDAFIGQPVRLLEADDLPKLQYLRCII
115879 SLEAGTGTSTDTIEWAMSLLLNNPDVMRKARDEIDAFIGQPVRLLEADDLPKLQYLRCII 115700

61     MEPLRLYPRPPLLVPSESSSXXTVXXXXXVPRGTLLLVNTCDIHRDPHIWDEPTSFIPER 120
       ME LRLYP  PLLVP ESSS  TV     +PRGT+LLVNT DIHRDPHIWDEPTSFIPER
115699 METLRLYPPAPLLVPHESSSDCTV-AGFHIPRGTMLLVNTFDIHRDPHIWDEPTSFIPER 115523

121    FEDGRSEGKMAIPFGMGVRKCPAENLGMQMVALALGTMIQCFEWERVGEELVDMTEGSA 179
       FEDGRSEGKMAIPFGMG RKCPAENLGMQMV L LGTMIQCFEWERVGEELVDMTEGS 
115436 FEDGRSEGKMAIPFGMGRRKCPAENLGMQMVGLGLGTMIQCFEWERVGEELVDMTEGSG 115254

180    LTMPKKVPLEAFYQPRASVMHLLS 203
       LTMPKKVPLEAFYQPRASVMHLLS
115253 LTMPKKVPLEAFYQPRASVMHLLS 115182


>aaaa01004834.1c (indica cultivar-group) ortholog of BI806420.1
16396 SLEAGTGTSTDTIEWAMSLLLNNPDVMRKARDEIDAFIGQPVRLLEADDLPKLQYLRCI 16220
16219 IMETLRLYPPAPLLVPHESSSDCTVAGFHIPRGTMLLVNTFDIHRDPHIWDEPTSFIPER (2?) 16040
15947 FEDGRSEGKMAIPFGMGRRKCPAENLGMQMVGLGLGTMIQCFEWERVGEELVDMTEGSG 15771
15770 LTMPKKVPLEAFYQPRASVMHLLS* 15696

>AP005285.1 $F gene 3 one frameshift 43% to 81H1 very similar to BI806420.1 15 diffs
114128 MDALLIALFLLLLIALMETARVRRSGTQRRAGNVPPPPPEPAG
       LPLVGHLHLFRKPLHRTLARLAARHGGAVFGLRLGSRRVA 
       VVSSAPAAEECLGAHDVAFADRPRLPSGRILSYDWSTMGTASYGPYWRHVRRVAVTEILS
       ARRVQHFADVHVREARAMARHLHRAAVRHGVGGAARVRVELKSRLFELLMNTMMAMICDKTYYGD (2) 113505
113412 DDDGKVSKEARWFREMVEETMALSGASTVWDFLPAALRWVDVGGVGRRLWRLRESRTRF
       LQGLINDERKEMEQEQGGDRAQPAARRRTMIGVLLSVQRQDPDACPDQLIRSLC 113074
111518 AGTDTSADTIEWAMSLLLNNPNVMRKARDEIDAFIGQP (fs) 111405
111405 SRLLEASDLTKLQYLQCIIMETLRLYPPAPLLVPHEASTDCSIAGFHITRGTMLLVNTFA
       IHRDPQVWNEPTSFIPER (2)
       FENGRSEGKMAIPFGMGRCKCPAENLGMQMVGLALGTMIQCFEWERVGEELVDMTEGSG
       LTMPKEVPLQAFYQPRASLMHLLY* 110842

>aaaa01004834.1b $FI (indica cultivar-group) ortholog of AP005285.1 gene 3
14689 MDALLIALFLLLLIALMETARVRRSGTQRRAGNVPPPPPEPAGLPLVGHLHLFRKPLHRT 14510
14509 LARLAARHGGAVFGLRLGSRRVAVVSSAPAAEECLGAHDVAFADRPRLPSGRILSYDWST 14330
14329 MGTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMARHLHRAAVRHGVGGAARV 14150
14149 RVELKSRLFELLMNTMMAMICDKTYYGD (2) 14066
13973 DDDGEVSKEARWFREMVEETMALSGASTVWNFLPAALRWVDVGGVGRRLWRLRESRTRFL 13794
13793 QGLINDERKEMEQEQGGDRAQPAARRRTMIGVLLSVQRQDPDACPDQLIRSLCI (0) 13632
12083 SSLEAGTDTSADTIEWAMSLLLNNPNVMRKARDEIDAFIGQPVRLLEASDLTKLQYLQCII 11901
11900 METLRLYPPAPLLVPHEASTDCSIAGFHITRGTMLLVNTFAIHRDPQVWNEPTSFIPER (2) 11721
      FENGRSEGKMAIPFGMGRRKCPAENLGMQMVGLAL 11541
11540 GTMIQCFEWERVGEELVDMTEGSGLTMPKEVPLQAFYQPRASLMHLLY 11397

>AP005285.1 gene 4 (partial)   one frameshift, runs off end of clone missing last two exons
38% to 81H1 same as gene a on AP004022.1
AP004022.1a comp(2300-3335) chromosome 2 clone OJ1126_B06, 52% to 705A21
1-321 runs off beginning of contig about 1639 cannot extend 10/11/01
142199 MDTSTLLIALTLVLLLLLLTARRRRSGRLRLRLPPEPPGLPLVGHLHLFRKPLHRTLAR 142375
142376 LAARHGAVFRLRLGSRRVAVVVSSAPAAEECLGAHDVAFAGRPRLPSAGILSYGWSTMG 142552
142553 TAAYGPYWRHVRRVAVAEILSAHRVRQFAGAHAREARATARRLCRAASRQRHGAGAAAGR 142732
142733 VRVELKSRLFELLMNTMMAMICDKTYYGA (2) 142816
142893 DDDGEVSEEARWFREMVEETMALSGASTVWDFLPAALRWVDVGGVGRRLWRLRESR 143060
143061 TRFLQGLIDDQRKEMEHDGDGRELPAAAARPRSMIGVLLSVQR 143189 (fs)
143191 QDPEECPDQLISSLCI (0) 143238 end of clone

>aaaa01003554.1 (indica cultivar-group) ortholog to AP005285.1 gene 4
3364 MDTSTLLIALTLVLLLLLLLLLTARRRRSGRPRLRLPPEPAGLPLVGHLHLFRKPLHRTL 3543
3544 ARLAARHGAVFRLRLGSRRVAVVVSSAPAAEECLGAHDVAFAGRPRLPSAGILSYGWSTM 3723
3724 GTAAYGPYWRHVRRVAVAEILSAHRVRQFAGAHDREARATARRLCRAASRQRHHGAGAAA 3903
3904 GRVRVELKSRLFELLMNTMMAMICDKTYYGA (2) 3996
4070 DDDGEVSEEARWFREMVEETMALSGASTVWDFLPAVLRWVDVGGVGRRLWRLRESRTRF 4246
4247 LQGLIDDQRKEMEHDGDGRELPAAAARPRSMIGVLLSVQRQ 4369 100 ns in seq
missing C-terminal 

>AP004022.1b $F chromosome 2 clone OJ1126_B06, 54% to CYP92A5
C71836        58% TO 706A1  9/97 344-394 I-K helix REGION opposite end =
C98588 70% identical to AQ327338 54% to 71B4 C-term 53% to 92A2
64% to D24290 61% to AP003870.1 52% to aaaa01010885.1
59881 MEVQELVPSPWSSSSSFLVLVLATLLFVAAFLRRRQGARRKYNIPPGPRPWPVIGNLNLIGALPYRSIRDL 59669
59668 SRRYGPLMSLRFGSFPVVVGSSVDMARYFLRANDLAFLDRPRTAAGRYTVYNYAGVLWSH 59489
59488 YGEYWRQARRLWVTELLSARRLASTEHVRAEEVRAMLRGLSRRAGAGTAVVLKEHMLMVT 59309
59308 LNVISRMVFGKKYIVEEGEGSSPTTAEEFR 59219 (2)
59007 WMIEEIFFLNGVFNIGDMVPWLGWLDPQGYIGRMKRLGGMFDRFLEHILDEHVERRRR 58834
58833 EGDGFAARDMVDLLLQFADDPSLKVPIQRDGVKAFIL 58729 (0)
57247 ELITGSTDTTSVSVEWAMSEVLRNPSVLARATDELDRVVGRRRLVAEGDIPNLPYLDA 57074
57073 VVKESMRLHPVVPLLVPRVSREDAFSVSVAGAAASYDIPAGTRVLVNVWAIGRDPAVWGD 56894
56893 DAEEFRPERFAAGGERGGVDVKGQDFELLPFGSGRRMCPGFGLGLKMVQLTLANLLHGFA 56714
56713 WRLPGGAAAEELSMEEKFGISVSRLVQLKAIPEPKLPAHLYDE* 56582

>AQ573853 nbxb0085A03r (partial)   50% to 71A24 AQ691042 nbxb0086M20r
AQ795917.1 nbxb0058F03f CUGI Rice BAC genomic clone Length = 684
No indica ortholog found
MAARTWLWLLLSPLILLLLHYALALLTARRARKNPLPPSPPALPFIGHLHLIGALPHVSLCCLAT 
KHAPDLMFLRLGTSLPVLVASSPCAAEAILRTHDDVFASRPRTVLADIIFYGSRDIGFAPYGEDWRQAR

>AC113337.1 $F (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0061H20, 
from chromosome 10
AC074355.2 Oryza sativa clone OSJNBa0071I20, gene 1 43% to 71A13
AQ288798 65-164 region C-helix 54% to 71A12 same as AC074355.2
AQ840770.1 nbxb0071I20f CUGI Rice BAC genomic cloneLength = 754
AQ840078.1 nbxb0051B18f CUGI Rice genomic cloneLength = 694
similar to lotus 71D
AQ865944.1 nbeb0026D10f BAC genomic Length = 473 59% to 99A1 69% to AP004000.1
23542 MANLIYYSLLIILPFLLLINFYKAMFSSRKQAGRLPPCPWQLPIMGSIHHLIGDLPHRSL 23721
23722 HDLSRRYGPVMLLKFGQVPFIIVSSPEAAKDIMKTHDSIFAMRPQSEIMKIITKRGQGLV 23901
23902 FAPYDDQWRQLRKICIRELLCAKRVQSFCAIREEEAARLVKSISSDQAHLVNLSKKLADY 24081
24082 ATDAAIRIITGTRFENQEVRDKFQYYQDEGVHLAASFCTANLCPSLQLGNTLSRTARKAE 24261
24262 IYREGMFAFIGGIIDEHQERRAQDMYHKEDLIDVLLRIQQEGSLESPVSMETIKFLIF (0)
      DILAGGSETVTTVLQWAMTELMRNPTVMSKAQ 24621
24622 DEVREVFKWKKMVSNDDINKLTYLQFVIKETVRLHTPGPLFMRECQEQCQVMGYDVPKGT 24801
24802 KFLLNLWSISRDPKYWDDPETFKPERFENDARDFKGNDFEFIPFGAGRRMCPGMLFGLAN 24981
24982 IELALANLLFYFDWSLPDGVLPSELDMTENFGVTVRKKEDLLLHASLYAQLSC* 25143

>aaaa01010273.1 $FI (indica cultivar-group) ortholog of AC113337.1
6315 MANLIYYSLLIILPFLFLIKFYKAMFSSRKQARRLPPCPWQLPIMGSIHHLIGDLPHRAL 6494
6495 RDLSRRYGPVMLLKFGQVPFIIVSSPEAAKDIMKTHDSIFATRPQSEIMKIITKRGQGLV 6674
6675 FAPYDDQWRQLRKICIRELLCAKRVQSFCAIREEEAARLVKSISSDQAHLVNLSKKLADY 6854
6855 ATDAAIRIITGTRFENQE VRDKFQYYQDEGVHLAASFCPANLCPSLQLGNTLSRTAHKA 7031
7032 EIYREGMFAFIGGIIDEHQERRAQDMSHKEDLIDVLLRIQQEGSLESPVSMETIKFLIF (0) 7208
7297 DILAGGSETVTTVLQWAMAELMRNPTVMSKVQDEVREVFKWKEMVSNDDINKLTYLQFVI 7476
7477 KETLRLHTPGPLFMRECQEQCQVMGYDMPKGTKFLLNLWSISRDPKYWDDPETFKPERF 7653
7654 EDDARDFKGNDF EFISFGAGRRMCPGMLFGLANIELALANLLFYFDWSLPDGVLPSELDM 7833
7834 TENFGVTVRKKEDLLLHASLYAQLSC* 7914

>AC078894.1 $P chromosome 10 clone OSJNBa0096G08 12 unordered pieces starts 123
probable pseudogene fragment 47% to 71B1
51119 LRRICVLELFSAHRV*SLHHVREEEAAPLVRVVADIRSPLGP 50994

>AP004233.1 $F chromosome 1 clone OSJNBa0065J17 50% to CYP71C4
= AQ857130 duplicate of the AP004232 gene at 27203-29726 
21862 MEQAAGLVYQLFQHEMFPWTFSVLALFPFLLLVLHYLATNHRTPTTCKETKNHHPP 
21694 PPSPPRLPIIGHLHLIGGLLHVSLRELAHRYGPDLMLLHLGQVPNLIVSSPRAAEAVLR 21518
21517 THDLVFASRPYSLIADILLYGPSDVGLSPYGE*WRRRIITTHLLTNKKVRSYRVAREE 21344
21343 E 21335 (0)
      VHKVMAKVHELSTKGMAVDMTELFSTFSNDLICRLVSGKNFQGEGRNKLFRQLFKAN
      SVLLAGFNLKDYYPGLARLKAVSMVMCAKARNTRKLWDELLDEIIDERMS
      KQQCEHDEGNDQDEMNFVNVLLLQEQGITREHLKAILV (0)
20004 DMYQAGTETSSVVLVFAMAELMQKPHLMAKLQAELRTTIPKQGHELITERDLTDMTYLKA 19825
19824 VIKETLRLHPPTPLLLPHLAMADCNIDGYTVRSGTRVIVNAWAIGRNSESWEAAEEFLPE 19645
19644 RFVDDGSAANVDFIGTDFQFLPFGAGRRICPGINFASASMEIILANLLYHFDWDVSAEAA 19465
19464 IDKDGIDMAEAFGLSVQLKEKLLLVPVDYKDGMQDSAVILL* 19339

>AP004232.1 $F chromosome 1 clone OSJNBa0051H17 like CYP71C4
56483 MEQAAGLVYQLFQNEMFPWILALFPFLLLALHYLATNHRTPTTCKETRNHLSPPSP 56650
56651 PRLPIIGHLHLIGDLPHVSLRELAHRYGPNLMLLHLGQVQNLVVSSPHAAEAVLR 56815
56816 THDHVFASRPHSLIGDILLYGPSDVGLSPYGEQWRRSRRIVTTHLLTNKKVRSYHVAREE 56995
56996 E 56998 (0)
57929 VHKVMTKVHELSTKGMGVDMFELFSTYSNDLICRLVSGKNFQGDKGRNKMFRQLFKANY 58105
58106 VLLAGFNLEDYYPGLARLKAVSWVMCAKARNTRKLWDELLDEIINDRMSKQPCEHDRGND 58285
58286 DQDEMDFVDVLLLQERGITRDHLKAIL 58366 (0)
58462 DMFQAGTETTSVVLVFAMAELMQKPHLMAKLQAELRTNIPK*GRELITECDQTNMTYLKA 58641
58642 VIKETLRLHPPSPLLVPHLAMADCDIDGYTVRSGTRVIVNAWAIGRNSESWEAAEEFLPE 58821
58822 RFVDGGSAANVDFIGTDFQFLPFGAX 58896 frameshift
58899 RRICPGINFASASMEIILANLLYHFDWDVSAEAAIDKDGIDMAEAFGLSVQLKEKLLLVP 59078
59079 VEYKGSVQDSAVIL* 59123

>AC109595.1 $F chr 5 39% to 71As 40% to 71Bs new 71 subfam? 44% to 71Cs
clone OJ1212B02, Length = 126962
72095 MEIELSPVLLLLPFLLLGFLYLTGGVLRSGGNARRRLAPAPRGLPVIGNLHQVGALP 71925
71924 HRALRALAAATGAPHLLRLRLGHVTALVASSPAAAAAVMREHDHVFATRPYFRTAEILTY 71745
71744 GFKDLVFAPYGEHWRHARRLCSEHVLSAARSHRYGPMREQEVALLVNAIRTEAAAAAV 71571
71570 DVSKALYAFTNAVICRAVSGRLSREDEGRSELFRELIEENATLLGGFCVGDYFPALAWA 71394
71393 DAFLSGFAARACRNLRRWDELLEEVIAEHEARLRGGDDGGGEEHREEDFVDVLLALQE 71220
71219 ESQRHDGSFKLTRDIIKSLLQDMFAAGTDTSFITLEWAMSELVKNPAAMRKLQDEVRRGG 71040
71039 GATTAATPYLKAVVKETLRLHPPVPLLVPRECARDTDDDATVLGYHVAGGTRV 70881
70880 FVNAWAIHRDAGAWSSPEEFRPERFLPGGGEAEAMDLRGGHFQLVPFGAGRRVCPGMQFA 70701
70700 LATVELALASLVRLFDWEIPPPGELDMSDDPGFTVRRRIPLRLVAKPVGSEDDK* 70536

>AP004326.2a $P genomic DNA, chromosome 1, BAC clone:OJ1294_F06, complete sequence
Length = 102983
4 genes 71B like
Gene 1 pseudogene 71 family
67989 LPPVPWPLPVIGSMH*LLGSLPHH 68060 frameshift with deletion
68060 RPACAVELLSPRRARSFRRVREAEPARLVRAVAASPAWPLVNVVGGEHVAAMMTAV 68227
68228 GARP 68239 frameshift with small deletion
68238 RCPRQEEYLEELGKVAKLAAGFNLVDLFPESRLVRAAQAAHGKIHSIMDAMVQ 68396
68397 DHLKAMEERREEVADGVVDDGDGDGADRDEELLSILLRFQRDGGLGITLTNGNHQRDS 68570 (0)
68886 GILAGGSDTTTTTVMWAMSELLRCPRAMQ 68972 frameshift with deletion
69023 YMQLVIKETLRLHLPFPLLFPRLCTETCKIMGFDVPKGTIVIVNNWAISRDERCWEDAED 69202
69203 F*PERFEHDDTDYNGTYFQFLSGGFGRRMFPDFIFAQFNIEIALANLLYHFDWELPCSEN 69382
69383 RMELDMTESAGLTASRLTDLFG* 69451

>AP004326.2b $F genomic DNA, chromosome 1, BAC clone:OJ1294_F06, complete sequence
Gene 2 no good matches in NR 79% to AP004326.2c 
71860 MAGIVDTAAFCT
71896 LLCLLLTLVVFKLKTATSSRHNAGVNLPPGPWALPVIGSIHCLLGSLPHHAMRELSRR 72069
72070 YGPVMLLRLGHVRTLVLSSPEAAREVMKTHDAAFATRAVTPTASILTYGARDIVFAPF 72243
72244 SKHLRELRKLCTLELLSPRRVRSFRHVRDEEAARLARSVAAAAPAVVNVSELVKI 72408
72409 MANNIIMTAIIGDTCPQRDEYLEALDKTMDLMNGFNLIDLFPGSRLARVLGARSLRATKR 72588
72589 VHQKLHQITDTIIQGHEIIKDGSVGDDTIQETVGTHNMHGHGHKCEDILDVLL 72747
72748 RFHRDGGLGITLTKEIVSAVLF 72813 (0)
73327 DLFAAGSETTSTTIIWAMSELVRTPHVMERAQSEIRQVLQGKTVVSEADIEGRLHYL 73497
73498 QLVIRETLRLHPPVPFLIPRLCSEANSKIMRYNIPQGAMVLVNISAIGRDEKIWKNANEF 73677
73678 RPERFKDDMVDFSGTDFRFIPGGAGRRMCPGLTFGLSNIEIALASLLYHFDWKLPNDASS 73857
73858 CKLDMRETHGVTARRRTELLLKATPLYT* 73944

>AP004326.2c $F genomic DNA, chromosome 1, BAC clone:OJ1294_F06, complete sequence
Gene 3 39% to 71B11
77487 MAGIMDSTTASYYTTLLCG
77544 ALLLAAVVFKLKTAAAFSRHNAGVNLPPGPWALPVIGSIHCLLGSLPHHAMRELSRRY 77717
77718 GPVMLLRLGHVRTLVLSSPEAAREVMKTHDVAFANRAVTPTASIDIVFAPFG 77873
77874 KHLRELRKLCALELLSPRRVRSFRHVREEEAARLARSVAAAASASSAVNVSELVKIM 78044
78045 TNDVTMRAIIGDRCPQREEYLEALDKTMDLLAGFNLVDLFPGSPLARVLGGRSLRTTKRV 78224
78225 HEKLHQITEAIIQGHGIKDTVGDEHHECEDILDVLLRFQRDGGLGITLTKEIVSA 78389
78390 VLF 78398 (0)
78554 DLFAGGSETTSTTILWAMSELMRSPHVMEQAKYEIRQVLQGKAMVSEADIEGRLHYLQLV 78733
78734 IKETLRLHPPVPIVIPRLCSKPNSKIMGYDIPQGTSVLVNVSAIGRDEKIWKDVNEFRPE 78913
78914 RFKDDIVDFSGTDFRFIPGGSGRRMRPGLTFGVSNIEIALVTLLYHFDWKLPSETDTHEL 79093
79094 DMRETYGLTTRRRSDLLLKATPSYARLGWSTNMQIYSVKCLVYE* 79228

>AP004326.2d $P genomic DNA, chromosome 1, BAC clone:OJ1294_F06, complete sequence
Gene 4 pseudogene
81031 DFFFCGLETTTTATIWAI*EFIKNPHAVEKAQSDIRKILGGKSIVEEADIEGQLHYFQMVN 81213 frameshift
81213 QETLRLHPPVPLLLPRLWSEPCKIMGYDIP 81302 frameshift
81304  KNTAIFVNTWALGR 81345 frameshift 
81344 KIKNTGLMQVSSGLKY
81393 SRMGIVDFNGLDFRFLPCGAGRRICLGLMFELSDIELTLASLLYHSSWRLPTRSYSNK 81566
81567 LDMTEANGITTHRRIDIWLEATPFVPR 81647

>AP004175.1 $P chromosome 2 clone OJ1006_B12 pseudogene fragment 
94% to AC078894 51119-50994
64520 LRRICMLELFSAHRV*SLHHVREEEAARLVRVVA 64419

>AC120537.1c $F chromosome 3 clone OSJNBb0042N11
AQ573952 nbxb0083G09r 60% to AQ259669 52% to 99A1 51% to 71B23
BM039053 clone V013G04.Length = 527
103769 MEMTLPLLGAAVVLAAFLLFFLVKNNRCCWSPAAERR
103880 LRLPPGPWRLPLVGSLHHVLLSRHGDLPHRALRELAGRYGALMLLRFGAVPTLVVSSAE 104056
104057 AAREVLKTHDACFASRHMTPTLAVFTRGGRDILF SPYGDLWRQLRRICVLELFSARRVQS 104236
104237 LRHVREDEAARLVRAVAEECAIGGGGGAVVPIGDMMSRMVNDSVVRSAIGGRCARRDEFL 104416
104417 RELEVSVRLTGGFNLADLYPSSSLARWLSGALRETEQCNRRVRAIMDDIIRERAAGKDDG 104596
104597 DGEDDLLGVLLRLQKNGGVQCPLTTDMIATVIM (0) 104695
105190 EIFSAGSETASTTLEWAISELVRNPKVMDKAQSEVRKLFEGQDNLTEDDMSRLS 105351
105352 YLHLVIRETLRLHAPAPFLLPRECREQCNVMGYDITEGTRVLVNAWAIARDTRYWEDPEI 105531
105532 FKPERFNANLVDFKGNDFEYIPFGSGRRVCPGITLGLTSMELVLASLLYHFDWELPGGKR 105711
105712 CEEIDMSEAFGITVRRKSKLVLHATPRVPCLH* 105810

>aaaa01021177.1 $FI (indica cultivar-group) ortholog to AC120537.1c
AAAA01039974.1 (indica cultivar-group) N-term 132 aa
396 MEMTLPLLGAAVVLAAFLLFFLVKNNRCCWSPAAERRLRLPPGPWRLPLVGSLHHVLLSR 217
216 HGDLPHRALRELAGRYGALMLLRFGAVPTLVVSSAEAAREVLKTHDACFASRHMTPTLAV 37
36  FTRGGRDILF 7
3930 SPYGDLWRQLRRICVLELFSARRVQSLRHVREDEAARLVRAVAEECAIGGGGGAVVPIGD 3751
3750 MMSRMVNDSVVRSAIGGRCARRDEFLRELEVSVRLTGGFNLADLYPSSSLARWLSGALRE 3571
3570 TEQCNRRVRAIMDDIIRERAAGKDDGDGEDDLLGVLLRLQKNGGVQCPLTTDM 3412
3411 IATVIM (0) 3394
2892 EIFSAGSETASTTLEWAISELVRNPKVMDKAQSEVRKLFEGQDNLTEDDMSRLSYLHLVI 2713
2712 RETLRLHAPAPFLLPRECREQCNVMGYDITEGTRVLVNAWAIARDTRYWEDPEIFKPERF 2533
2532 NANLVDFKGNYFEYIPFGSGRRVCPGITLGLTSMELVLASLLYYFDWELPGGKRCEEIDM 2353
2352 SEAFGITVRRKSKLVLHATPRVPCLH* 2272

>AC120537.1b $F chromosome 3 clone 
AQ869247.1 nbeb0034D08r CUGI Rice BAC genomic Length = 447 53% to 99A1
AZ130570.1 OSJNBb0104D19r CUGI Rice BAC genomic Length = 327
80150 MEVSLPLLIGVVLAFLLLFVLVNIKNSCRSWWPPPEKEKKKLRLPPGPWQLPLVGSLHHV 80329
80330 LLSRHADLPHRALRELAGKYGPLMMLRFGAVPTLVVSSAEAAREVLKTYDAAFASRYL 80503
80504 TPTLAVLSRGGRDILFSPYCDLWRQLRRICVHELLSARRVQSLRHGREDEAARLVRSVAA 80683
80684 ECAARGGAAVVNVGELISRAVNDSVVRSAVGARSARRDEFVRELDESVRLSGGFNLADLY 80863
80864 PSSWLARRLSGAMRETERCNRSLMAIMDDIIREHGDGEEDLLGVLLRLQRNGDVQCPLTT 81043
81044 DLITNVVL (0) 81067
81865 DMFAAGSETSSTTLEWALTELVRNPHIMEKAQSEVREIFRGENKLTEEMMDKLSYLRLVI 82044
82045 RETLRLHLPVPFLLPRQCREPCSVMGYDIPVGTKVLVNAWAIARDNQYWDDPEVFKPERF 82224
82225 ENNRVDFKGIDFEFIPFGAGRRICPGIALGLANIELMLASLLYHFDWEFLDRDRNDEIDL 82404
82405 SETFGITAKRKSKLMVYATQRIPCLG 82482

>aaaa01013880.1 $FI (indica cultivar-group) ortholog of AC120537.1b AQ869247.1
 801 MEVSLPLLIGVVLAFLLLFVLVNVKNSCRSWWPPPEKEKKKLRLPPGPWRLPLVGSLHHVLLS (fs) 989
 991 RHADLPHRALRELAGKYGPLMMLRFGAVPTLVVSSAEAAREVLKTYDAAFASRYLTPTLA 1170
1171 VLSRGGRDILFSPYCDLWRQLRRICVHELLSARRVQSLRHVREDEAARLVRSVAAECAG 1347
1348 RGGAAVVSVGELISRAVNDSVVRSAVGARSARRDEFVRELDESVRLSGGFNLADLYPSSW 1527
1528 LARRLSCAMRETERCNRSLMAIMDDIIREHGDGEEDLLGVLLRLQRNGDVQCPL 1689
1690 TTDLITNVVL (0)
2513 DMFAAGSETSSTTLEWALTELVRNPHIMEKAQSEVREIFRGENKLTEEVMDKL 2671
2672 SYLRLVIRETLRLHLPVPFLLPRQCREPCSVMGYDIPVGTKVLVNAWAIARDNQYWDDPE 2851
2852 VFKPERFENNRVDFKGIDFEFIPFGAGRRICPGIALGLANIELMLASLLYHFDWEFLDRD 3031
3032 RNDEIDLSETFGITAKRKSKLMVYATQRIPCLG* 3133

>AC120537.1a chromosome 3 clone pseudogene fragment
2543 ARRVQSPRHVR*D*QAGYLVHAVVGECAPGGAGAVVPISEKISRMVNDSVVRPAIGSRCA 2364
2363 RRDEFLHVQARGLRQARGRVQLGRPVPIVVASELAQRRAAVGRPSVAAGAFARCGRPAET 2184
2183 FFNMDNLRTHDTYRKKNHSGNSQHCTAFSALSFSELQLKMTIWQSHHYKLPINLREIFS   
2006 SAGSETLNDTLVGNI*ANEKYPQVMQKAQTEVREKFRG*DKLIKDDMNRLSYLHL 1846
1845 VIQETLRLH 

>AL662933.1 $F OSJN00145 chromosome 4 clone OSJNBa0096F01, Length = 141695
63% to 99A1 sorghum 
86110 MEINSEATVTLVSVVTLPILLALLTRKSSSKKRRPPGPWNLPLVGGLLHLLRSQPQVALRDLAGKYGP 85907
85906 VMFLRTGQVDTVVISSPAAAQEVLRDKDVTFASRPSLLVSEIFCYGNLDIGFAPYGAYWR 85727
85726 MLRKLCTVELLSTKMVRQLAPIRDGETLALVRNIEAAAGGKKPFTLATLL 85577
85576 ISCTNTFTAKAAFGQACGGELQEQFLTALDEALKFSNGFCFGDLFPSLRFIDAMTGLRSR 85397
85396 LERLRLQLDTVFDKIVAQCESNPGDSLVNVLLRIKDQGELDFPFSSTHVK 85247
85246 AIIL (0?)
84901 DMFTGGTETTSSTTEWLMSELMRNPEVMAKVQAEVRGVFDNKSPQDHEGLLENLSYMKLV 84722
84721 IKETLRLNPVLPLLLPHLCRETCEIGGYEIVEGTRVLINSWAMARSPEYWDDAEKFIPER 84542
84541 FEDGTADFKGSRFEYLPFGTGRRRCPGDIFAMATLELIVARLLYYFDWSLPDG 84383
84382 MQPGDIDMELVVGATARRKNHLQLVASPYKPISMQS* 84272

>AL713947.1 $F chromosome 12 clone Monsanto-OJ1003_A04, 
AQ259099 41-60 N-term similar to 71B7 no ortholog found in indica
39% to 76C2
MASGLWFLGISLAVLLLCYVGTNRRGDGQRPPGPRTLPIVGNLLDLRGGNLHHKL 
ASLAHAHGPVMTLKLGLVTTVFISSRDAAWEAFAKHDRRLAARTVPDTRRALAHAERSM 
VWLPSYDPLWKTLRSIAA (fs) 45837
45835 THVFSPRSLGVARSARERKVHDMVDSFRRRAGQEVDIGQVLYHGMFDLLANVLLSVD
AHPNLRDLMEDIVAILAKPNASDFFPLLRPLDLQGIRHWTAIHMSRVLHILDSIIDC 
RLAQGTDDQCKDVLDSLLVLMSTGKLSRRDVKILLFDILAAGTETTKITVEWAMAELL 
RNPNVMATTRAEMKAALGGNGTITEADVVNLPYLQAAVKESMRLHPVAPLLLPHLVVEDG 
VRIGGYAVSKGTTVIFNSWAIMRDSTAWERPDDFLPDRFLGKTELDLWGKQAKFIP 
LGSGRRLCPALPMVELVVPFTVASLLHAFEWHLPKGMSAEEVDVTERYTSNDILVMATPLKAVPLIVT* 

>AL713951.1 $F chromosome 12 clone Monsanto- 39% to 83B1
AF088221 BI305808.1 49% to 76C6 mRNA
44616 MSLALLVLSAAYVLVALRRSRSSSSKPRRLPPSPPGWPVIGHLHLMSGMPHHALAELART 44437
44436 MRAPLFRMRLGSVPAVVISKPDLARAALTTNDAALASRPHLLSGQFLSFGCSDVTFAPAG 44257
44256 PYHRMARRVVVSELLSARRVATYGAVRVKELRRLLAHLTKNTSPAKPVDLSECFLNLAND 44077
44076 VLCRVAFGRRFPHGEGDKLGAVLAEAQDLFAGFTIGDFFPELEPVASTVTGLRRRLKKCL 43897
43896 ADLREACDVIVDEHISGNRQRIPGDRDEDFVDVLLRVQKSPDLEVPLTDDNLKALVL (0)
      DMFVAGTDTTFATLEWVMTELVRHPRILKKA 43537
43536 QEEVRRVVGDSGRVEESHLGELHYMRAIIKETFRLHPAVPLLVPRESVAPCTLGGYDIPA 43357
43356 RTRVFINTFAMGRDPEIWDNPLEYSPERFESAGGGGEIDLKDPDYKLLPFGGGRRGCPGY 43177
43176 TFALATVQVSLASLLYHFEWALPAGVRAEDVNLDETFGLATRKKEPLFVAVRKSDAYEFK 42997
42996 GEELSEV* 42973

>AP003544.1 $P chromosome 6 clone P0599C12 same as AP003686.1 8668-8037 pseudogene of AL713951.1
this gene matches a barley EST BF255745.2 75% and a sorghum EST BE354971.1 79% 
so there must be a functional copy of this gene in rice  
107880 GSMPAVVISKPNLARPALTTNDAVLASRQHLLNG*FLSF 107764 frameshift
107762 GCSDVTFAPAGPYHRM 107715 frameshift
107713 QMARGVEVSELLSAHHVAMYGVVRVKELQRLLAHLTKNTSSAKPIDLSECFLNLANDVLCRVAF 107521
107520 GRRFPRDEGDKLSAVLANAQDLL 107452 frameshift
107452 AGFTISDFFLELEPVASTVTGLCHRLKKCLADLCEACDVIVDVHISGNRQRIPSDREEDFVDVLLRVQ 107249

>aaaa01005413.1 $FI (indica cultivar-group) ortholog to AL713951.1
5862 MSLALLVLSAAYVLVALRRSRSSSLKPRRLPPSPPGWPVIGHLHLMSGMPHHALAELARTMRAPLFRMRL
     GSVPAVVISKPDLARAALTTNDAALASRPHLLSGQFLSFGCSDVTFAPAGPYHRMARR
     VVVSELLSARRVATYGAVRVKELRRLLAHLTKNTSPAKPVDLSECFLNLANDVLCRVAFG
     RRFPHGEGDKLGAVLAEAQDLFAGFTIGDFFPELEPVASTVTGLRRRLKKCLADLREACD
     VIVDEHISGNRQRIPGDRDEDFVDVLLRVQKSPDLEVPLTDDNLKALVL (0) 4972
4875 DMFVAGTDTTFATLEWVMTELVRHPRILKKAQEE
4773 VRRVVGDSGRVEESHLGELHYMRAIIKETFRLHPAVPLLVPRESVAPCTLGGYDIPARTR 4594
4593 VFINTFAMGRDPEIWDNPLEYSPERFESAGGGGEIDLKDPDYKLLPFGGGRRGCPGYTFA 4414
4413 LATVQVSLASLLYHFEWALPAGVRAEDVNLDETFGLATRKKEPLFVAVRKSDAYEFKGEE 4234
4233 LSEV* 4219

>AC105746.1 $F chromosome 10 clone OSJNBb0086I08, Length = 123484
55% to AC074105.1 chr 10 40% to 76C2
New rice seq 
1-115
      MSAFCWSATRSPSRQRLIENGFLFACKHHALTPARPLLPPLQ
31481 RIAAARRRLPPGPCPLPLIGNLLDIGXLPH
      RSFARLAERYGPLMTVRLGAATCVVASSPATARAV 31288
31287 LQTHNASLAGRGRQDAWHAGG
116-306
102155 HAENSVFVLPPGRKWRLLRKLGAAHLFSRRKLAELAPLRDEIVGGLLRRVAERADHRGG 101979
101978 APVNVGRLALAANVELLWRSVFSTRLDAATLDVLCDVAREAAVLLGTPNVSDFFPA 101811
101810 VAALDLQGLRRRLAELMKNTYRLVDAQIDHRMRCRELRGGRGGEAMDLLDVLLDMSE 101640
101639 QEREDGDDEVINR
307-504
101097 DLFVGGSDSTATTVEWAMAELLQNPEIMKTLQQEIKMVLGTRSQVEESDIGQL 100939
100938 PYLQAIVKETLRLHPIVPLRLYEAERTVEIEGHTIPKGSKVIVNAWAIHQSVKVWIQP 100765
100764 EKFLPKRFITKDIDFAGRHFEFIPFGSGRHICIGLPLANRMLHMILGSLMHQF 100606
100605 KWTMPQMVNRNGLDMAEKFGLAVSMATRPNIIA 100507

>AC078944.1 (partial)   clone OSJNBa0089D15,9 unordered pieces STARTS 347 51% to 71C4
this seq is not found in version 5 of this accession
no indica ortholog found
140438 PFQGLCS KGTFRLPAPVPRLLPGRACPSSDVAGYTLPSGARVLVYVWA WADSCVRGLVRE 140259
140258 NLCQCVFRVRSAFRGVRLELFHWGQVPVWPGIAPAA*LVH*GLGS 140124

>AQ256364.1 (partial)   nbxb0016O01r CUGI Rice BAC clone nbxb0016O01r.Length = 607 
84% to 73A5 82% to AP003446 probable CYP73A rice gene
ortholog to aaaa01002376.1 complete
AQ576280.1 nbxb0088L20r CUGI Rice BAC genomic clone
AQ289078.1 nbxb0034K09r CUGI Rice BAC genomic clone
(2) RRVMEQTGEIRCAMDHILEAERKGEINHDNVLYIVENINVA (1)

>aaaa01002376.1 $FI (indica cultivar-group) ortholog to AQ256364.1
73% to 73A5
899  MDALLVEKVLLGLFVAAVLALVVAKLTGKRLRLPPGPAGAPIVGNWLQVGDDLN 1060
1061 HRNLMALARRFGDILLLRMGVRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGKG 1240
1241 QDMVFTVYGDHWRKMRRIMTVPFFTNKVVAQNRAGWEEEARLVVEDVRRDPTAATSGVVI 1420
1421 RRRLQLMMYNDMFRIMFDRRFDSVDDPLFNKLKAFNAERSRLSQSFEYNYGDFIPVLRPF 1600
1601 LRRYLARCHQLKSQRMKLFEDHFVQERK 1684 (2)
3697 RVMEQTGEIRCAMDHILEAERKGEINHDNVLYIVENINVA 3816 (1)
4917 AIETTLWSIEWGIAELVNHPSIQSKVREEMASVLGGAAVTEPDLERLPYLQAVVKETLRLRMAIP 5093
5094 LLVPHMNLADGKLAGYDIPAESKILVNAWFLANDPKRWVRPDEFRPERFLEEEKAVE 5264
5265 AHGNDFRFVPFGVGRRSCPGIILALPIIGITLGRLVQSFDLLPPPGMDKVDTT 5423 (fs)
EKPGQFSTQILKHATVVCQ (fs)
PIDA*

>AP004859.1a (japonica cultivar-group) chromosome 2 clone OJ1756_B04
6 diffs to AP004850.1a 32815 seq identical after aa 75
AU058037.1 Rice callus Oryza sativa cDNA clone C62026_6Z. 58% to 73A5 
AU093333.1 this seq is partial but = AP004850.1b that is complete
73615 MAASAMRVAIATGASLAVHLFVKSFVQAQHPALTLLLPVAVFVGIAVGAKGGSGGDGKAP 73436
73435 PGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLRLGVRNLVVVSDPKLATEVLHTQ 73256
73255 GVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRVMTLPFFTARVVQQYKAMWEAEM 73076
73075 DAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFDARFESVDDPMFIEATRFNSERS 72896
72895 RLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAFFNNNYVEKRR 72752
      small sequence gap
72588 WSIEWALAEVVNHPAVQSKVRAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLHSPIP 72409
72408 LLVPHMNLEEAKLGGYTIPKGSKVVVNAWWLANNPALWENPEEFRPERFLEKESGVDATV 72229
72228 AGKVDFRFLPFGVGRRSCPGIILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFS 72049
72048 LHIAKHSVVAFHPISA 72001

>AP004859.1b $F (japonica cultivar-group) chromosome 2 clone OJ1756_B04
AU058037.1 Rice callus Oryza sativa cDNA clone C62026_6Z. 58% to 73A5 
89777 MAASVVRVAIATGASLAVHLFVKSFLQAQHPALTLLLPVAVFAGIAVGAKGGNGGDGKAP 89956
89957 PGPAAVPVFGNWLHVGNDLNHRFLAAMSARYGPVFRLRLGVRNLVVVSDPKLATEVLHTQ 90136
90137 GVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRVMTLPFFTARVVQQYKAMWEAEM 90316
90317 DAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFDARFESVDDPMFIEATRFNSERS 90496
90497 RLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAFFNNNYVEKRR 90640
      NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAI 90894
90895 ETTLWSIEWALAEVVNHPAVQSKVRAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLH 91074
91075 SPIPLLVPHMNLEEAKLGGYTIPKGSKVVVNAWWLANNPALWENPEEFRPERFLEKESGV 91254
91255 DATVAGKVDFRFLPFGVGRRSCPGIILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKG 91434
91435 GQFSLHIAKHSVVAFHPISA 91494

>AP004850.1a $F (japonica cultivar-group) chromosome 2 clone OJ1342_D02
98% identical to AP004850.1b  100% to AP004859.1b
32815 MAASVVRVAIATGASLAVHLFVKSFLQAQHPALTLLLPVAVFAGIAVGAKGGNGGDGKAP 32636
32635 PGPAAVPVFGNWLHVGNDLNHRFLAAMSARYGPVFRLRLGVRNLVVVSDPKLATEVLHTQ 32456
32455 GVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRVMTLPFFTARVVQQYKAMWEAEM 32276
32275 DAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFDARFESVDDPMFIEATRFNSERS 32096
32095 RLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAFFNNNYVEKRR 31952
31797 NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAIETTLWSIEWALAEVVNHPAVQSK 31621
31620 VRAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLHSPIPLLVPHMNLEEAKLGGYTIP 31441
31440 KGSKVVVNAWWLANNPALWENPEEFRPERFLEKESGVDATVAGKVDFRFLPFGVGRRSCP 31261
31260 GIILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFSLHIAKHSVVAFHPISA 31090

>AP004850.1b $F (japonica cultivar-group) chromosome 2 clone OJ1342_D02
100% identical to AP004859.1a AU093333.1
48977 MAASAMRVAIATGASLAVHLFVKSFVQAQHPALTLLLPVAVFVGIAVGAKGGSGGDGKAP 49156
49157 PGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLRLGVRNLVVVSDPKLATEVLHTQ 49336
49337 GVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRVMTLPFFTARVVQQYKAMWEAEM 49516
49517 DAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFDARFESVDDPMFIEATRFNSERS 49696
49697 RLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAFFNNNYVEKRR 49840
      NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAI 50094
50095 ETTLWSIEWALAEVVNHPAVQSKVRAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLH 50274
50275 SPIPLLVPHMNLEEAKLGGYTIPKGSKVVVNAWWLANNPALWENPEEFRPERFLEKESGV 50454
50455 DATVAGKVDFRFLPFGVGRRSCPGIILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKG 50634
50635 GQFSLHIAKHSVVAFHPISA 50694

>aaaa01006093.1a $FI CYP73 (indica cultivar-group) 99% to AP004850.1b
6441 MAASAMRVAIATGASLAVHLFVKSFVQAQHPALTLLLP
6327 VAVFVGIAVGAKGGSGGDGKAPPGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLR 6148
6147 LGVRNLVVVSDPKLATEVLHTQGVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRV 5968
5967 MTLPFFTARVVQQYKAMWEAEMDAVVDDVRGDAVAQGAGFVVRRRLQLMLYNIMYRMMFD 5788
5787 ARFESVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAF 5608
5607 FNNNYVEKRR (2) 5578
5431 NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAIETTLWSIEWALAEVVNHPAVQSKV 5252
5251 RAEINDVLGDDEPITESNIHKLTYLQAVIKETLRLHSPIPLLVPHMNLEEAKLGGYTIPK 5072
5071 GSKVVVNAWWLANNPALWENPEEFRPERFLEKESGVDATVAGKVDFRFLPFGVGRRSCPG 4892
4891 IILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFSLHIAKHSVVAFHPISA* 4721

>aaaa01006093.1b $FI CYP73 (indica cultivar-group) 99% to AP004850.1a
98% to AAAA01006093.1a
11410 MAASVVRVAIATGASLAVHLFVKSFLQAQHPALTLLLP
11524 VAVFAGIAVGAKGGNGGDGKAPPGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLR 11703
11704 LGVRNLVVVSDPKLATEVLHTQGVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRV 11883
11884 MTLPFFTARVVQQYKAMWEAEMDAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFD 12063
12064 ARFKSVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAF 12243
12244 FNNNYVEKRR (2) 12273
12431 NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAIETTLWSIEWALAEVVNHPAVQSKV 12610
12611 RAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLHSPIPLLVPHMNLEEAKLGGYTIPK 12790
12791 GSKVVVNAWWLANNPALWENPEEFRPERFLEKESSVDATVAGKVDFRFLPFGVGRRSCPG 12970
12971 IILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFSLHIAKHSVVAFHPISA* 13141

>CYP73A35P   $P Oryza sativa (rice) 
            GenEMBL AP003446.1 March 29, 2001
                    AP003302.1  Feb. 21, 2001
            Both sequences have the same frameshifts so
            This is probably a pseudogene

MDLLFVERLLVGLLAAAVVAIAVSKLRGRKLRLPPGPTPVPVFGNWLQVGDDLNHRNLAA
LARRFGDIFLLRMGQRNLVVVSSPPLAREVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFT
VYGDHWRKMRRIMTVPFFTGKVVQRHRAGWEAEAAAVVDGLRADPAAA 168 (25 nuc. deletion and frameshift in both sequences)
175 RRRLQLMMYSNVYRIMFDRRFESADDPLFLRLKALNGERSRLAQSFEYNYGDFIPILRPF
LRGYLRICEEVKETRLKLFKDFFLEERK (2?)
NGLKCAIDHILEAQQKGEINEDNVLYIVENINVA (1)
AIETTLWSMEWAIAEL (2 nuc. insertion and frameshift in both seqs.)
VNHGEIQEKLRRELDTVLGPGRQITEPDTHRLPYLQAVVKETLRLRMAIPLLVPHMNLRD
AELAGYGIPAESKVLVNAWYLANDPGRWRRPEEFRPERFLEEERNVEANGNDFRYLPSGA
GRRSCPGIVLALPILGVTIGRLVQNFELLPPPGKDRVDTTEKGGQFSLHILKHSTIVAKPRAF*

>aaaa01004255.1 $PI (indica cultivar-group) ortholog of 73A35P
16157 MDLLFVERLLVGLLAAAVVAIAVSKLRGRKLRLPPGPTPV 16038
16037 PVFGNWLQVGDDLNHRNLAALARRFGDIFLLRMGQRNLVVVSSPPLAREVLHTQGVEFGS 15858
15857 RTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTGKVVQRHRAGWEAEAAAVVDG 15678
15677 LRADPA 15660 (fs)
15660 RRRL*LMMYNNVYRIMFDRRFESADDPLFLRLKALNGERSRLAQSFEYNYGDFIPILRPF 15481
15480 LRGCLRICEEVKETRLKLFKDFFLEERK
      KAMDNNGLKCAIDHILEAQQKGEINEDNVLYIVENINVA
15092 AIETTLWSMEWAIAEL 15045
      VNHGEIQEKLRRELDTVLGPGRQITEPDTHRLP 14944
14943 YLQAVVKETLRLRMAIPLLVPHMNLRDAELAGYGIPAESKVLVNAWYLANDPGRWRRPEE 14764
14763 FRPERFLEEERHVEANGNDFRYLPSGAGRRSCPGIVLALPILGVTIGRLVQNFELLP 14593
14592 PPGKDRVDTTEKGGQFSLHILKHSTIVAKPRAF* 14491

>AP003261.1 $P chromosome 1 clone P0471B04, 
N-terminal exon of a CYP75 like sequence 70% identical to X70824 but no other part of 
the gene is found.  Identical to AP003227 87336-87082 almost identical to AP003214
132381 MELAALCTDPVVLSAAFLCLLLNLSLCSYRPPSPGGGRRLPLGPPGVPVLGALPLVGPAPHADLASLARK 132172
132171 YGPIMYLKMGTCGVV 132127

>AP003214.3 $P almost identical to AP003227 related to CYP75
165814 MELAVLCTDPVVLSGPFLCLLLHLSLCSYR 165725 (2?)
157244 RPPSPGGGRRLPPD 157203 frameshift 
157203 PPGVPVLDALPLVGPAPHTDLASLARKYGPIMYLKMGTCGVV 157078 frameshift
AASSPCAARAFL 157053

>AC021892.5 $F chromosome 10 clone OSJNBa0053D03 21 unordered pieces
          Length = 175567 65% to 75B1
62759 MDVVPLPLLLGSLAVSAAVWYLVYFLRGGSGGHAA
      RKRRPLPPGPRGWAVLGNLPQLGDKPHHTMCALGRQYGPLFRLRFGCAEVVEAATS 62487
62479 AAQFLRGHDANFSNRPPNSGAEHVAYNYQDLVFAPYGARWRALRKLCALHLFSAKALDDL 62300
62299 RAVREGEVALMVRNLARQQAASVALGQEANVCATNTLARATIGHRVFAVDGGEGARE 62129
62128 FKEMVVELMQLAGVFNVGDFVPALRWLDPQGVVAKMKRLHRRYDNMMNGFINER 61967
61966 KAGAQPDGVAAGEHGNDLLSVLLARMQEEQKLDGDGEKITETDIKALLL
61786 NLFTAGTDTTSSTVEWALAELIRHPDVLKEAQHELDTVVG 61607
61606 RGRLVSESDLPRLPYLTAVIKETFRLHPSTPLSLPREAAEECEVDGYRIPKGATLLVNVW 61427
61426 AIARDPTQWPDPLQYQPSRFLPGRMHADVDVKGADFGLIPFGAGRRICAGLSWGLRMVTL 61247
61246 MTATLVHGFDWTLANGATPDKLNMEEAYGLTLQRAVPLMVQPVPRLLPSAYGV* 61085

>AC119149.2 $F Nipponbare strain, clone OSJNBb0079E01, from chromosome 10
53% to 75B1
D48413, AU032067 AU173484.1 AU222694.1 47% IDENTICAL TO 75B1 N-TERMINAL REGION
C99304 opposite end = C19579 65% to 75B1 74% to AC021892
3 prime UTR matches AU173485 Rice root Oryza sativa cDNA clone R3314. 
Which is the opposite end of AU173484 so these are from the same gene
3 prime UTR Also = AU032964 Rice shoot Oryza sativa cDNA clone S0065_2Z.
AU032242 58% identical to C97611 47% to AA754300 47% to 75B1 I helix
74682 MEVAAMEISTSLLLTTVALSVIVCYALVFSRAGKARAPLPLPPGPRGWPVLGNLPQLGGK 74503
74502 THQTLHEMTKVYGPLIRLRFGSSDVVVAGSAPVAAQFLRTHDANFSSRPRNSGGEHMAYN 74323
74322 GRDVVFGPYGPRWRAMRKICAVNLFSARALDDLRAFREREAVLMVRSLAEASAAPGSSSP 74143
74142 AAVVLGKEVNVCTTNALSRAAVGRRVFAAGAGEGAREFKEIVLEVMEVGGVLNVGDFVPA 73963
73962 LRWLDPQGVVARMKKLHRRFDDMMNAIIAERRAGSLLKPTDSREEGKDLLGLLLAMVQEQ 73783
73782 EWLAAGEDDRITDTEIKALIL (0) 73720
65761 NLFVAGTDTTSTIVEWTMAELIRHPDILKHAQEELDVVVGRDRLLSESDLSHLTFFHAII 65582
65581 KETFRLHPSTPLSLPRMASEECEIAGYRIPKGAELLVNVWGIARDPAIWPDPLEYKPSRF 65402
65401 LPGGTHTDVDVKGNDFGLIPFGAGRRICAGLSWGLRMVTMTAATLVHAFDWQLPADQTPD 65222
65221 KLNMDEAFTLLLQRAEPLVVHPVPRLLPSAYNIA* 65117

>AP003623.1 $F chromosome 6 clone P0642B07 41% to 76C4 = AU095771
89% to CONTIG OF C72003, C99202 
D46292        42% to 71B6 and 71B8   3/95   8/95 17-91 REGION 
AU032289 29% to 76C3, 30% to 71B4 
84245 MENSQVWLLWGALSVAVLFYLSTLRRRHAGGKPLPPGPTPLPLIGNLHLAGGTSFHHKLRDLAR 84436
84437 VHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVFIPSS 84616
84617 DPRWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLMAYLRAHAGEEVLLGQAMHTGLL 84790
84791 NLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKPNISDFYPFLRPLDLQGLRRWTTKRFNRVFSIMGDI 85006
85007 IDRRLAHIRDNKPSHNDFLDSLLELMAAGKIDRVNVLDMLFEAFVAGADTMALTLEWVMA 85186
85187 ELLKNPGVMAKARAELRDVLGDKEVVEEADAARLPYLQAVLKEAMRLHPVGALLLPH 85357
85358 FAVEDGVEVGGYAVPKGSTVLFNAWAIMRDPAAWERPDEFVPERFVERAPLLDF 85519
85520 RGKDAEFMPFGSGRRLCPGLPLAERVMPFILASMLHTFEWKLPGGMTAEDV 85672
85673 DVSEKFKSANVLAVPLKAVPVLIK* 85747

>aaaa01004667.1b $FI (indica cultivar-group) ortholog of AP003623.1  
7298 MENSQVWLLWGALSVAVLFYLSTLRRRYAGGKPLPPGPTPLPLIGNLHLAGGTFHHKLR 7122
7121 DLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVF 6942
6941 IPSSDPQWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLIAYLRAHAGKEVLLGQAMYTG 6762
6761 LLNLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKPNISDFYPFLRPLDLQGLRRWT 6582
6581 TKRFNRVFSIMGDIIDRRLAHIRDGKPRHDDFLDSLLELMATGKMERVNVVNMLFEAFVA 6402
6401 GVDTMALTLEWVMAELLHNPAIMARVRAELSDVLGGKEAVEEADAARLPYLQAVLKEAMR 6222
6221 LHPVGALLLPHFAAEDGVEIGGYAVPRGSTVLFNAWAIMRDPAAWERPDEFVPERFLGRS 6042
6041 PPLDFRGKDVEFMPFGSGRRLCPGLPLAERVVPFILASMLHTFEWKLPGGMTAEDVDVSE 5862
5861 KFKSANVLAVPLKAVPVLIK 5802

>aaaa01004667.1a $PI (indica cultivar-group) C-term 
1103 LHGGTTAEDVDVSEKFKSANVLAVPLQAVPVL 1008

>aaaa01008385.1 (indica cultivar-group) missing the N-terminal
ortholog of C72003 contig
8309 TLKLGLATNVIISSREAAAEAYTKYDRHLAARATPDTFRACGFADRSMVFIPSSDPQW 8136
8135 KALRGIHASHVFTPRVLAAVRPIRERKVGDLIAYLRAHAGEEVLVGHAMYTGILNMVSFS 7956
7955 YFSIDIVGMGSRMARELREVVDDIIVVVGKPNVSDFYPFLRPLDLQGLRRWTTKRFNRVF 7776
7775 SIMGDIIDRRLAHIRDNKPRHDDFLDSILELMAAGKIDRVNVLNMLFEAFVAGADTMALT 7596
7595 LEWVMAELLKNPGVMAKARAELRDVLGDKEIVEEADAARLPYLQAVLKEAMRLHPVGALL 7416
7415 LPHFAMEDGVEVGGYAVPKGSTVLFNAWAIMRDPAAWERPDEFVPERFVERTPQLDFRGK 7236
7235 DVEFMPFGSGRRLCPGLPLAERVVPFILASMLHTFEWELPGGMTAEELDVSEKFKTANVL 7056
7055 AVPLKAVPVLIK 7020

>CONTIG OF C72003, C99202 (partial) 34% to 76C4 some identical runs with AU032289
34% TO 76C4 same clone = C19444 
90% to AP003623.1 opposite end of AU176462
AU176462.1 clone E10426.Length = 475 90% to AP003623.1 also AU182232.1
opposite end of C19444 CONTIG OF C72003, C99202 lower case from AP003623.1
There are two closely related genes
This part 97% to AAAA01008385.1 93% to AAAA01004667.1
ATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVFIPSSDPQWKA
LRGIHASHVFTPRVLAAVRPIRERKVGDLIAYLRAHAGEEVLVGHAMYTGILNMVS
FSYFSVDIVDMGSQMARELREVVDDIILVVGKPNVSDFYPFLRPLDLQGLRRW
TTKRFNRVFSIMGDIIDRRLAHIRDNKPRHDDFLDSILELXAAGKIDRVQVLNMLFEGF

This part 98% to AAAA01008385.1 90% to AAAA01004667.1 from opposite end of C19444
2   FNAWAIMRDAAAWERPDEFVPERFVERTPQLDFRGKDVEFMPFGSGRRLCPGLPLAERVVP 184
185 FILASMLHTFEWELPGGMTAEELDVSEKFKTANVXAVPLKAVPVLIK* 328

*******100, 68F japonica, 13 japonica partials, 19 japonica pseudogenes
21 indica accessions in 20 seqs

>aaaa01004597.1a (indica cultivar-group) ortholog to BI808700.1 (3 diffs)
runs off end of scaffold
2   WAIMRDPTAWERPDEFMPERFLQRAEVDFRGKDFEFMPFGAGRRLCPGLPMAERVVPFI 178
179 LASLLHAFEWRLPDGMSAEELDVSEKFTTANVLTVPLKAVPILASSASELQAS* 340

>aaaa01004597.1b $PI (indica cultivar-group) missing N-term 42% to 76C4
89% to N-term of AU172561.1 6 diffs with BI808700.1
RRLPPGPTPLPVIGNVLSLRGNMHHALARLARERYGPVMA
LKLGLVTAVVVSSPDAAREAFTKHDRRLAARAVPDTSRVRGFADRSMIWLPSSDTRWKTL
RGVVATHVFSPRSIAAARGVRERKVRDIVGYFAAHVGEVVDVGEAVYSGVVNLVSNAFFS
GDVVDVGEESAHGLREAVEDIILAIAKPNVSDLFPFLRPLDLQGWRRWAEKRYDTVFDIL
DNITNSRLADASAGNHAGDFLDSLLGLMSYGKIARDDVTTIMFDVFGAGTDTIAITVQWA
MAELLRNPSIMAKARTEMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAPILLPHQ
AAEDGVEIGGYAVPKGSTVIFNVWAIMRDPTAWERPDEF
MPERFLQRAEVDFRGKDFEFMPFGAGRRLCPGLPMAERVVPFIL (2) 14530
Inverted orientation
ASLLHAFEWRLPDGMSAEELD 
Small deletion
14623 VTVPLKAVPILASSASELQAS* 14688

>aaaa01018916.1 $PI (indica cultivar-group) missing N-term, inverted seq at end
85% to N-term of AU172561.1 4 diffs with BI808700.1
4748 RRLPPGPTPLPVIGDVLGLRGNMHHALARLARERYGPVMTLKLGLVTAVVVSSPGA 4581
4580 AREAFTRHDRRLAARTVPDISRARGLAGRSMIWLPSSDPRWKTLRGVVAAHVFSPRSLAA 4401
4400 ARGVRERKVRDIVGYFAAHVGEVVDVGEAVYSGVVNLVSNAFFSGDVVDVGEESAHGLRE 4221
4220 AVEDMISAIAKPNVSDLFPFLRPLDLQGWRRWAEKRYDTVFDILDNITNSRLADASAGNH 4041
4040 AGDFLTPSLGLMSYGKIARDDVTTIMFDVFGAGTDTIAITVQWAMAELLRNPSIMAKART 3861
3860 EMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAPILLPHQAAEDGVEIGGYAVPKG 3681
3680 STVIFNVWAIMRDPTAWERPDEFMPERFLQRAEVDFRGKDFEFMPFGAGRRLCPGLPMAE 3501
3500 RVVPFIL
Inverted sequence orientation
ASLLHAFEWRLPDGMSAEELD

VSEKFTTANVLTVPLKAVPILASSASELQAS* 3321

>AP005254.1a $F (japonica cultivar-group) chromosome 8 = AF488522.1 PM-II
42% to 76C4 = BI808700.1
59535 MERDAWLLCAALAAATVVYYLACTTSRRAQRRRLPPGPTPLPVIGNVLSLRGNMHHALARLARER 59341
59340 YGPVMALKLGLVTAVVVSSPDAAREAFTKHDRRLAARAVPDTSRVRGFADRSMIWLPSSD 59161
59160 TRWKTLRGVVATHVFSPRSIAAARGVRERKVRDIVGYFAAHVGEVVDVGEAVYSGVVNLV 58981
58980 SNAFFSGDVVDVGEESAHGLREAVEDIILAIAKPNVSDLFPFLRPLDLQGWRRWAEKRYD 58801
58800 TVFDILDNITNSRLADASAGNHAGDFLDSLLGLMSYGKIARDDVTTIMFDVFGAGTDTIA 58621
58620 ITVQWAMAELLRNPSIMAKARTEMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAP 58441
58440 ILLPHQAAEDGVEIGGYAVPKGSTVIFNVWAIMRDPTAWERPDEFMPERFLQRAEVDFRG 58261
58260 KDFEFMPFGAGRRLCPGLPMAERVVPFILASLLHAFEWRLPDGMSAEELDVSEKFTTANV 58081
58080 LTVPLKAVPILASSASELQAS* 58015

>AP005254.1b $P (japonica cultivar-group) chromosome 8 
82126 MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALARL 81947
81946 AGEHGPVMALKLGLVTTVVVSSAGAAREAFTKHDRRLAARAVPDTTRARGFASRSMIWL  81770
81769 PSSDPRWKTLRGVAATHVFSPRSLAAARGVRERKVRDIVGHLAGHAGEVVDVG (fs)   81611
      QVVYGGVLN 44 amino acids missing
81582 LRRLDLQGWRRWA (fs) 81544 
81542 EKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGTIARDDVTSIMYDL 81363
81362 FGAGTDTIAITVEWAMAELLRNPSVMAKARAEMNHVLAGKVKATEMEENDVEKLPYLQAV 81183
81182 VKEVMRLHPAAPILVPHRAEEDDAEIGGYAVPKGSTVIFNVWAIMRDPVAWERPEEFMPE 81003
81002 RFLDMAEEVDFRGKDHKFMPFGTGRRLCPGLSMAKRVVPFILASLLHAFEWRLPAGVTAE 80823
80822 ALDLSEKFTTVNVLVTPIKAIPILASDEI* 80733

>aaaa01076605.1 (indica cultivar-group) ortholog of AP005254.1b 100% 
AU172561.1 (1 diff)
423 MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALARL 602
603 AGEHGPVMALKLGLVTTVVVSSAGAAREAFTKHDRRLAARAVP 731

>AU172561.1 (partial) clone E2548.Length = 362 similar to AC092559.2 opposite end = AU0172562
AU172562.1 clone E2548. Length = 445 67% to AP003623.1 also BI809979.1
95-96% to pseudogene aaaa01013893.1 95% to 98% to AP005254.1b
this might be AP005254.1b 
68 MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALARLA
   GEHGPVMALKLGLVTTVVVSSAGAAREAFTKHDRALG 361
Gap 
MEENDVENLPYLQPVKEVMRLHPA
APILVPHRAEEDDAEIGGYAVPKGSTVIFNVWAIMRDPVAWERPKEFMPKRFLDMAEEVDFRGKDHKFMPFGTGRRLCPGLSMAKR
VVPFILASLLHAFEWRLPAGVTTEALDLNEKFTTVNVLVTPIKAIPILASDQI*

>aaaa01013893.1 $PI (indica cultivar-group) pseudogene (gap in sequence)
3 diffs with N-term of AU172561.1 93% to C-term of AU172561.1
ortholog of AP005254.1b (5 diffs)
3604 MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALERL 3783
3784 AGEHGPVMALKLGLVTAVVVSSAGAAREAFTKHDRRLAARAVPDTTRARGFASRSMIWL 3960
3961 PSSDPRWKTLRGVAATHVFSPRSLAAARGVRERKVRDIVGHLAGHAGEVVDVGKVVYGGV 4140
4141 LNL 44 amino acid gap
     RRLDLQGWRRWAE 4188
4189 KRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGTIARDDVTSIMYDLF 4368
4369 GAGTDTIAITVEWAMAELLRNPSVMAKARAEMNHVLAGKVKATEMEENDVEKLPYLQAVV 4548
4549 KEGMRLHPAAPILVPHRAEEDDAEIGGYAVPKGSTVIFNVWAIMRDPVAWERPEEFMPER 4728
4729 FLDMAEEVDFRGKDHKFMPFGTGRRLCPGLSMAKRVVPFILASLLHAFEWRLPAGVTAEA 4908
4909 LDLSEKFTTVNVLVTPIKAIPILASDQI* 4995

>AP005254.1c $F (japonica cultivar-group) chromosome 8 = AF488521.1 PM-I
1 diff with BM038607.1 = AP005245.1 15190-16707 41% to 76C2
103909 MEREAWLLCAALAAAMVYYYYYYLACTTRRAQRRLPPGPTPLPVIGNVLSLSGDMHHEL 
104086 ARLAREQYGPVMTLKLGLFTAVVVSSPDAAREAFTKHDRRLAARTVPDISRARGLTGRSM 
104266 IWLPSSDPRWKTLRSAVATHFFSPRSLAAARGVRERKVRDIVNYFAGHAAEVIDVGEAVY 
104446 GGVINIVSNAFFSADVVDVGKESAHGLRETLEDIILAIAKPNVSDLFPFLRRLDLQGWRR 
104626 WAEKRYDKVFGILDDKINSRLADADADASTKKHGDFLDSLLELMSAGKIACDDVTTVMFD 
104806 AFGAGTDTISNTVVWAMAELLRNPSIMAKVRAEMEDVLAGKKTIEENDTEKLPYLRAVIK 
104986 EAMRLHPVAPILLPHRAAEDGVEIGGYAVPKGSTVIFNVWTIMRDPAAWERPEEFMPERF 
105166 LQRAEVDFRGKDFEFIPFGAGRRLCPGLPMTERVVPFILASLLHAFEWRLPVGVAAETLD 
105346 LSEKFTTVNVLVTPLKAIPILASHQI* 105426

>AAAA01000493.1 Ortholog of AP005254.1c with small gap in I helix
3400 ADASTKKHGDFLDSLLELMSAGKIACDDVTTVMFDAFGA 3516
3509 SELLRNPSIMAKVRAEMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAPILLPHRA 3688
3689 AEDGVEIGGYAVPKGSTVIFNVWTIMRDPAAWERPEEFMPERFLQRA-EVDFRGKDFEFI 3865
3866 PFGAGRRLCPGLPMTERVVPFILASLLHAFEWRLPVGVAAETLDLSEKFTTVNVLVTPLK 4045
4046 AIPILAS 4066

>AP005254.1d (japonica cultivargroup) chromosome 8 aa 227-504
same as AP005245.1 21717-20866 ortholog of AAAA01000493.1 99% partial
upstream seq missing in both accession numbers and in AAAA01000493.1
probable pseudogene
AAAA01000493.1 has two copies of this and a third sequence
       GGVLN
110436 LRRLDLQGWRRWAEKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGK 110257
110256 IARDDVTSIMFDLFGAGTDTIAITVEWAMAELLRNPSVMTKARAEMNHALAGKKTIEEND 110077
110076 VEKLPYLQAVLREAMRLHPAAPILVPHRAEEDGAEIGGYAVPKGSTVIFNVWAIMRDPAA 109897
109896 WERPEEFMPERFMDMAEEVDFRGKDYKFIPFWAGRRLCPGLLMAERVVPFILASLLHSFE 109717
109716 WRLPGGMTAESLDLSEKFTTVNVLVTPLKAIPILASKNENIRE* 109585

>AP005114.1a $F (japonica cultivar-group) chromosome 2 clone P0689H05
BI813130.1 cDNA clone J002D01.Length = 497 75% to BI808700.1 68% to AP003623
BI813468.1 K008G06 Oryza sativa mature leaf library induced by M.grisea Oryza
sativa cDNA clone K008G06.Length = 474
best rice match AP003623.1 chromosome 6 63% clone P0642B07 41% to 76C4 = AU095771
26813 MEKLKSELWMTAVATCMSLLLYLTILRRRHASGGRSLALPPGPTPLPLIGNLLCLGGIFHQTLA 27004
27005 KLARVHGPVMTLKLGLTTAVVVSSAEAAREAYTKHDQRLAARPVPDAFRANGFSERSIVF 27184
27185 SPSSDPQWKNLRGIHATHIFSPRALAALRGIRERKVRDIVGYIRTVAGEEMCVREVVHNG 27364
27365 VLNLISTSFFSMDMADVRSESARGLRGLIEDIIATVAGPNVSDFFPFLRQLDLQGLRRQT 27544
27545 GSHLGIVFGLLDDIIDRRMAETRDHPDKQRHGDFLDALISLASAGKIPRYHITYLLFDVF 27724
27725 AAGADTMTTTVEWAMAELLRNPRVMAKVRAEVTDALGGRESFDEGDAASLTYLQCVFKEA 27904
27905 MRLHPVGSILVPHLAVQDGVEIGGYAVPKGTTVIFNAWAIMRDPAAWESPDQFLPERFLH 28084
28085 KEESSSPPLELRGKDYEYIPFGSGRRLCPGLPLAERAVPFILASLLHAFEWRLPDGMSPD 28264
28265 DMDMTEKFATANVLATPLKAVPVASHTS* 28351

>aaaa01008405.1 (indica cultivar-group) top part of ortholog to BI813130.1
AAAA01075650.1 (indica cultivar-group) ortholog of BI813130.1 (4 diffs)
580 MEKLKSELWMTAVATCMSLLLYLTILRRRHASGGRSLSLPPGPTPLPLIGNLFCLGGIFH 401
400 QTLAKLARVHGPVMTLKLGLTTAVVVSSAEAAREAYTKHDQRLAARPVPDAFRANGFSER 221
220 SIVFSPSSDPQWKNLRGIHATHIFSPRALAALRGIRARKVRDIVGYIRTVAGEEMCVREV 41
40  VHNGVLNLIST 8
ELLRNPRVMAKVRAEVMDALGGKESFDEGDAASLTYLQCVFKEAMRLHPVGSILVPHLAQ
QDGVEIGGYAVPKGTTVIFNAWAIMRDPAAWESPDQFLPERFLHKESSSPPLELRGKDYEYIPF 368
367 GSGRRLCPGLPLAERAVPFILASLLHAFEWRLPDGMSPDDMDMTEKFATANVLATPLKAV 188 (fs)
186 QSSHTSYIYSLRPKI* 139

>AP005114.1b $F (japonica cultivar-group) chromosome 2 
BI811079.1 clone K015D02.Length = 347 57% to AC087550.2 C-helix
41% to 71B11
120645 MEDNKLILALGLSVLFVLLSKLVSSAMKPRLNLPPGPWTLPLIGSLHHLVMKSPQIHRSL 120824
120825 RALSEKHGPIMQLWMGEVPAVIVSSPAVAEEVLKHQDLRFADRHLTATIEEVSFGGRDVT 121004
121005 FAPYSERWRHLRKICMQELLTAARVRSFQGVREREVARLVRELAADAGAGGDAGVNLNER 121184
121185 ISKLANDIVMVSSVGGRCSHRDEFLDALEVAKKQITWLSVADLFPSSKLARMVAVAPRKG 121364
121365 LASRKRMELVIRRIIQERKDQLMDDSAAGAGEAAAGKDCFLDVLLRLQKEGGTPVPVTDE 121544
121545 IIVVLLF (0) 121565
122803 DMFTGASETSPTVLIWILAELMRCPRVMAKAQAEVRQAAVGKTRITENDIVGLSYLKMVI 122982
122983 KEALRLHSPAPLLNPRKCRETTQVMGYDIPKGTSVFVNMWAICRDPNYWEDPEEFKPERF 123162
123163 ENNCVDFKGNNFEFLPFGSGRRICPGINLGLANLELALASLLYHFDWKLPNGMLPKDLDM 123342
123343 QETPGIVAAKLTTLNMCPVTQIAPSSAEDAS* 123438

>AU173996.1 (partial) cDNA clone S12633. Length = 451 New seq 
66% to AP003623.1 aa 413-458 no larger pieces are known
12  EVDXWGKTFEFIPFGSGRRVCAGLPMAERVVPFMLASLLRAFEWRLPDGVSAEELDM
RXRFTIANFRAIPXKAVPVVVS*

>aaaa01003137.1 $FI (indica cultivar-group) ortholog to AU173996.1
44% to 76C4
2741 MDVNQLWLLWATLAVSLLYYISNRRRRVGGRRRCPPGPMPLPLVGNLLNLRGHLPPALAR 2920
2921 LARTYGPVMMLKMGLTTTVVISSGDAAREAFTKHDRHLAARTVLDVTRSLDFADRSMIWL 3100
3101 PSSDTVWKTLRGVTAASIFSPRGLAALRGVRESKVRDLVGYFRGRAGEVVDVRHAVYGCM 3280
3281 LSLVSSAFFSVDVVDLSAESENEFRQSMTFLMEVVSKTNVSDFFPFLRPLDLQGWRRLTE 3460
3461 RYLGRVTCFLDDVIDRRFAADASANRHGDFLDSLLDLVSTGKIVRENVTTILLDVFIAGS 3640
3641 DTITATVEWAMAELLRNPSEMAKVRAEMDGALGGKKTVDEPDIARLPYLQAVVKEAMRLH 3820
3821 PAAPLLLPHRAVEDGVEVGGYCVPKGSMVIFNVWAIMRDPAAWERPEEFMPERFIRRGDD 4000
4001 DEVDFWGKTFEFIPFGSGRRVCAGLPMAERVVPFMLASLLRAFEWRLPDGVSAEELDMRH 4180
4181 RFTIANFRAIPLKAVPVVVS* 4243

>AP003267.1 $F chromosome 1 clone P0496H05 38% to 76C4
55979 MEKSSELWLLWAVFSASLVFLYLTIRRRSGAGAGGKPPLPPGPTPLPLIGNLLDLRGGVIHDKLAALARVYG 55764
55763 PVMMIKLGLNDAVIISSRDAAREAFTRYDRHLAARAIPDTFRANGFHERSAVFLPSSDER 55584
55583 WKALRGIQGTHIFTPRGLAAVRPVRERKVRDIIAYFRDHAGEELVIRQAIHTGVLNLVSS 55404
55403 SFFSMDIAGMGSETARELREHVDEIMTVFAQPNVSDYFPFLRRLDLQGLRRSTKRRFDR 55227
55226 IFSILDDIVERRLVDRGERGGEGGASSNSSKSKHQYDGGDFLDALLELMVTGKM 55065
55064 ERDDVTAMLFEAFVAGGDTVAFTLEWVMADLLRNPPVMAKLRAELDDVLGGKDQSAIEEH 54885
54884 DAGRLPYLQAVLKESMRLHSVGPLLHHFAAEDGVVVGGYAVPRGATVLFNTRAIMRDPAA 54705
54704 WERPEEFAPERFLAREGKAPVDFRGKEADFIPFGSGRRLCPGIPLAERVMPYILALMLRE 54525
54524 FEWRLPDGVSPEELDVSEKFMSVNVLAVPLKAVPVKVIN* 54405

>AC078944.5a $P clone OSJNBa0089D15 large insertion probably makes this a pseudogene
47% to 76C2
92923  MASFLPWLPWLLAALLSVYLLDLLAHSRRLLPPGPRPLPLIGSLHLLGDQPHRSLAGLAK 93102
93103  MYGPLMSLRLGAVTTVVVSSPDVAREFLQRHNAAFASRSVPDATGDHATNSVAWLPNSPR 93282
93283  WRALRRIMAAELFAPHRLDALRRLRREKVQELVDHVARLAEREGGAAAVDVGRVAFATSL 93462
93463  NLLSSTIFSRNLTSLDDHGESMEFKEVVVEIMEAGGCPNVSDFFPAIAAADLQGWRRRMA 93642
93643  GLFARLHRVFDAVVEERLSERDAGEARKGDFLDVLLDVAARDNDSAGLDRDTLRSLFT   93816 (0)
103281 DLFAAGSDTSPSIVEWAIAELMRNPLCMIRAC 103376 probable 10.5 kb insertion here
113843 DELSQVIGSGTNIEESDIGQLPYL 113914
113915 QAVVKETFRLHPPVPLLLPRQAETTTNIAGYTIPKGARVFVNVWAIGRHK 114064
114065 DTWSQPEKFMPERFFERNIDFRGVHFELIPFGAGRRICPRMPLANRMVHLVLGSLLNQFK 114244
114245 WNLPVDIERNGIDMSEKFGLTLVKAIPLCALVTPISVESGDH* 114373

>AC078944.5b $F clone OSJNBa0089D15 
47% TO AJ237995.1 Vitis vinifera 76F2 45% to 76C3
145298 MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLAKKYGP 145492
145493 LMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGPRWRAL 145672
145673 RRIMATELFSPHQLDALQQLRQEKVAELVDHVARLAREGAAVDVGRVAFATSLNLLS 145843
145844 RTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARLFT 146023
146024 QLHRLFDDEMDHRKLHSRHGGPGENGKEKDDFLEVLLRLGARDDDIAGLDGDTLRSLF 146197 (0)
150187 DLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLP 150348
150349 YLQAVIKETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAIGRD 150498
150499 KNIWTEPEKFMPERFLDRTIDFRGGDLELIPFGAGRRICPGMPLAIWMVHVVLASLLIH 150675
150676 FKWRLPVEVERNGIDMTEKFGLTLVKAIPLCALATPT* 150789

>AC116603.1 $F Nipponbare strain, clone OSJNBb0015J03, from chromosome 10, 
AQ869312.1 70% to AC078944.1 168857-163366 same as AQ913628.1
41763 MAALLLWLSWLLLSLLSIYLLDLLAHSRRCLPPGPRPLPLIGSLHLLGDLPHRSL 41605
41604 AGLAKTYGPLMSLRLGAVTTVVASSPEVAREFLQKHDAVFATRSTPDATGDHARNSVAWL 41425
41424 PPGPRWRELRKIMATELFSTRRLDALHELRQEKVAELVDHVAGLARDGTAVDIGRVAFTT 41245
41244 SLNLVARTIFSHDLTSLDDHGASKEFQRLITDVMEAVGSPNLSDFFPALAAVDLQGWRRR 41065
41064 LSGLFARLHRLFDAEMDHRRLHGMKEKDGDFLEVLLRLAARDDDTARLDGDTLRSLFT 40891
39623 DLFTAGSDTSSSTVEWAMAELLQNPISMAKLCDELRRVVGSRRRIEESEIGQLPYLQAVI 39444
39443 KETFRLHSPAPLLLPRQATRTIQIMGYTIPKGTRVLINVWAMGRDEDIWPEAGKFIPERF 39264
39263 LERTIDYKGGDLELIPFGAGRRICPGMPLAVRMVHVLLASLLIHFKWRLPAEVEGNRIDM 39084
39083 TEKFGVTLAKANHLCAMAAPT* 39018

>AC116603.1 (partial) Nipponbare strain, clone OSJNBb0015J03, from chromosome 10 
12419 ALFLWLSWLVLSLLSIYLLDLLAHSRRRLPPGPRPLPLIGSLHLLGDQPHRSL 12261
12260 AGLAKTYGPLMSLRLGAVTTVVVSSPDVAREFLQKHDAVFATRSAPDAAGDHTRNSVPWL 12081
12080 PPGPRWRELRKIMATELLATHRLDALHELRQEKVSELVDHVARLARDGAAVDVGRVAFTT 11901
11900 SLNLLSRTIFSRDLTSLDDRGASKEFQQVVTDIMGAAGSPNLSDFFPALAAADLQGWRRR 11721
11720 LAGLFERLHRVFDAEIEHRRRVAGEEHGKVKDDFLRVLLRLAARDDDTAGLDDDTLRS 11547
11546 VFT 11538

>AC116603.1 $F Nipponbare strain, clone OSJNBb0015J03, from chromosome 10 
9109 MACALSLLSVYLLDLLAQSRRRLPPGPHPLPLIGSLHLLGDQPHRSLAGLAKTYGPLM 8936
8935 SLRLGAVTTVVVSSPDVAREFLQKHDAVFATRSAPDASGDHARNSVALLPNSPRWRELRK 8756
8755 IMATELFSTSRLDALHELRQEKVVELVDHVARLAREGAAVDVGRVAFTTSLNLLSHTIFS 8576
8575 RDLTSLDDHGASKEFQQVVTDIMGAAGSPNLSDFFPALAAADLQGWRRRLAGLFERLRRV 8396
8395 FDAEIEHRRRVVGKEHGKVKDDFLRVLLRLAARDDDTAGLHDDALQSIFT 8246
6711 DLFAAGSDTSSSTVEWAMAELLRNPLPMAKACDELQRVIGSTRRIEESDIGRLPYLQ 6541
6540 AVIKETFRLHPPVPFLLPRQATTTIQILGYTIPKGAKVFINVWAMGRDKDIWPEAEKFMP 6361
6360 ERFLERATDFKGADFELIPFGAGRRICPGLPLAVRMVHVVLASLLINFKWRLPVKVERDG 6181
6180 VNMTEKFGVTLAKAIPLCAMATST* 6106

>aaaa01019517.1 (indica cultivar-group) ortholog to AQ869312.1
47% to 76C2 78% to AC078944.5 
4547 ALLPWLPWLLAALLSVYLLDLLAHSRRRLPPGPRPLPLIGSLHLLGDRPHRSL  (fs)
4373 PHHSLAGLAKKYGPLMSLRLGAVTTVVASSPEVAREFLQKHDAVFATRSTPDATGD 4206
4205 HARNSVAWLPPGPRWRELRKIMATELFSTRRLDALHELRQEKVAELVDHVARLARDGTAV 4026
4025 DIGRVAFTTSLNLVARTIFSHDLTSLDDHGASKEFQRLITDVMEAVGSPNLSDFFPALAA 3846
3845 VDLQGWRRRLSGLFARLHRLFDAEMDHRRLHGMKEKDGDFLEVLLRLAARDDDTARLDGD 3666
3665 TLRSLFT (0?) 3645
2339 DLFTAGSDTSSSTVEWAMAELLQNPISMAKLCDELRRVVGSRRRIEESEIGQLPYLQAVI 2160
2159 KETFRLHSPAPLLLPRQATRTIQIMGYTIPKGTRVLINVWAMGRDEDIWPEAGKFMPERF 1980
1979 LERTIDYKGGDLELIPFGAGRRICPGMPLAVRMVHVLLASLLIHFKWRLPAEVEGNRIDM 1800
1799 TEKFGVTLAKANHLCAMAAPT* 1734

>AP004183.1 $P chr 8 clone OJ12