530 indica rice P450 sequences
August 12, 2002 D. Nelson

>aaaa01000117.1 (indica cultivar-group) orth of AC092557.2
3669 PGTMGWPVVGETFSFISGFSSPAGILSFMRDRQK
3451 RFGKVFKTYVLGRMTVFMTGREAAKILLSGKDGVVSLNLFYTGKQVLGPTSLLTTNGDEH 3272
3271 KKLRRLIGEPLSIDALKKHFDFINDLAVQTLDTWLDRRVLVLEEASSVII 3122
3026 ANMLISLEPEGEEQEKFRANFKIISSSFASLPLKIPGTAFHRGLK 2892
2796 ARNRMYAMLDSVIARRRDGGEVRNDFLQTLLRKHAKDGTAADEDDGGGGGDRDADKLT 2620
2619 DAQLKDNILTLLVAGHDTTTAGLTWLIKFLGENPEALQKL 2500

>aaaa01000147.1 (indica cultivar-group) orth of AC087182.8 $F chr 10 100% 
86B like
MMALPEVQTVELLVAVSIFVAIHSLRQRRSQGLPSWPLVGMLPSLLLGLRGDMYEWLTGV 25899
25898 LASRGGTFTFHGPWLTNLHCVVTSDPRNLEHMLKTKFGSFPKGPYFRDTVRDLLG 25734
25733 DGIFGADDEVWRRQRKAASLEFHSAEFRALTASSLVELVHRRLLRVLGDAEEAGDAVDLQ 25554
25553 DVLLRLTFDNVCMIAFGVDP 25494
16855 VVEDEVFPDGTVLKKGTKVIYAMYTMGRMESIWGEDCREYKPERWLRDGRFMGESAY 16685
16684 KFTAFNGGPRLCLGKDFAYYQMKFAAASILRRYHVRVVDGHPVAPKMALTMYMKHGLKVK 16505
16504 LTKR 16493

>aaaa01000152.1 (indica cultivar-group) CYP727A1 orth of AP003765.1 $F 98% 
2748 MASPCEHHVPYTLLGALLSGGGPHAAACGGAAFLRDYAERGTNALLWAALLAVTWLIVLR 2927
2928 LAALLRLWALGARLPGPPAFPADPGLAAGDITG 3026
4982 YLSKLHGSYGPVVRLWLGPSQLLVSVKDSRVIKELLTKAEDKLPLTGKTYNLACGKLG 5161
5162 LFISSFEK
5342 VKSRRESLKSFLDEKLSVGASGSSFKIIQIVLDRIDSIMARDFLDCRYFSQHMAFNIVG 5521
5522 SALFGDAFFDWSDASAYEELMMTVAKDACFWASYAVPPFWKPDYRRYRTLCAQLKILTQG 5701
5702 IVAKSRNQNGVLSLIDLSSSQRSERMIKDPCRGVSLLDGVISSRCLNEAAEGPLSSEEI 5878
5879 CGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQ 5986
6378 LHSEIVSGHSESSELKIDDVLRMKFLLATVCESARLLPAGPLLQRCSLQQG
6877 DVNLNSSITIPAGAILVIPLHLVQMEASTWGNDACQFNPNRFLKKDINFE 7038
7130 EILAAAHKGSNGINLFTDECDKTESFLPFGSGSRACVGQKFAVLGIAMLIASLLRSYE 7309
7543 VQPHPALSKEMESLVDSNSLHHIPNPKIILKKRSI 7650

>aaaa01000178.1 $FI (indica cultivar-group) 
9077 MAMAAAVLVAIALPVSLALLLVAKAVWVTVSCYYLTPARIRRVLASQGVRGPPPRPLVGN 8898
8897 LRDVSALVAESTAADMASLSHDIVARLLPHYVLWSNTY (1?)
8701 GRRFVYWYGSEPRVCVTEAGMVRELLSSRHAHVTGKSWLQRQGAKHFIGRGLLMANGATW 8522
8521 SHQRHVVAPAFMADRLK (0)
     GRVGHMVECTRQTVR 8342
8341 ALREAVARSGNEVEIGAHMARLAGDVIARTEFDTSYETGKRIFLLIEELQRLTARSSRYL 8162
8161 WVPGSQ 8144
7592 YFPSKYRREIKRLNGELERLLKESIDRSREIADEGRTPSASPCGRGLLGMLLAEMEKK 7419
7418 EAGGNGGGEVGYDAQMMIDECKTFFFAGHETSALLLTWAIMLLATHPAWQDKARAEVAAV 7239
7238 CGGGAPSPDSLPKLAVLQMVINETLRLYPPATLLPRMAFEDIELGGGALRVPSGASVWIP 7059
7058 VLAIHHDEGAWGRDAHEFRPDRFAPGRPRPPAGAFLPFAAGPRNCVGQAYAMVEAKVALA 6879
6878 MLLSSFRFAISDEYRHAPVNVLTLRPRHGVPVRLLPLPPPRP 6753

>aaaa01000236.1 (indica cultivar-group) orth of AL606687.1 $F chr 4 100%
34409 VAAVAAYMAWFWRMSRGLSGPRVWPVVGSLPGLVRHAEDMHEWIAANLRRTRGTYQTCIF 34588
34589 AVPGLARRGGLVTVTCDPRNLEHVLKSRFDNYPKGPFWHGVFGDLLGDGIFNSDGETWVA 34768
34769 QRKTAALEFTTRTLRTAMSRWVSRSIHSRLLPILSDAAAAGGGGGGATVDLQDLLLRLTF 34948
34949 DNICGLAFGKDPETLARGLPENDFASAFDRATEATLNRFIFPECVWRFKKWMGLGMETTL 35128
35129 ARSVQHVDRW 35158
9099 SVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSAGRMKTVWGDDCLEFRPERWLSADGTK 9278
9279 FEPHDSFRFVAFNAGPRICLGKDLAYLQMRNIAGSVLLRHRLAVAPGHRVEQKMSLTLF 9455
9456 MKHGLRMEVRPR 9491

>aaaa01000238.1a $FI (indica cultivar-group) orth of AP003909.1f 2 diffs
3340 VLIMIIILLLLVLLHYYLSASTRRSSAASKSNDDVLPPSPPRLPVIGHMHLVGSNPHVSL 3161
3160 RDLAEKHAADGFMLLQLGQVRNLVVSSPRAAEAVLRAHDHVFASRPRSAIADILAYGSSN 2981
2980 ISFSPYGDYWRKARKLVAAHLLSPKKVQSLRRGREEEVGIAVAKLHEAAAAGAAVDMREL 2801
2800 LGSFTNDVLCRAVCGKSSFRREGRNKLFMELAAGNADQYAGFNLEDYFPSLAKVDLLRRV 2621
2620 VSADTKKLKEKWDSVLGDIVSEHEKKSSLRRDDQVQMDDDRDDDQEEQESDFVDILLDRQ 2441
2440 QEYNLTRHNIHAILMX 2396
2209 MFAAGTDTSYIALEFAMSELIRKPHLMTKLQDEVRKNTTTKMVSEDDLNNMPYLKAVV 2036
2035 KETLRLHPPVPLLLPRLSMAQCNANGYTIPANTRVIINVWALGRDARCWENSEEFMPERF 1856
1855 MDSGDTIDNVDFKGTDFQFLPFGAGRRICPGMNFGMASVELMLSNLMYCFDWELPVGMDK 1676
1675 DDVDMTDQFALTMARKEKLYLIP 1607
Duplicated end of exon 1
ESDFVDILLDHQQEYNLTRHNIHAILMLITYTLL 945

>aaaa01000238.1b $FI (indica cultivar-group) AP003909.1e 100%
14489 LLPLALLFYFARAAISSRDSKTRELILSKLPSPPFKLPVIGHMHLIGPLPYVSLRDLAA 14313
14312 KHGRDGLMLVRLGSVPTLVVSSPRAAEAVLRTHDLAFASRPRSMVTDIIMYGALDSCFAP 14133
14132 YSDHFRSVKKVVTVHLLNSKRVQAYRHVREEEVRLVMARLRGAAAAAAAVDLSQTLQFFA 13953
13952 NDLICRAVSGKFLCEQGRNKVFRDLMEANSNLLGGFNLEAYFPGLARMPLISKLICARAI 13773
13772 RIRRRWDQLLDMLIDDHVASARDRAKNDDDDFIHVLLSLQDEYGFTRDHIKAISIX 13608
13134 MFEAGTDTSHLVLEYAMVELTRKPHILTKLQDEVRRITPKGQHMVTEDDIVGMVYLKAVI 12955
12954 KETLRLHAPGGFTIPHLAREDCNVDGYMIPAGTRVLINLWALSRDANYWDKPDEFLPERF 12775
12774 MDGSNKNTDFKGQDFQFLPFGSGRRMCPGIHSGKVTLEIMLANLVYCFNWKLPSGMKKE 12598
12597 DIDMTDVFGLAIHRKEKLFLVPQI 12526

>aaaa01000238.1c $FI (indica cultivar-group) AP003909.1d 99%
25643 LLLPVALLLLLLRFARATTLAGDRNSELLLSKLPSPPLRLPVIGHMHLVGSLPHVSLRD 25467
25466 LAAKHGRDGLMLVHLGSVPTLVVSSPRAAEAVLRTHDLAFASRPRAMVPDIISYGATDSC 25287
25286 YGPYGDHFRKVRKAVTVHLLNSHKVQAYRPAREEEVRLVIAKLRGAAAMAGAPVDMTELL 25107
25106 HSFANDLICRAVSGKFFREEGRNKLFRELIDTNASLLGGFNLEDYFPSLARTKLLSKVIC 24927
24926 VRAMRVRRRWDQLLDKLIDDHATRLVRRHDHDQQQDSDFIDILLYHQEEYGFTRDNIKAI 24747
24746 LVX 24741
24592 MFEAGTDTSYLVLESAMVELMRKPHLLAKLKDEVRRVIPKGQEIVNEDNIVDMVYLKAVI 24413
24412 KETLRLHPPAPLYIPHLSREDCSISGYMIPTGIRVFVNAWALGRDAKFWDMPDEFLPERF 24233
24232 MDSNIDFKGHDFHYLPFGSG*RMCPGIHSATVTLEIMLANLMYCFNWKLPAGVKEEDI 24059
24058 DMTEVFGLTVHRKEKLFLVP 23999

>aaaa01000238.1d $FI (indica cultivar-group) AP003909.1f 99%
30181 VLIMIIILLLLVLLHYYLSASTRRSSAASKSNDDVLPPSPPRLPVIGHMHLVGSNPHVSL 30360
30361 RDLAEKHAADGFMLLQLGQVRNLVVSSPRAAEAVLRAHDHVFASRPRSAIADILAYGSSN 30540
30541 ISFSPYGDYWRKARKLVAAHLLSPKKVQSLRRGREEEVGIAVAKLHEAAAAGAAVDMREL 30720
30721 LGSFTNDVLCRAVCGKSSFRREGRNKLFMELAAGNADQYAGFNLEDYFPSLAKVDLLRRV 30900
30901 VSADTKKLKEKWDSVLGDIVSEHEKKSSLRRDDQVQMDDDRDDDQEEQESDFVDILLDRQ 31080
31081 QEYNLTRHNIHAILMX 31137
31312 MFAAGTDTSYIALEFAMSELIRKPHLMTKLQDEVRKNTTTKMVSEDDLNNMPYLKAVV 31485
31486 KETLRLHPPVPLLLPRLSMAQCNANGYTIPANTRVIINVWALGRDARCWENSEEFMPERF 31665
31666 MDSGDTIDNVDFKGTDFQFLPFGAGRRICPGMNFGMASVELMLSNLMYCFDWELPVGMDK 31845
31846 DDVDMTDQFALTMARKEKLYLIP 31914
Duplicated end of exon 1
ESDFVDILLDHQQEYNLTRHNIHAILMLITYTLL 32576

>aaaa01000238.1e $FI (indica cultivar-group) AP003909.1c 99%
40499 PSPVAPQPTMASYYTLLLALLCPLLLLLIKLCRAKTRDDELFDKLPSPPGRLPVIGHL 40326
40325 HLIGSLPYVSFRELAIKHGPDLMLLRLGTVPTLVVSSARAAQAILRTNDHVFASRTYSAV 40146
40145 TDILFYGSSDVAFSPYGEYWRQVKKIATTHLLTNKKVRSYSRARQQEVRLVMARINEAAV 39966
39965 ARTTVDLSELLNWFTNDIVCHAVSGKFFREEGRNQMFWELIQANSLLLSGFNLEDYFPNL 39786
39785 ARVTTVRRLLCAKAHNVNKRWDQLLDKLIDDHATKRSSSVLDLDNEESDFIDVLLSIQHE 39606
39605 YGLTRDNVKAILVIMFEGGTDTAYIELEYAMAELIRKPQLMAKLQAEVRSVVPRGQEIVT 39426
39425 EEQLGRMPYLKAVIKETLRLHLAGPLLVPHLSIAECDIEGYTIPSGTRVFVNAWALSRDP 39246
39245 SFWENAEEFIPERFLNSIAPDYNGNNFHFLPFGSGRRICPGINFAIATIEIMLANLVYRF 39066
39065 DWEIPADQAAKGGIDMTEAFGLTVHRKEKLLLVPRL 38958

>aaaa01000238.1f $FI (indica cultivar-group) AP003909.1a 99%
44400 MAEMLDGLRHDEQASLHAPQKASTMPTMSCSDLLLAMMCPLILLLIIFRCYAYATRSGGM 44221
44220 LSRVPSPPGRLPVIGHMHLISSLPHKSLRDLATKHGPDLMLLHLGAVPTLVVSSARTAQA 44041
44040 ILRTHDRVFASRPYNTIADILLYGATDVAFSPYGDYWRQIKKIVTMNLLTIKKVHSYGQT 43861
43860 RQQEVRLVMAKIVEEAATHMAIDLTELLSCYSNNMVCHAVSGKFFREEGRNQLFKELIEI 43681
43680 NSSLLGGFNLEDYFPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDN 43501
43500 NDEESDFIDVLLSIQQEYGLTKDNIKANLVVMFEAGTDTSYIELEYAMAELIQKPQLMAK 43321
43320 LQAEVRGVVPKGQEVVTEEQLGRMPYLKAVIKETLRLHPAAPLLVPHVSMVDCNVEGYTI 43141
43140 PSGTRVIVNAWAIARDPSYWENAEEFIPERFLGNTMAGYNGNNFNFLPFGTGRRICPGMN 42961
42960 FAIAAIEVMLASLVYRFDWKLPIDQAANGGIDMTETFGITIHLKEKLLLVPHLP 42799

>aaaa01000238.1g $FI (indica cultivar-group) AP003909.1b 89% with some shifts
46070 MAQMLGALLLFQDSQMSTMTRMSYSLLLPILCPLILLLLFRCYAYATRSGGL 46225
46226 LDKLPSPPGRLPLIGHMHLIGSFPHMSLRDLATKHGPDLMLLHLGTVPTLVVSSSRMAQV 46405
46406 ILRTHDRVFASRQQSAI 46456 gap
46485 YGDYWRQIKKIVTTNLLTIQEDPLL*PDRQQECVCNAKI*EATTHMAV 46628
49427 LYAKAYDVKKRWDQLLDKLIDDHSSKHRSSLLDNNEX 49320
49320 ESDFIDVLLSIQQEYGLTKDNIKANLAIMFEAGTDTSFIELEYAMAELMQKPQMIAKLQA 49141
49140 EVRGVVSKGQEIVTEEHLGRMPYLKAVIKETLRLHPAAPLLAPHVSVVDCNVEGYTTPSG 48961
48960 TRVIVNAWAIARQGP*LLGKC*GVQRFLSNTMADYNGNNFNFLPFWTGRRICPGINFA 48787
48786 ITTIEIMLASLVYRFDWKLFTSRIDMTETFGATIHLKEKLFLVPHLP 48646

>aaaa01000245.1 $FI (indica cultivar-group) 
31056 MAVVAVAVVIALLAAFLTPLAVYLARRASPPPPPRRNLPPGSLGLPLIGQSLSLLRAMRR 30877
30876 NTADRWLQDRIDRYGPVSKLSLFGAPTVLVAGPAANKVVFHHEALAPKQPRSLAAIIGRR 30697
30696 NILELVGDDHRRVRGAILQFLRPDMVRRYVGKIDSEVRRHLAARWAGRRTVAVFPLMKTL 30517
30516 AFDVIATLLFGLDRGAIREQLADAFDGMHEGLWTVPVDLPFTPFRRGLMASARARRLVEA 30337
30336 TVREKAAKLEHGESSPSDDLISCLLSLRDGGRQLLTEEEIVDNSVLALVAGHDTSAVLLT 30157
30156 FMLRHLANDPATLAAM
30022 HEEIARGKRDGEALTWEDVAKMKLSWRVAQETLRMVPPVLGSFRRAPVDVEFEGYTIPRG 29843
29842 WQIFWSPSVTHMDPAIFHEPTKFEPSRFDGTAAAAAYSFVPFGGGPRICPGMELARVETL 29663
29662 VTAHYLVRHFRWKLCLGEEKNTFLRDPMPTPHDGLPVELDHIAPLC 29525

>aaaa01000275.1 (indica cultivar-group) orth AC087550.2 $F chr 10, 100%
42347 LTVLSVSVLIAVVISKLVSYATKPRLNLPPGPWKLPVIGSLHHLVGSHAIHRSMRALAE 42171
42170 KHGRHHLMQISLGEVFAVVVSSPEAAEEILR 42078

>aaaa01000381.1a $FI (indica cultivar-group) 
67% to AP003850.1 chromosome 7 36% to 716A2
18271 MEFSLVVALIAVASSCVFVHFLARGATKKRRSPAAKKLPPGSLGLPVIGQSLGLLRA 18101
18100 MRSNSGERWVRRRIDRYGAVSKLSLFGKPTVLVAGAAANRFVFFSGALALQQPR 17939
17938 SVQRILGDRSILDLVGADHRRVRGALSEFLRPEMLRMYVGKIDGEARRHVAGCWSG 17771
17770 RAAVTVMPLMKRLTFDIIASLLFGLGPGAAARDALAGDFERV 17645
17644 MGGMWAVPVDLPFTAFRRSLRAAARARRLLAGITRERKAALERGAATRSSDLIACLLSLT 17465
17464 DDRGGAPLLSEEEIVDTAMVALVAGHDTSSILMTFMVRHLANDPDTLAAM (0)
      HEEIARSKRDGEALTWEDLTRMKLTWRVAQETLRMVPPV 17105
17104 FGNFRRALEDIELDGYVIPKGWQVFWVASVTHMDAAIFHDPDKFLPSRFDSQSSSPSTA 16928
16927 KAAPPCSYVAFGGGPRICPGIEFARIETLVMMHHLVRKFRWKLCCKEDT 16781
16780 FARDPMPTPLHGLPIEIEPRISP* 16709

>aaaa01000381.1b $FI (indica cultivar-group) 
22925 MSMDSSMPFALLLALFIPILLHLVTRHKYSSYNLPPGSLGFPLIGQSISLLRALRSNTDYQWYQDR 23122
23123 IKKYGPVSKMSVFGSPTVLMAGPASNHFVFSNQDLIFTQTKAINVLIGRSIMTLSGDEL 23299
23300 KQVRSALQGYLSPEMVTKYVWKMDEEVRRHIDLNWVGHKTIK
23553 VAPLAKRLTFNIISSVMFGQGAAPFREALAIDFEKVVRAALSIPVNIPFTKFNKGLSASR 23732
23733 RIRKLLRQIAHEREAAFQQGYCSSADDFFTYMLALRSEGKHSLTVEDIVDNAILLLIAGY 23912
23913 EMSSVLITFLIRQLANEPDIL 23975 gc boundary
24077 EQEEIARNKGPNKPLTWNDVSRMKYTWKVAMETLRTVPALLGSFRTATKDIEYRGYHIP 24253
24254 KGWQ 24265
24577 IFTAQIVTHLDAIFFDEPSKFDPSRFDNLSSIPPYCFVPFGGGPRMCPGNEFARTETSV 24753
24754 AMHYLVRQLRWKLCCKEEGYRKDATPMPVLGLPIELETRSAP* 24882

>aaaa01000393.1 $FI (indica cultivar-group) 89% to AP005114.1b
9756 MEDKLILALCLSALFVVVLSKLVSSAVKPRLNLPPGPWTLPLIGSLHHLAMTKSPQTHRSLRALS 9562
9561 EKHGPIMQLWMGEVPAVVVSSPAVAEEVLKNQDLRFADRHLTATTEEIFFGGRDVIFGP 9385
9384 YGERWRHLRKICMQELLTAARVRSFRGVREGEVARLVRELAASAAGAGAGAVGAAAGVNL 9205
9204 NERISKLANDIVMVSSVGGRCSHRDEFMEALEVAKKQITWLSVADLFPSSKLARMVAVAP 9025
9024 RKGLASRKRMELVIRRIIQERKDQLMDDSAAGAGEAAAGKDCFLDVLLRLQKEGGTPVP 8848
8847 VTDEIIVVLLF (0) 88315
4681 DMISGASETSPTVLIWTLAELMRNPRIMAKAQAEVRQAVAGKTTITEDDIVG 4526
4525 LSYLKMVIKETLRLHPPAPLLNPRKCRETSQVMGYDIPKGTSVFVNMWAICRDSRYWEDP 4346
4345 EEYKPERFENNSVDYKGNNFEFLPFGSGRRICPGINLGVANLELPLASLLYHFDWKLPNG 4166
4165 MAPKDLDMHETSGMVAAKLITLNICPITHIAPSSA* 4058

>aaaa01000394.1 (indica cultivar-group) 
13114 MDMDSSPSTQDCGGWLLYVSLAAKCGGDPCRVVGFVAVAVVAFAVTSLLHWLSPGGPAWG 13293
13294 RYWWNRRGGLGIAAAIPGPRGLPVLGSMSLMAGLAHRKLAAAAGGSPARRRLMALSLGET 13473
13474 RVVVTADPGVARELLASAAFADRPVKESAYGMLFHRAIGFAPYGTYWRALRRVASTHLFS 13653
13654 PRQVSASAAQRAVIARQMVEAMRSAAAAAAGGGVAARPFLKRASLHNVMWSVFGRKYELA 13833
13834 APESEETAELRSMVDEGYDLLGQLNWSDHLPWLAPFDLQKTRSRCSSLVPRVNRFVTRII 14013
14014 DEHRARLSLAVDA 14052 small 16aa seq gap
14189 LHGGDXLSDADXVAVLWVCT 14212
14307 EMIFRGTDTVAVLIEWVAARLVLHQDVQARVHDELDRVVGSDRAVTESDASKLVYLQ 14477
14478 AVIKEVLRLHPPGPLLSWARLATSDVHVGGFLIPSGTTAMVNMWAITHDPAVWPDPNEFK 14657
14658 PERFVAGPSSDQAAEFPIMGSDLRLAPFGSGRRSCPGKSLAIATVGFWVATLLHEFDWLP 14837
14838 LSDKSRGVDLSEVLKLSCEMATPLEARLRPRRKV 14939

>aaaa01000436.1a (indica cultivar-group) ortholog of AQ576451
998  EEHTTILNKRGSLNSGFTWEEYKSLMFTSQ (0) 1087
1188 VVNEITRISNVAPGIFRRTLADVKVN 1265 (1)
1367 GYTIPAGWLVMISPMAVHLNPTLFEDPLEFNPWRWT (0) 1474
1595 DKTKQSELLRNYMPFGGGIRLCLGAEFSKLFIAIFIHVLVTEYR 1726 (2)
1814 WKEIKGGDVLRISEVIFPQGYHIQLIPHT* 1903

>aaaa01000436.1b (indica cultivar-group) 75% to AL607001.1 gene 2
24089 RYGPIFKTSLVGQPLVISLDPEVNRFVFQQEGKLFRSWYPETTNTIFGKKSLITYSGAVH 24268
24269 KFVRSFVSKLFGPANLKELLLPELERAVRESFATWAMNPSIEVKDGISN 24415
24666 MIFDLVAKKLIGFKPTKSRELRKNFQEFFHGMVSFPIYFPGTSFYRCMQ 24812
24970 GRRNVQKTLTDLLKERLSAPGEKYNDLIDQIIEELQSENPVIDVNFAIDVLSA 25128
25129 LLFASFAT 25152

>aaaa01000478.1a (indica cultivar-group) ortholog of AL607001.1 gene 2
31320 YAALCGVTLIIGWLAHWIYKWMNPPCIGRLPPGSMGFPIIGETFQFFRASPSIDMPSYYK 31141
31140 QRLERYGPLFKTS 30961
30960 LVGRPVIISLDPEVNRFIFQQEGKLFQSWYPETAINIFGKKSLTTYNGTIHKFIRGVAAK 30781
30780 LFGLENLKESLLPELENSMRESFASWTGKPSVEVQDGVSD
      MIFDLVAKKLIGLDVTNSRELRKNFQD 30367
30366 FFQGMVSFPIYFPGTSFYRSMQ
      GRRNVRNTLTDIMKERLSAPGKKYGDLVDLIVEELQSEKPM 28686
28685 IDENFAIDALAALLFTSFATLSSTLTVAFKYLTDNPKVVEELK
      EEHGTILKKREGVNSGFTWEEYRSLKFSTQ
      VMNEITRISNVTPGVFRKTLTDVQ
28087 YSGYTIPSGWLVMISPMAVHLNPKLFEDPLKFDPWRW 27977

>aaaa01000478.1b (indica cultivar-group) ortholog of AL607001.1 gene 1
39957 LVLLLRHQARRWRNPRCGGQLPPGSMGLPLVGETFQFFSSDASLDIPPFIRHRLA
39713 RYGPIFKTSLVGHPVVVSADEELNHMVFQQEGQLFQSWYPDSFVEILGKDNVGEQQGAMF 39534
39533 RYLKNMVLRYFGPESLKEGIIRDVERAVSSSLCTWSTLPAVELKEAVST
      MVFDLAASKLLGLEPSRSKILRKSFFDFVRGLISFPLYLPGTAYYSCMQ
39058 QGRRRAMVVLEQVLEERKQSTGLQRGGEAQQHGDFLDYVIQEITKEKPVMTEKMALDLMF 38879
38878 VLLFASFHTTSLALTLAVKLLADHPLVLEELT 38783
      VEHETILKDREAGSELDRITWKEYKSMAFTSQ 38589
35958 YTIPAGWGVMVCPPAVHLNPYIYPDPLTFIP 35866
32561 EINRGSKHFMAFGGGLRFCVGADFSKLQLAIFLHFLVTKYR 32683

>aaaa01000493.1a (indica cultivar-group) 3 pseudogene fragments
100% to AP005254.1c with a deletion in the Ihelix
3400 ADASTKKHGDFLDSLLELMSAGKIACDDVTTVMFDAFGA 3516 frameshift
3515 LLRNPSIMAKVRAEMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAPILLPHRA 3688
3689 AEDGVEIGGYAVPKGSTVIFNVWTIMRDPAAWERPEEFMPERFLQRAEVDFRGKDFEFI 3865
3866 PFGAGRRLCPGLPMTERVVPFILASLLHAFEWRLPVGVAAETLDLSEKFTTVNVLVTPLK 4045
4046 AIPILAS 4066

>aaaa01000493.1b (indica cultivar-group) 3 pseudogene fragments
1 aa diff with AP005254.1d but shorter
9051 EKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLD 8941 frameshift
8939 SLLDLMSAGKIARDDVTSIMFDLFGAGTDTIAITVEWAMAELLRNPSVMTKARAEMNHAL 8760
8759 AGKKTIEENDVEKLPYLQAVLREAMRLHPAAPILVPHRAEEDGAEIGGYAVPKGSTVIFN 8580
8579 VWAIMRDPAAWERPEEFMPERFMDMAEEVDFRGKDYKFIPFGAGRRLCPGLLMAERVVPF 8400
8399 ILASLLHSFEWRLPGGMTAESLDLSEKFTTVNVLVTPLKAIPILASKNENIRE 8241

>aaaa01000493.1c (indica cultivar-group) 3 pseudogene fragments
100% to AP005254.1d but shorter
26182 LRRLDLQGWRRWAEKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGK 26361
26362 IARDDVTSIMFDLFGAGTDTIAITVEWAMAELLRNPSVMTKARAEMNHALAGKKTIEEND 26541
26542 VEKLPYLQAVLREAMRLHPAAPILVPHRAEEDGAEI 26649

>aaaa01000559.1 $FI (indica cultivar-group) 98% to AP003434.1a 
22050 MELSSSLAAVLHSPLFLLAALLLLPVFTLLSFSSAKKPGDGGGRRLPLPPSPRGVPFLGH 21871
21870 LPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSAAAAQEAMRARDAAFASRARVSM 21691
21690 AERLIYGRDMVFAPYGEFWRQARRVSVLHLLSPRRIASFRGVREQEVAALLDRVRRRCGV 21511
21510 RGGGETVNLSDMLMSYANGVISRAAFGDGAYGLDGDEGGGKLRELFANFEALLGTATVGE 21331
21330 FVPWLAWVDKLMGLDAKAARISAELDGLLERVIADHRERRRLSQPDGGDGDGDGDENVDH 21151
21150 RDFVDVLLDVSEVEEGAGAGEVLLFDAVAIKAIIL 21046
20444 DMIAAATDTTFTTLEWAMAELINHPPVMRKLQCEIRAAVGVPGASGGAEVTEDHLGELRL 20265
20264 LRAVVKETLRLHAPVPLLVPRETVEDTELLGYRVPARTRVIINVWAIGRPXAAWGDRAEE 20085
20084 FVPERWLDGGGGGEAVEYAAQLGQDFRFVPFGAGRRGCPGAGFAAPSIELALTNLL 19917
      YHFDWELPPHADGAAAATAARLDMGELFGLSMRMKTTLNLVAKPWSSDV 19769

>aaaa01000575.1 $FI (indica cultivar-group) 74% to AP003523.1
31724 MDMEMGKLLHRPWKWSLNSPLL
31558 LLLIVPVMIHVQLKLRRRRKNAAAGTRLPPGPWRLPVIGSLHHLAMNPKAVHRALADLAR 31379
31378 RCGGGGGVMYLRLGELPVVVASSRDAAREVLRTHDAAFATRAMSVTVRDSIGDTVGILF 31202
31201 SPYGERWRRLRGICSLELLNARRVRSFRPIREEQVARLVGAIAAAAAAPGGDQPPPVNVS 31022
31021 WQIAGALTDLTLRAIMGECGFRWREEFLETLGEAQRKASRFGVADLFPSSRLLRAVGSTA 30842
30841 VRDVRALNAKLFELVDRAIEQHREAAATTAAGGDHDDGGDDDARDDNECLLNTLMRIQKE 30662
30661 GGGTLSMSTVKAVIL (0) 30617
28748 DMFAGGSETTSTILEWAMSELVKNPQVMQKAQAQIRLALQGRSRITEDDLINLSY 28584
28583 PKNIIKETLRLHPVAPLLGXKECQESCKILGYNIPKGSIMLVNVWAIGRDHRYWDDAEVF 28404
28403 LPERFEEITVDFGGTNYEFIPFGGGRRICPGITFAHATLEWALTALLYHFDWHLPPSVTP 28224
28223 DGLDMEEEFGMNVRRKRDLHLHPVIHVGVEKGIMS* 28116

>aaaa01000680.1a (indica cultivar-group) 100% to AP003735.2b Cterm
16582 VHYLHAAISEAMRLYPPVPIDSRVAVAADALPDGTAVRAGWFADYSAYAMGRMPQLWGED 16403
16402 CREFRPERWLSDGGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFA 16235
16234 VEPVQAPASMETPPACEVTTTLKMKGGLLVRIRKR 16130

>aaaa01000680.1b (indica cultivar-group) 99% to AP003735.2a
30994 MYMQMDSSYLHLVLPAAAAAVVVAVVLLLSLWRRCQTTSNHRPQANPILGNLVAFLANGH 31173
31174 RFLDWSTGLLAAAPASTMQVHGPLGLGYCGVATASPDAVEHMLRASFHNYVDKGDRVRDA 31353
31354 FADLLGDGLFLANGRLWRLQRKLAASSFSPRLLRLFAGRVVLDQLRRRLLLFFDAAADAR 31533
31534 RVFDLQDVLKRFAFDNICSVAFGVDRDDSSPSSSSPSRLEAGGDGRDDAFFAAFDDAIDI 31713
31714 SFGRILHPTTLAWKAMKLLDVG
31781 RLRQAIGVVDEYVTAIMESKRRCSDSEEESDLLSRFTAAMMEEDGGNELGAMFDSPEAKR 31960
31961 RFLRDTVKTFVLAGKDTTSSALTWLFWFLAANPECERRVYEEVTALRGDTAGDERDDGYE 32140
32141 DLKRMHYLHAAITETMRLYPPVPLASRVAA 32230
      DVLPDGTVVRAGWFADYSSYAMGRMPQLWERDCGEFR 32340
32341 PERWLDGGGGGGRFVAVDAARYPVFHAGPRSCLGKEMAYVQMKAVAAAVVRRFSVEVVP 32517
32518 AAAANAPPSPPPHETAVTLRMKGGLRVLLTRRRGVLSHA 32634

>aaaa01000680.1c (indica cultivar-group) 99% to AP003735.2b
34356 YMVMDGTLAPLLLLLLLFLPALLLYLRRRPAAASRINNNHCPHPNPVLGNALPFLR 34523
34524 NRHRFLDWATDLLAAAPTSTIEVRGALGLGSGVATANPAVVDHFLRASFPNYVKGARF 34697
34698 AVPFEDLLGRGLFAADGRLWALQRKLASYSFSSRSLRRFSARVLRAHLHRRLVPLLDAVA 34877
34878 GSGEAVDLQDVLGRFGFDNICNVAFGVESSTLLEGGDRRHEAFFAAFDAA 35027
35028 VEISVARVFHPTTLVWRAMRLANVGSERRMRDAIRVIDEYVMAIVASEERLRLRRGEDER 35207
35208 EHEQHLLSRFAASMEEEGGELAAMFGSPGAKRRFLRDVVVSFVMAGKDSTSSGLTWLF 35381
35382 WLLAANPRCERRVHEEVSSSRHADPRRADAGEDGDGDGYDELRRMHYLHAAISEAMRLYP 35561
35562 PVPIDSRVAVAADALPDGTAVRAGWFADYSAYAMGRMPQLWGEDCREFRPERWLSD 35729
35730 GGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFAVEPVQAPASMETPP 35903
35904 ACEVTTTLKMKGGLLVRIRKR 35966

>aaaa01000680.1d (indica cultivar-group) 100% to AP003735.2b Cterm
36027 AISEAMRLYPPVPIDSRVAVAADALPDGTAVRAGWFADYSAYAMGRMPQLWGEDCREFRP 36206
36207 ERWLSDGGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFAVEPVQA 36374
36375 PASMETPPACEVTTTLKMKGGLLVRIRKR 36461

>aaaa01000680.1e (indica cultivar-group) 100% to AP003735.2b Cterm
36527 AISEAMRLYPPVPIDSRVAVAADALPDGTAVRAGWFADYSAYAMGRMPQLWGEDCREFRP 36706
36707 ERWLSDGGEFVAVDAARYPVFHAGPRACLGREMAYVQMKAVAAAVIRRFAVEPVQA 36874
36875 PASMETPPACEVTTTLKMKGGLLVRIRKR 36961

>aaaa01000733.1 $FI (indica cultivar-group) 99% to AC092559.2
5765 MATLLSKLLALPQQWQLLLLLLLLPIASLLLVIGRNTGGRRRRRHLRLPPGPARLPVLGN 5586
5585 LLQLGALPHRSLRDLARRHGPVMMLRLGAVPAVVVSSPEAAQEVLRTHDADCCSRPSSPG 5406
5405 PMRLSYGYKDVAFAPYDAYSRAARRLFVAELFSAPRVQAAWRARQDQ 5265
3896 VEKLIGKLTRPEPEPVELNDHIFALTDGIIGAVAFGSIYGTERFAGGGRKRFHHLLDDV 3720
3719 MDMLASFSAEDFFPNAAAARLFDHLTGLVARRERVFQQLDAFFEMVIEQHLDSDSSNAGG 3540
3539 GGGNLVGALIGLWKQGKQYGDRRFTRENVKAIIF 3438
3337 DAFIGGIGTSSVTILWAMAELMRSPRVMRKVQAEIRATVGDRDGGGMVQPDDLPRLAYLK 3158
3157 MVVKETLRLHPPATLLMPRETMRDVRIGGYEVAARTRVMVNAWAIGRDAARWEEAEVFDP 2978
2977 DRFEAKRVEFNGGHFELLPFGSGRRICPGIAMAAANVEFTLANLLHCFDWALPVGMAPEE 2798
2797 LSMEESGGLVFHRKAPLVLVPTRYIQL 2717

>aaaa01000805.1a partial (indica cultivar-group) 100% to AC087544.2 
4553 MEDKLLLLLALAVSVLVAVVISKLVSYATKPRLNLPPGPWTLPVIGSIHHLVGSHPIHRS 4374
4373 MRALAEKHGRDLMQVWLGELPAVVVSSPEAARDVLRSQDLAFADRYVSTTIAAIYLGGRD 4194
4193 LAFAPYGERWRQLRKLCTQRLLTAARVRSFRCVREEEVARLVRDLAASAAAGEAVDLTAR 4014
4013 VAELVNDVVVRCCIGGRRSRYRDEFLDALRTALDQTTWLTVADVFPSSKLARMLGTAPRK 3834
3833 ALASRKKMERILEQIIQERKQIKERSTGAGAGADDEAAAAGNECFLDVLLRLQKEGDTPI 3654
3653 PITNETMMLLLH 3618 sequence gap

>aaaa01000805.1b partial (indica cultivar-group) 100% to AC087544.2 
duplicate of first 46 aa
18349 MEDKLLLLLALAVSVLVAVVISKLVSYATKPRLNLPPGPWTLPVIG 18212

>aaaa01000831.1 extra Nterm seq
12751 MQQQVTEFASAGSDTHAERKQSELTAAEMGHELWVLW 12861

>aaaa01000843.1 $FI (indica cultivar-group) 63% to AAAA01005635.1 37% to 71B2
21357 MDELSIENHSPISMDELSFG
21297 SLCLVAMATLALALALMVVMGAHRRGGEKGATTGAKNLPPGPWNLPVTGSLHHLLGASP 21121
21120 PPHRALLRLSRRHGPLMLVRLGEVPTVIVSGSDAAMEGWVLKAHDPAFADRARSTTVDAV 20941
20940 SFGGKGIIFAPYGEHWRQARRVCLAELLSARQVRRLESIRQEEVSRLVGSIAGSSNA 20770
20769 AAVDMTRALAALTNDVIARAVFGGKCARQEEYLRELGVLTALVAGFSMADLFPSSRV 20599
20598 VRWLSRRTERRLRRSHAQMARIVGSIIEERKEKKASDDGVGAKDEDDDLLGVLLRLQEED 20419
20418 SLTSPLTAEVIGALVI (0) 20371
17791 DIFGAATDTTASTLEWVMVELMRNPRAMEKAQQEVRNTLGHEKGKLIGTDISELHYLRMV 17612
17611 IKETLRLHPSSALILRQS (fs) 17558
17558 QGNCRVMGYDIPQATPVLINTFAVARDAKYWDNAEEFKPERFENSGADIRTSTAHLGFVP 17379
17378 FGAGCRQCPGALFATTTLELILANLLYHFDWALPDGVSPESLDMSEVMGITLHRSSSLHL 17199
17198 HATLSRLGFVSHSGQ* 17151

>aaaa01000851.1 (indica cultivar-group) 84% to AC074282.1 $P
29253 LIEVKKWLNVGTEYCLRKAITDVHAFAMDIVRARHQSSSVQDRDDVLSRFAASDEHND 29080
29079 EVLRDIVLSFLIAGRETTSSGLSWFFWLLSSQPDVMACITNEVRVVRKATGT 28924
28923 CPDEPFGFD 28897
28865 DDTLPDGTLVHADWFVTYNAYAMGRLAAIWGEDCLEYRPERWLSEDG 28725

>aaaa01000893.1 (indica cultivar-group) Nterm 49% to AP003434.1
33765 MSSYVVVAAALLVFVVVVVAAIKNLGKGKLPPSPPSLPFVGHLHLVGELPH 33917
33918 RSLDALHRRYGSDGGLMFLRLGRAGALVVSTAAAAADLYRGHDLAFASRPPSHSAERLFY 34097
34098 GGRNMSFAPLGDAWRRTKKLAVAHLLSPRRARPRRRGR 34211

>aaaa01000919.1 (indica cultivar-group) orth of AC073556.1 $F 100% CYP86
4049 RNQKGPRSWPIIGATVEQLKNYHRMHDWLVEYLSKDRTVTVDMPFTSYTYI 4201
4202 ADPVNVEHVLKTNFTNYPK 4258
4344 GEVYRSYMDVLLGDGIFNADGEMWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSI 4520
4521 LSQACKAGRVVDMQ 4562
4648 ELFMRMTLDSICKVGFGVEIGTLSPDLPENSFAQAFDAANIIVTLRFIDPLWRLKK 4821
4822 FLHVGSEALLEQSMKLVDDFTYSVIRRRK 4908
5076 DILSRFIELGEAGGDEGGGSFGDDKSLRDVVLNFVIAGRDTTATTLSWFTYMAMTHPAVA 5255
5256 DKLRRELAAFEAERAREEGVALADAAGEASFAARVAQFASLLSYDAVGKLVYLHACVTET 5435
5436 LRLYPAVPQDPKGIVEDDVLPDGTKVRAGGMVTYVPYSMGRMEYNWGPDAASFRPERWLS 5615
5616 GDGGAFRNASPFKFTAFQAGPRICLGKDSAYLQMKMALAILFRFYTFDLVEDHPVKYR 5789
5790 MMTILSMAHGLKV 5828

note all six genes on AAAA01000965 are nearly identical.  They are broken
with parts of genes going in opposite directions as in b and c.

>aaaa01000965.1a $PI 94E1(P) (indica cultivar-group) 1-420 fs 421-470 (minus strand)
one fs, runs off end
1413 MDTYYYSMLFVLPPILYMSYHLTRILADKKKPTTHGLKAHPLLGHLPAFVNNSHRFLDWT 1234
1233 TELIVGSPEMRMGFWIPGMRTGIITGNPADVEHILRTNFANYPKGEHAIGMLEDFLGHGL 1054
1053 FNSDGEQWLWQRKNASYEFSNRSLRRFVVDVVQAEIADRFLPLLRRAAGDGGGDGDVVVL 874
 873 DLQEVLQRFGFDTICMVAFGHDPRCLADGGVMEDARSEFMHTFGEAQDLVVGRFFDPIEV 694
 693 SWKIKKWLNVGTERRLRKAIADVHAFAMDIVRARRQSASVNDRDDVLSRFVASDEHSDEV 514
 513 LRDIVLSFLIAGRETTASGLSWFFWLLSSRPDVAARIADEVRAVREATGTRPGEPFRFDA 334
 333 LREMHYLHAALTESMRLYPPAPIDSQSCAADDTLPDGTLLRAGWSVTYSAYAMGRLAAIS (fs) 154
 152 GEDCLEYRPERWLGDDGAFQPASPFRFTVFHAGPRMCLGKEMAYVQMKSI 3

>aaaa01000965.1b $PI 94E2(P) (indica cultivar-group) 370517 (minus strand)
15180 ALTESMRLYPPAPIDSQSCAADDTLPDGTLLRAGWSVTYSAYAMGRLAAIWGEDCLEYRP 15001
15000 ERWLGDDGAFQPASPFRFTVFHAGPRMCLGKEMAYVQMKSIVANVLEEFEVDVVKEIAGG 14821
14820 GVPEHVLSVTLRMKGGLPVKIRRKTEAY* 14734

>aaaa01000965.1c $PI 94E3(P) (indica cultivar-group) 192517 (plus strand)
15203 DTICMVAFGHDPRCLADGGVMEDARSEYMNTFGEAQDLVVGRFFDPIEVSWKIKKWLNVG 15382
15383 TEHRLRKAIAEVHAFAMDIVRTRRQSASVQDRDDVLSRFVASDEHSDEVLRDIVLSFLIA 15562
15563 GRETTASGLSWFFWFLSSRPDVAARIADEVRAVREATGTRPGEPFGFDALREMNYLHAAL 15742
15743 TESMRLYPPAPIDSQSCAADDTLPDGTLLRAGWSVTYSAYAMGRLAAIWGEDCLEYRPER 15922
15923 WLGDDGAFQPASPFRFTVFHAGPRMCLGKEMAYVQMKSIVANVLEEFEVDVVKEIAGGGV 16102
16103 PEHVLSVTLRMKGGLPVKIRRKTEAY* 16183

>aaaa01000965.1d $PI 94E4(P) (indica cultivar-group) 44% to 94B4 (new subfamily?)
one frameshift, might be a pseudogene
25108 MEFYAYSMLLILPLILYMSYHLTRTLAEK 25022 (fs)
25017 KKPTTHGLKAHPLLGHLPAFVNNSHRFLDWTTELIVGSPEMRMGFWIPGMRTGIITGNP 24841
24840 ADVEHILRTNFANYPKGEHAIGMLEDFLGHGLFNSDGEQWLWQRKNASYEFSNRSLRRFV 24661
24660 VDVVQAEIADRFLPLLRRAAGDGGGDGDVVVLDLQEVLQRFGFDTICMVAFGHDPRCLAD 24481
24480 GGVMEDARSEFMHTFGEAQDLVVXRFFDPIEVSWKIKKWLNVGTERRLRKAIADVHAFAM 24301
24300 DIVRARRQSASVNDRDDVLSRFVASDEHSDEVLRDIVLSFLIAGRETTASGLSWFFWLLS 24121
24120 SRPDVAARIADEVRAVREATGTRPGEPFRFDALREMHYLHAALTESMRLYPPAPIDSQSC 23941
23940 AADDTLPDGTLLRAGWSVTYSAYAMGRLAAIWGEDCLEYRPERWLGDDGAFQPASPFRFT 23761
23760 VFHAGPRMCLGKEMAYVQMKSIVANVLEEFEVDVVKEVAGGGVPEHVLSVTLRMKGGLPV 23581
23580 KIRRKNLFRGW* 23545

>aaaa01000965.1e $PI 94E5(P) (indica cultivar-group) 271513 plus strand
25463 VRARRQSASVNDRDDVLSRFVASDEHSDEVLRDIVLSFLIAGRETTASGLSWFFWLLSSR 25642
25643 PDVAARIADEVRAVREATGTRPGEPFRFDALREMHYLHAALTESMRLYPPAPIDSQSCAA 25822
25823 DDTLPDGTLLRAGWSVTYSAYAMGRLAAIWGEDCLEYRPERWLGDDGAFQPASPFRFTVF 26002
26003 HAGPRMCLGKEMAYVQMKSIVANVLEEFEVDVVKEVAGGGVPEHVLSVTLRMKGGLPVKI 26182
26183 RRKRVNLFRGW* 26218 

>aaaa01000965.1f $PI 94E6(P) (indica cultivar-group) 54% to AP003232.1 15517 
one fs, runs off end FS is in same place as seq 1d probably both are pseudogenes
33366 ILYMSYHLTRTLAEK (fs)
33309 KKPTTHGLKAHPLLGHLPAFVNNSHRFLDWTTELIVGSPEMRMGFWIPGMRTGIITGNP 33133
33132 ADVEHILRTNFANYPKGEHAIGMLEDFLGHGLFNSDGEQWLWQRKNASYEFSNRSLRRFV 32953
32952 VDVVQAEIADRFLPLLRRAAGDGGGDGDVVVLDLQEVLQRFGFDTICMVAFGHDPRCLAD 32773
32772 GGVMEDARSEFMHTFGEAQDLVVXRFFDPIEVSWKIKKWLNVGTERRLRKAIA
      DVHAFAMDIVRARRQSASVNDRDDVLSRFVAS 32518
32517 DEHSDEVLRDIVLSFLIAGRETTASGLSWFFWLLSSRPDVAARIADEVRAVRE 32359
32358 ATGTRPGEPFRFDALREMHYLHAALTESMRLYPPAPIDSQSCAADDTLPDGTLLRAGWSV 32179
32178 TYSAYAMGRLAAIWGEDCLEYRPERWLGDDGAFQPASPFRFTVFHAGPRMCLGKEMAYVQ 31999
31998 MKSIVANVLEEFEVDVVKEVAGGGVPEHVLSVTLRMKGGLPVKIRRKTEAY* 31843

>aaaa01001005.1 (indica cultivar-group) ortholog of AL606588.1 
23647 ALVILLALLLTLVLSHFLPLLLNPKAPKGSFGWPLLGETLRFLSPHASNTLGSFLE 23480
23479 DHCS
23110 RYGRVFKSHLFCTPTIVSCDQELNHFILQNEERLFQCSYPRPIHGILGKSSMLVVLGEDH 22931
22930 KRLRNLALALVTSTKLK 22880
22527 FSVIVKQVLGLSPEEPVTAMILEDFLAFMKGLISFPLYIPGTPYAKAVQ 22381
22264 ARARISSTVKGIIEERRNAGSSNKGDFLDVLLSSNELSDEEKVSFVLDSLLGGY 22100
22099 ETTSLLISMVVYFLGQSAQDLELVKVYRLLMLKKTE
21919 EHEGIRSKKEKDEFLSSEDYKKMEYT 21842
20699 SKKFTPFGGGPRLCPGSELAKVEAAFFLHHLVLNYR 20592

>aaaa01001026.1a $PI (indica cultivar-group) 3 defects, probable pseudogene
75% to AP003523.1
     MAEVVQLHHLILLLPLFILPSSSSVR (fs)
3368 RRRGACGRLPPSPWALPVIGHLHHLAGALPHRAMRDIARRHGPLVLLRLGELPVVVIASS 3189
3188 ADAARNVMKTHDLAFATRPITHMMRLVFPEGSEGIIFSPYGETWRQLRKICTVELLSARR 3009
3008 VNSFRSVREEEVNRLLRAVAAAAASATSPAKMVNLSELMSAYAADSSVRAMIGRRCKDRD 2829
2828 KFLEMLERGIKLFVTPSLPDLYPSSRLAMVVSRMPRRMRRHREEVFAFLDAIIAEHQENR 2649
2648 ASGEDEEDLLDVLLRIQREGCMEST (fs) 2580
2572 PLLSTESIRTTIG bad boundary 0 expected 2540 
1662 DLFNGGSETTATTLQWIMAELMRNPRVMQKAQDEVQRVFIGQHKVTEENLSNLSYMYLVI 1483
1482 KEALRLHPPGPPLLPRECRTTCQVLGFDVPKGTIVLVNMWAINRDPKYWDQSKEFIPERF 1303
1302 EHVDINFKGMNFEYMPFGAGRRMCPGMAFGLVNLELVLASLLYHFDWKLSDKIKVGDLDM 1123
1122 TEERGATTRRLHDLLLVPVIRVPLPLDSRS* 1030

>aaaa01001026.1b $PI (indica cultivar-group) Pseudogene of AP003523.1e
      MAGFPVYL (deletion and fs) LAA (fs) LIILPMANLIRSARHRRLAGAR (fs)
16438 PPPGPWALPVIGHLHHLAGKLPHHHKLRDLAARHGPLMLLRFGELPVVVASSAGAAREITK 16620
16621 THDLAFATRPVTRTARLTLPEGAEGIIFAPYGDGWRQLRKICTLELLSARRVQSFRAVRE 16800
16801 EEVRRLLLAVASPSPEGTTATASVVNLSRMISSCVADSSV RAIIGSGRFKDRETFLRLME 16980
16981 RGIKLFSGPSLPDLFPSSRLAMLVSRVPGRMRRQRKEMMEFMDTIIEEHQAAREASM 17151
17152 ELEKEDLVDVLLRVQRDGSLQFSLTTDNIKAAIA (0) 17253
this segment is homologous to 108 aa region before the sequence gap at 17972
gene may not be assembled correctly
RAMIGSRFKDRN*FLAMLERGIKLFVTPSLPDLYPSSRLAMVVSRMPRRMRRHREEVFAFLDAIIAEHQENRASGEDEEDLLDVLLRIQREGCMESTVSTESIRTTIG (0) 
      missing Ihelix exon 
19112 YLHLVIKETLRLHPPAPLLLARECREPCQILGFDVPKGAMVLINAWSIGRDPSNWHAPKK 19291
19292 FMPERFEQNNIDFKRTSFKYIPFGAGRRICPGMTFGLANIELLLASLLYHFDWELPHGMQ 19471
19472 AGDLDMTETLAVTARRKADLLVVPVVRVPIVG* 19570

>aaaa01001026.1c $FI (indica cultivar-group) Cterminal differs from AAAA01001026.1b
20983 MAAAASSVLAYLLVVALLAIVVPFVYFNRVARRRGGDVRLPPSPWGLPVIGHLHHLVGAL 21162
21163 PHVAMRDLARRHGPLMLLRLGELPVVVASSAEAAREVMKTRDLDFATRPMSRMARLVFPE 21342
21343 GGEGIIFAPYGDRWRELRKICTVELLSARRVQSFRPVREEEAGRLLRAVAAASSPSPAQ 21519
21520 AAVNLSALLSAYAADSAV RAIIGSRFKDRDKYLMLLERGLKLFARHTLPDLYPSSRLAMW 21699
21700 LSRMPRRMMQHRREAYAFTDAIIREHQENRAAGAGDDKEDLLDVLLRIQREGDLQF 21867
21868 PLSTERIKTTVG (0) 21903
22325 DMFAGGSETAGTALQWIMAELIRNPRVMHKVQDEVRQTLAGRDRVTEDAISNLNYMHL 22498
22499 VIKEVLRLHPPVPLLLPRECRNTCQVLGFDVPKGAMVLVNAWAISRDPQYWDEPEEFIPE 22678
22679 RFEDSNIDFKGTNFEYTPFGAGRRMCPGIAFGLANVELMLASLLYHFDWQLPDGMDTADL 22858
22859 DMTEEMVVSARRLPTAP* 22913

>aaaa01001026.1d $FI (indica cultivar-group) 
28790 MAAFLVYVLVLVPLAVVPFVYFNRVARRRGGDVRLPPSPWGLPVIGHLHHLVGALPHVA 28966
28967 MRDLARRHGPLMLLRLGELPVVVASSAEAAREVMKTRDLDFATRPMSRMARLVFPEGGEG 29146
29147 IIFAPYGDRWRELRKICTVELLSARRVQSFRPVREEEAGRLLRAVAAASPGQAVN 29311
29312 LSELLSAHAADSSVRAIMGDRFRDRDAFLAMLERGLKLFAKPALPDLYPSSRLAMLLSRM 29491
29492 PRRMKQHHRDMVAFLDAIIQEHQENRSAAGDDDDNDLLDVLLRIQREGDLQFPLSS 29659
29660 ESIKATIG (0) 29683
29867 DMLVGGSETAATTLHWIMAELVRNPKVMQKAQDEIRRELIGHRKVTEDTLCRLNYMHMVI 30046
30047 KEALRLHPPGSLLLPRECRRTCQVLGYDIPKGATVFVNVSAIGRDPKYWDEAEEFIPERF 30226
30227 EHSDVDFKGTHFEYTPFGAGRRMCPGMAFGLANVELTLASLLYHFNWELPSGIHAENLDM 30406
30407 TEEMRFTTRRLHDLVLIPVVHVPLPTI* 30490

>aaaa01001134.1a (indica cultivar-group) ortholog of AC116949.3 chromosome 11
16346 MIRERQKLGVGSSHDLLSRFMASTGVDDAAADDKFLRDIVVSFLLAGRDTVSTALTTLFM 16525
16526 LLSKNPEVAAAMRAEAEAGDGGETGAAITYEHLKGLHYTHAVLHENMRLFPPVQFDSK 16699
16700 FCAAADVLPDGTYVGGDARVMYHPYAMGRMPHIWGADYAAFRPARWLTGPGASFVPANPY 16879
16880 KYPVFQAGQRVCLGKELAVTEMKAASVAVVRAFDVEVV 16993

>aaaa01001134.1b (indica cultivar-group) ortholog of AC116949.3 chromosome 11
24225 KAIKLIDGLAAAMIRERRKLGVANSHDLLSRFMASSGDDARGAADDKFLRDIVVSFLLAG 24404
24405 RDTVSSALTTLFMILSKNPDVAAAMRAEAGAAAGESAAVSYEHLKRLNYTHAVLYE 24572
24573 NMRLFPPVQFDSKFCAAADVLPDGTYVDGGARVMYHPYAMGRMPRIWGADCDAFRPER 24746
24747 WLTGAGGAFVPESLFKYPVFQAGLRVCLGKELAITEMKAVSVAVVRAFDVEVV 24905

>aaaa01001195.1a (indica cultivar-group) AP003378.1 $F chromosome 1 96% 4 diffs
9602 GTWVWLAPGVLAKDPKNFPEPEVFRPERFDPNGEEERRRHPYAFIPFGIGPRVCIGQK 9778
9779 FSIQEIKLSVIHLYRHYVFRHSPSMESPLEFQFAIICDFKYGVKLQVIKR 9928

>aaaa01001195.1b (indica cultivar-group) AP003378.1 $F chromosome 1 97% 3 diffs
18648 GTWVWLAPGVLAKDPKNFPEPEIFRPERFDPNGEEERRRHLYAFIPFGIGPRVCIGQ 18818
18819 KFSIQEIKLSVIHLYRHYVFRHSPSMESPLEFQFAIICDFKYGVKLQAIKR 18971

>aaaa01001209.1 $FI (indica cultivar-group) ortholog of AL662933.1 99%
26186 MEINSEATVTLVSVVTLPILLALLTRKSSSKKRRPPGPWNLPLVGGLLHLLRSQPQVALR 26365
26366 DLAGKYGPVMFLRTGQVDTVVVSSPAAAQEVLRDKDVIFASRPSLLVSEIFCYGNLDIGF 26545
26546 APYGAYWRMLRKLCTVELLSTKMVRQLAPIRDGETLALVRNIEAAAGGKKPFTLATLIIS 26725
26726 CTNTFTAKAAFGQACGGELQEQFLTALDEALKFSNGFCFGDLFPSLRFIDAMTGLRSRLE 26905
26906 RLRLQLDTVFDKIVAQCESNPGDSLVNVLLRIKDQGELDFPFSSTHVKAIIL 27061
      DMFSGGTETTSSTTEWLMSELMRNPEVMAKVQAEVRGVFDNKSPQDHEG 27542
27543 LLENLSYMKLVIKETLRLNPVLPLLLPHFCRETCEIGGYEIVEGTRVLINSWAMARSPEY 27722
27723 WDDAEKFIPERFEDGTADFKGSRFEYLPFGTGRRRCPGDIFAMATLELIVARLLYYFDWS 27902
27903 LPDGMQPGDIDMELVVGATARRKNHLQLVASPYKPIAMQS 28022

>aaaa01001213.1 (indica cultivar-group) orth AP004028.1 $F chromosome 2 99%
6134 RRRRLLIRCSASGGNNGKGGGGSGSDPILEERRRRRQAELAARIASGEFTAQGPA 6298
6299 SVLILSHVAGAFPSSVDDLMESSLSFFRWIAPLAAGLAKLGPPGELAAALLTKVAGGGG 6475
6476 PEIPQAVGSMSAVTGQAFFIPLYDLFLTYGGIFRLNFGPK (0)
     SFLIVSDPAIAKHILRDNSKAYSK (0)
     GILAEILEFVMGTGLIPADGEIWRVRRRAIVPAMHQK (0)
     YVTAMISLFGEASDRLCQKLDKAASDGEDVEMESLFSRLTLDVIGKAVFNYDF 7195
7196 DSLSYDNGIVE 7228
7327 AVYVTLREAEMRSTSPIPTWEIPIWKDISPRQRKVNEALALINKTLDELIDICK 7491
     RLVEEEDLQFHEEYMNEQDPSILHFLLASGDD 7676
7754 VSSKQLRDDLMTMLIAGHETSAAVLTWTFYL
8091 LTSCK*LVSLTYGQADTVLGDRLPTIEDVKKLKYTTRVINE (0)
     SLRLYPQPPVLIRRSIEEDMLGGYPIGR 8378
9054 GEDIFISVWNLHHCPKHWDGADVFNPERWPLDGPNPNETNQNFRF 9191
10423 SYLPFGGGPRKCVGDMFATFEVICFSF*RISSFNFKMS 10536
10717 QTVVATAMLVRRFDFQMAPGAPPV 10788
10863 VEMTTGATIHTTEGLKMTVTRRTKP 10937

Duplicate last exon
20680 VEMTTGATIHTTEGLKMTVTRRTKP 20606

>aaaa01001279.1 (indica cultivar-group) ortholog of AP005302.1a
AVPGLPIIGNLHQLKE 20880
20881 KKPHQTFAKWAEIYGPIYTIRTGASSVVVLNSTEVAKE 20994

>aaaa01001325.1 (indica cultivar-group) ortholog to AP003822.1 $F chromosome 7
24910 KSKRERDYIATIHEFLVVVFSLQLGMILNETLRLYPPAVAMIRTAKEDVELGGCVVPAGT 25089
25090 EVMIPIMAVHHDAAAWGDDAAEFNPARFAADDDGGRRRHPMAFMPFGGGARVCIGQNMAL 25269
25270 MEAKVALAVVLRRFEF 25317

>aaaa01001427.1 (indica cultivar-group) orth of AP002484a $F 99%
3314 PVFGMLPFLVQNLHYIHDKVADVLREAGCTFMVSGPWFLNMNFLITCDPATVNHC 3150
3149 FNANFKNYPKGSEFAEMFDILGDGLLVADSESWEYQRRMAMYIFAARTFRSFAMSTIAR 2973
2972 KTGSVLLPYLDHMAKFGSEVELEGVFMRFSLDVTYSTVFAADLDCLSVSSPIPVFGQATK 2793
2792 EAEEAVLFRHVIPPSVWKLLRLLNVGTEKKLTNAKVVIDQFIYEEIAKRKAQASDGLQGD 2613
2612 ILSMYMKWSIHESAHKQKDEQFLRDTAVGFIFAGKDLIAVTLTWFFYMMCKHPHVEERIL 2433
2432 QELKGLQSSTWPGDLHVFEWDTLRSAIYLQAALLETLR
2209 RLFPATPFEEKEALVDDVLPNGTKVSRNTRIIFSLYAMGRIEGIWGKDCMEFKPERWVSK 2030
2029 SGRLRHEPSYKFLSFNTGPRSCLGKELSLSNMKIIVASIIHNFKVELVEGHEVMPQSS 1856
1855 VILHTQNGMMVRLKRR 1808

>aaaa01001441.1 (indica cultivar-group) ortholog of >AP004129.1 $F chromosome 2
26229 CGLPLPPGSMGWPYVGETFQLYSSKNPNVFFNKKRNKYGPIFKTHILGCPCVMVSSP 26059
26058 EAARFVLVTQAHLFKPTFPASKERMLGPQAIFFQQGDYHAHLRRIVSRAFSPESIRASVP 25879
25878 AIEAIALRSLHSWDGQF 25828
25639 EELKQCYLTLEKGYNSMPVNLPGTLFHKAMKARKRLGAIVAHIISARRERQRGNDLLG 25466
25465 SFVDGREALTDAQIADNVIGVIFAARDTTASVLTWMVKFLGDHPAVLKAVT 25313
24599 FMPFGNGTHSCPGNELAKLEMLVLFHHLATKYRWSTSKSESGVQF 24465

>aaaa01001473.1 (indica cultivar-group) orth of AP002899 $F 99%
6721 IVFLQVTMILHEVLRLYPPVVFLQRTTHKEIELGGIKYPEGVNFTLPVLSIHHDPSIWG 6897
6898 QDAIKFNPERFANGISKATKFQTAFFSFAWGPRICLGQSFAILEAKMALATILQS 7062
7063 FSFELSPSYTHAPHTVLTLQPQYGSPIKLK 7152

>aaaa01001474.1 (indica cultivar-group) ortholog to AP003927.1 $P
25134 PLLVPHHARENTVVAGYDVPAGTRVLVNVWAIARDPASWLDRPDAFLPERFLPGAGSCDD 24955
24954 VVDVHGQHFELLPFESGRQIYPATNLAKKMVALGVASLLQGFAWR 24820 frameshift
24817 EDVSMEELVGLSTRRKVPLVAVAE 24746 frameshift
24743 RLPAHERR 24720

>aaaa01001499.1 (indica cultivar-group) 85% to AP004181.1 $F
8039 IRSRPAMAPPPVNSGDAAAAATGEKSKLSPSGLPIREIPGGYGVPFFSPLRDRLDYFYFQ 7860
7859 GAEEYFRSRVARHGGATVLRVNMPPGPFISGDPRVVALLDARSFRVLLDDSMVDKADTLD 7680
7679 GTFMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVE 7500
7499 AGLGAAVEFNKLNMRYMLDFTCAALFGGEPPSKVVGDGAVTKAMAWLAFQLHPIA 7335
7334 SKVVRPWPLEELLLHTFSLPPFLVRRGYADLKAYFADAAAAVLDDAEKSHPGIPRDELLD 7155
7154 NLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVRAAADDGITLAAVERMP 6984
6983 LVKSVVWEALRMNPPVEFQYGHARRDMIVESHV*CFR 6873

>aaaa01001606.1a (indica cultivar-group) ortholog of AC078944.5b >99%
AAAA01032734.1 (indica cultivar-group) missing Cterm, runs off end
2001 MATWILGWLLWLPVFLISLYLVDILAHSCRRLPPGPRPLPFIGSLHLLGDQPHRSLAGLA 1822
1821 KKYGPLMSLRLGAVTTVVVSSPEVAREFVQKHDAVFADRSIPDSIGDHTKNSVIWLNPGP 1642
1641 RWRALRRIMATELFSPHQLDALQQLRQEKVAELVDHVARLARESAAVDVGRVAFATSLNL 1462
1461 LSRTIFSRDLTSLDDRGASREFKQVITDIMEAAGSPNLSDFYPAIAAVDLQGWRRRCARL 1282
1281 FTQLHRLFDDEMDHRKLHSRHGG 1213 frameshift
1211 PGENGKEKDDFLEVLLRLGARDDDIAGLDGDTLRSLF 1101
572 DLFAAGSDTSSSTIEWAMVELLKNTLSMGKACDELAQVVGSRRRIEESEIGQLPYLQAVI 393
392 KETLRLHPPVPLLPHRAKMAMQIMGYTIPNGTKILINVWAMGRDKNIWTEPEKFMPERFL 213
212 DRTIDFRGGDLELIPFGAGRRICPGMPLAIRMVHVVLASLLIHFKWRLPVEVERNGIDMT 33
32  EKFGLTLVKA 3

>aaaa01026521.1 (indica cultivar-group) ortholog of AC078944.5a 99%
AAAA01001606.1b (indica cultivar-group) 
    1 RRIMAAELFAPHRLDALRRLRREKVQELVDHVARLAEREGGAAAVDVGRVAFATSLNLLS 180
  181 STIFSRNLTSLDDHGESMEFKEVVVEIMEAGGCPNVSDFFPAIAAADLQGWRRRMACLFA 360
  361 RLHRVFDAVVEERLSERDAGEARKGDFLDVLLDVAARDNDSAGLDRDTLRSLFT 522
25247 DLFAAGSDTSSSIVEWAIAELMRNPLCMIRACDELS 25140 (0?)
25139 QAIGSGTNIEESDIGQLPYLQAVVKETFRLHPPVPLLLPRQAETTTNIAGYTIPKGARVF 24960
24959 VNVWAIGRHKDTWSQPEKFMPERFFERNIDFRGVHFELIPFGAGRRICPGLPLANRMVHL 24780
24779 VLGSLLNQFKWNLPVDIERNGIDMSEKFGLTLVKAIPLCALVTPISVESGDH 24624

>aaaa01001621.1a $FI (indica cultivar-group) ortholog of AC092749.1 >99%
9137 MVFLLVCMCSLLLMFLISYALQLFGDARRRLPPGPTPLPLIGNLLDIASDLPHRSLARLA 9316
9317 GRHGPLMAVRLGTVVAVVASSPSTAREVLQTHNGSLTGRVPPDAWHGVGHAANSVFVLPP 9496
9497 RRKWRALRRIGAEHLLSARQLDGRRLLPLLRDAVLDLLRRVSEMSAASGGGAGAPVQVGH 9676
9677 AAFAAMMDMQWRAMFSAGLEDDDARVLQDAAREAVALSLKPNLSDFYPALAAVDLQGLRR 9856
9857 RFAGRVGTVYHLVDEQIERRMRRRREAAGDDGEARSEDDLLDVLLDMSEHGKDDGKVAID 10036
10037RDLIRTFLT 10063 (0?)
12305 DIFLATVDTIASTLEWAMAELLQDRETMRKLQEELKKVLGSKTHAEYADMDRLPYLRAVI 12484
12485 KETLRLHPVVPIVPNVAEEMVEIHGHVVPRGSTILVNLWAVHRDAEAWPEPNRFLPERFM 12664
12665 LRQHGQEAAGRALGTATTEFELIPFSAGRRVCLGLPLATRMLHAMLGSLLHRFEWTLPLE 12844
12845 VKENGVDMSENLGLTMTMATPLQAIAKSI 12931

>aaaa01001621.1b $PI (indica cultivar-group) ortholog of AC092749.1 $P 1 aa diff
16168 LMAVRLGTVVSTVASSPSTARQILQTHNGSLTGRV
      AWHGVGVGHAANSVFVLPPRRKWRALRRIGAEHLLSTRQLDGACMPLLR 16414 frameshift
16416 SEMSAASGGAPVQVGHAAHAVFAAMVDMQWRAMFSAG 16526

>aaaa01001626.1 $FI (indica cultivar-group) Cterm ONE FRAMESHIFT
22316 MQLTSSTVFWLTTAVAFLLINTVILRALQKRKSSPAAAAAAPPPPVVQGVGLVRFV
      RAMARDGPLEAIREQQAKLGSVFTASAPLGTFLIGSEVSSHFYVAPDSEISMGRLY
      EFTVPIFGPGVLYGVDLETRKEQIRFNWDILKPRSLKASVGAMAEEVE (0) 22795
23040 NYFSRWGDQGTVDLKHELEQVLMLTASRCLLGKELRER 23153 (FS)
23156 VPGKLCELFGELDNGLHLISGLLPYLPIPAH
23249 RRRDRARQRLGEIITEVIRSRRNSSRGAAGTDENNDDMLQCLINSRYKDGCAMTDAE 23419
23420 TAGLVVALMFAGKHTSSGVSIWTGVHLLSNPNHLAAVVAEQDRLMASCPGRTDDYHRLD 23596
23597 YDTVQEMRSLHCCVKEALRLHPPVAAVSQAYKHFTVQTKEGKEYTIPGGHMVVSTILVNH 23776
23777 YLPHIYKDPHVFDPQRFAPGREEEKVAGRFSFLSFSAGRHACAGESFSYTQIKVLWSYLL 23956
23957 SNFEIKMVSPFLETEWSTVIPEPKGKVMVSYRRRTAPK* 24073

>aaaa01001667.1a $FI (indica cultivar-group) ortholog of AC118672.1b
3640 MELLLLCTPCVILLLSSLYLLRLFVDARRNLPPGPRPQPLIGNILDLGSQPHRSLARLAGRYGPLMTL 3437
3436 RLGTVTTVVASSPGAARDILQRHDAAFSARSVPDAARACGHDGFSMGMLPPSSALWRALR 3257
3256 RVCAAELFAPRSLDAHQRLRRDKVRQLVSHVARLARDGAAVDVGRAAFTASLNLLSSTIF 3077
3076 SADLADFGDARAESSVGDLRDLISEFTIVVGVPNVSDFFPAVAPLDPQRLRRRVARVFER 2897
2896 LQAVFDGHIERRLRDRAAGEPPNNDFLDALLDYRSPEDGRGFDRPTLQFLFT (0)
     DLFSAGSDTSAVTVEWAMAQLLQNP 2537
2536 PAMAKAREELARVIGSKQEIEESDISQLKYLEAVVKETLRLHPPAPFLLPHQAETT 2369 (fs)
2367 TEIRGYTVPRGARVLVNVWAIGQDPELWPEPEVFTPERFLEKEMDFRGKDFELLP*GSGR 2188
2187 RVCPGLPLAVRMVHLMLASLLHRFEWRLLPEVEKNGVDMAEKFGMILELATPLRAVAIPV* 2005

>aaaa01001667.1b (indica cultivar-group) ortholog of AC118672.1a
11859 MELLLLYAPCVILLVSSLYLLRLFSDARRNLPPGPRPLPLVGNLLELGAKPHRSLARLAERHGPLMTL 11656
11655 RLGAVTTIVASSPDAARDILQRHDAAFSTRPVPDIVRACGHDRFAMPWLPPSSPQCRALR 11476
11475 KVCSAELFAPRRLDAQQRLRREKARRLVSHVARMAREGAAVDVRRVVFTTLLNMLSCTLF 11296
11295 SADLADLDEGRAGSAGELADTVAEFAGTVGVPNVVDYFPAVAAFDPQRLRRRLSRVFTR 11119
11118 LFAEFDEQIERRMRERDAGEPPKNDFLDVLLDYRTTEDGRQFDRQTLRSRFT (0) 10963
10235 DLFSAGSDTSAVTVEWAMAQLLQSPSSMMKAREELTRVIGSKPEIDESDIDSLEYLQAVV 10056
10055 KETFRLHPPAPLLLSHRAETDTEIGGYTVPKGATVMVNIWA 9933

>aaaa01010113.1 $FI (indica cultivar-group) ortholog of C73729
AAAA01001707.1a PLUS STRAND CTERM 439507 MIGHT BELONG TO END OF AAAA01010113.1 34% to 88A3
6784 MSGATADWAWWLGLVAGAVPLLALAVWHCTDAFHSAAFAFRRRGTRAR
     LPPGHMGLPFVGETLALIWYFNLARRPDAFIEAKRRRYCYGDGDDDGGIYRTHLFGSPAV 1481
     LVCSPASNGFVFRSAPPGSFGVGWPVPELVGASSLVNVHGGRHARLRRFVLGAINRPG 1307
     SLRTIARVAQPRVAAALRSWAAKGTITAATEMKN (0) 6185
5443 VTFENICKIFVSMEPSPLTEKIHGWFTGLVAGFRSLPLDMPGTALHHARK (0) 5294
5218 CRRKLNSVFREELERRKVKMVTGEGGDDDDDGDLMSGLMHVEDEQGR
     RLD DDEVVDNIVSLVIAGYESTASAIMWATYHLAKSPSALAKLR 4946 (0)
2321 EENLAIAKEKNGDGFITLEDVSKMKYTAK 2235 (0)
2148 VVEETIRLANIAPMAHRVALRDVEYR 2071 (1)
1745 GYTIPKGWKVIVWIRSLHVDPAHYDNPLSFNPDRWD (0) 1638
9851 KSAELGTYQVFGGGERICAGNMLARLQLTIMLHHLSCGYK (2) 9970
10088 WELLNPDAGIVYLPHPRPTDGAVMSFSEL* 10177

>aaaa01001707.1b (indica cultivar-group) PLUS STRAND NTERM aa 1262
13182 MMSGMQTPVVAVGATDWAWRLGALVAGAVPLLALAVWHCTDAFHCAAFAFRRRGTRRARR 13361
13362 LPPGHMGLPFVGETLALLWYFNLARRPDAFIEAKRRRYCYGDGDDDAGIYRTHLFGSPAV 13541
13542 LVCSPASNGFVFRSAPPGSFGVGWPDPELVGVSSIVNVHGGRHARLRRFVLGAINSPNSL 13721
13722 RSFAEVVQPRVAAALRSWAAKGTITAATEIKK (0) 
13909 VTFENICRMFVSMEPSPATAKIDEWFAGLVAGFRALQLDIPGTAFHHARK 14058 (0)

>aaaa01001707.1c (indica cultivar-group) MINUS STRAND aa 148507
27328 ELVGVSSIVNVHGGRHARLRRFVLGAINSPNSL
      RSFAEVVQPRVAAALRSWAAKGTITAATEMKK 27134 (0)
27014 VTFENICRMFVSMEPSPATAKIDEWFAGLVAGFRALQLDIPGTAFHHARK 26865 (0)
26763 QCRRKLNSVFREEVKRRKLKAKLEEHDDVMSGLMRMEDEQGRRLGDDEVVDSIVSLVLGG 26584
26583 YESTSSAIMWATYHLAKLPAVLAKLR 26506 (0)
20697 EENLAIAKEKNGASFITLDDISKMKYTAK 20611 (0)
20524 VVEETIRLANISPMLYRVALRDVEYR 20447 (1)
19953 GYTIPEGWKVIVWIRSLHVDPKYYDDPLSFNPDRWD 19846 (0)
18777 KAAKPGTYQVFGGGERICAGNMLARLQLTIMLHHLSCGYK 18658 (2)
18547 WELLNPDAGVVYLPRPRPTNGAAMSFSKL* 18458

>aaaa01001712.1 $PI (indica cultivar-group) missing Cterminal exon 
not found in 20000bp of seq.
6693 MAMAQDVTGYLCLFVALLVLLKVVRKASGNGAAGRLRLPPGPWRLPVIGNLHQVAMGG 6866
6867 PLVHRTMADMARRLDAPLMSLRLGEIPVVVASSADAAREITKTHDVAFATRPLSSTIRVM 7046
7047 VSDGEGLVFTPYGALWRRLRKIAMLELLSARRVQSFRRVREEEVGRLVAAVAAAAAAR 7220
7221 PGEAVNLSQLIAELISDTAARTIIGDRFEKRQELLEGLTEGIRISSGFSLGDLFPSSRL 7397
7398 ANLIGGTTRRAEANHRKNLALIECALRQHEERRAAGDEEDDEDLVDVLLRVQKEGG 7565
7566 GEVPLTMGNVKVVIR (0) 7610

>aaaa01001902.1 (indica cultivar-group) ortholog of AC087192 $F
13741 EEFSPERFMEGGEGEGVRLAIGSKQKATTKVKMMPFGAGRRTCPGMGYAILHLEYFLANL 13920
13921 VTAFEWRRVPWEEEVDLTADYGFITTMQHPLR 14016

>aaaa01001928.1 (indica cultivar-group) 89% AP003711.1 $F 4 diffs
18830 RTSGKRLPPSPFGLPILGHLHLLTPLPHQALHRLAARHGPLLYLRLGSI 18684

>aaaa01002000.1 (indica cultivar-group) ortholog of AAAA01002000.1 99%
6046 METADLCCLLALLPLVYCLLTLFHGSRESDLRLPPGPWRLPLIGSLHHLFGRTLPHHALR 5867
5866 DLARLHGPLMLLSFGQASPVVIASTAIAAREIMRTHDDNFSTRPLSTVLKVCTRYGAGMT 5687
5686 FVPYGEHWRQVRKICSLELLSPRRILKFRSIREEEVARLVLAIASSSTPTPTPPAPVNLS 5507
5506 KLLSNYMTDATVHIIMGQCFRDRDTLVRYVDEAVRLASSLTMADLFPSWRLPRVMCATTL 5327
5326 HRAEVFVESVMEFMDRVISEHLEKRSCQGGDREEDLIDVLLRLQAEGNLEFELTTSIIKA 5147
5146 IIF 5138
     ELLAGGSEAPITTLQWAMAELMRNPDVMSRAQAEVREAYKEKMKV 4911
4910 TEEGLTNLPYLHCIIKETLRLHTPGPFVLPRECQEQCQILGYDVPKRATVVVNIWAICRD 4731
4730 AEIWDEPEKFMPDRFEGSAIEHKGNHFEFIPFGAGRRICPGMNFALANMELALASLLFYF 4551
4550 DWSLPEDVLPGDLDMTETMGLTARRKEDLYVCAIPFVQLP 4431

>aaaa01002047.1a $FI (indica cultivar-group) ortholog of AP004001.1a 99%
2682 MAMVQDITGYLCLSLALLLLTLVLHKVARKATGNGAGKPRLPPGPWRLPVIGNLHQVAMG 2861
2862 GPLVHRTMADLARRLDAPLMSLRLGELRVVVASSANAAREITKTHDVAFATRPWSSTIRV 3041
3042 LMSDGVGLVFAPYGALWRQLRKIAVVELLSARRVQSFRRIREDEVGRLVAAVAAAPAAQP 3221
3222 VNVSERIAALISDSAVRTIIGDRFERRDEFLEGLAEAIKITSGFSLGDLFPSSRLASFVG 3401
3402 GTTRRAEANHRKNFELIECALRQHEERRAAGAVDDDEDLVDVLLRVQKDGSLQMPLTMGN 3581
3582 IKAVVL 3599
4057 ELFGAGSETSANTLQWAMTELIMNPRVMLKAQAELSNVIKGKQTISEDDLVELKYLKLII 4236
4237 KETLRLHPVVPLLLPRECRETCEVMGYDIPIGTIVLVNVWAIGRDPKYWEDAETFIPERF 4416
4417 EDGHIDFKGTNFEFIPFGAGRRMCPGMVFAEVIMELALASLLYHFDWELPDGISPTKVDM 4596
4597 MEELGATIRRKNDLYLIPAVRVPLSTVL 4680

>aaaa01002047.1b $FI (indica cultivar-group) ortholog of AP003990.1a 99%
16718 MADLELEKVASFLLAALLPLVLFKLAAAKRGGGDGGMRLPPGPWRLPVIGNLHQIMAGGQ 16897
16898 LVHRTMAGLARGLGDAPLLSLRLGEVPVVVASSADAAREIMSRHDAKFATRPWSPTVRVQ 17077
17078 MVDGEGLAFAPYGALWRQLRKITMVELLSPRRVRSFRRVREEEVGRLVVAVATAATRRPG 17257
17258 EAAVNVGERLTVLITDIAMRTIIGDRFERREDFLDAAAEWVKIMSGFSLGDLFPSSRLAS 17437
17438 FVSGTVRRAEANHRKNFELMDYALKQHEEKRAAAAAAGAGAVEDDEDIVDVLLRIQKEGG 17617
17618 LEVPLTMGVIKGVIR 17662
17911 DLFGAGSETSANTLQWTMSELVRNPRVMQKAQTELRDCLRGKQSVSEDDLIGLKYLK 18081
18082 LVIKETLRLHPVVPLLLPRECQETCNIMGYDVPKGTNVLVNVWAICRDPRHWENAETFIP 18261
18262 ERFEDSTVDFKGTDFEFIPFGAGRRMCPGLAFAQVSMELALASLLYHFDWELPSGVAPSN 18441
18442 LDMEEEMGITIRRKNDLYLVPKVHVPL 18522

>aaaa01002047.1c $PI (indica cultivar-group) ortholog of AP003990.1b 99%
20381 MEKVAWCACFLFLALMVVRLRTKRRGDNNGGVKLPPGPWRLPLVGNLHQVMARGPLVHRT 20560
20561 MADLARRLDAPLMSLRLGEVPVVVASSADAAREITKTHDVAFATRPWSSTIRVMMSEGVG 20740
20741 LVFAPYGALWRQLRKIAMVELLSARRVQSFRRIREDEVGRLVAAVAAAQPGEAVNVSERI 20920
20921 AALVSDAAVRTIIG 20962 
20979 VAWCACFLFLALMVVRLRTKRRGDNNGGVKLPPGPWRLPLVGNLHQVMA 21125 aa 452 out of sequence
21126 DLFPSSRLASFIGGTTRRAEANHRKNFELMECALKQHEEKRAAAAAAAAGAVEDDEDI 21299
21300 VDVLLRIQKEGSLQVPLTMGNIKAVVL 21380
22004 DLFSAGSETSANTLQ*AMAELIMNPRTMLKAQAELRDALQGKQIVSEYDLVKLKYLKLII 22183
22184 KETLRLHPVVPLLLPRECQETCKVMDYDIPIGTIVLVNVWVIGRDPKYWD 22333
22334 DAKTFRLERFEDGHVDFKGMNFEYLPFGAGRRMCPGVAFAEAIMELALASLLYHFDWEFP 22513
22514 DGILPAKMDMMEVMGSTV*KKNDLYLVPNAHVPVAP 22621

>aaaa01002066.1 $PI (indica cultivar-group) ortholog of AP003434.1b $F 99%
1728 MELSSLAALLHSPLLLAVLLLVFSWLIVSSTKKRPPPPCGDGGRRLPLPPSPPGVPLLGH 1549
1548 LPLLGTLPHRKLRSMAEAHGPVMLLRLGRVPAVVASSAAAAEEVMRTRDLAFASRPRVRM 1369
1368 SERLFYGRDM 1339 frameshift and deltion
     DFVDVMLDVSEAEEGAGAGAGGVLLDTVAIKAVIL 1233

>aaaa01002142.1a (indica cultivar-group) orth of AP003514.1 $F chromosome 6 97%
6   LYETLRLYGPVSLMARTATADAELGGVRVPKGTMTMIPMAILHRDADVWGAGAGEFDPL 182
183 RFRGGVNKAAAHAGALLAFSLGQRSCIGQDFAMMEAKTTLAMILRRFAFEVSPEYV 350
351 HAPLDYLTLQPQCGLPIILK 410

>aaaa01002142.1b (indica cultivar-group) 60% to AP003752.1c $F like 709B
4772 LYETLRLYGPVSMLVRTATADAELGGVRVPKGTMTMMPVAILHRDADVWGADAGEFAP 4599
4552 LAFSLGQRSCIGQDFAMMEAKTTLAMILRRFAFEVSPEYVHAPLDLLTLQPKCGLPMVL 4376
4375 K 4373

>aaaa01002164.1a $FI (indica cultivar-group) ortholog of AC084282b $F 100%
1187 MDNAYIIAILSVAILFLLHYYLLGRGNGGAARLPPGPPAVPILGHLHLVKKPMHATMSRL 1366
1367 AERYGPVFSLRLGSRRAVVVSSPGCARECFTEHDVTFANRPRFESQLLVSFNGAALATAS 1546
1547 YGAHWRNLRRIVAVQLLSAHRVGLMSGLIAGEVRAMVRRMYRAAAASPAGAARIQLKRRL 1726
1727 FEVSLSVLMETIAHTKATRPETDPDTDMSVEAQEFKQVVDEIIPHIGAANLWDYLPALRW 1906
1907 FDVFGVRRKILAAVSRRDAFLRRLIDAERRRLDDGDEGEKKSMIAVLLTLQKTEPEVYTD 2086
2087 NMITALTA 2110
2837 NLFGAGTETTSTTSEWAMSLLLNHPDTLKKAQAEIDASVGNSRLITADDVTRLGYLQCIV 3016
3017 RETLRLYPAAPMLLPHESSADCKVGGYNIPRGSMLLINAYAIHRDPAVWEEPEKFMPERF 3196
3197 EDGGCDGNLLMPFGMGRRRCPGETLALRTVGLVLGTLIQCFDWERVDGVEVDMTEGGGLT 3376
3377 IPKVVPLEAMCRPRDAMGGVLRELV 3451

>aaaa01002164.1b $FI (indica cultivar-group) ortholog of AC084282.1c $F 100%
6328 MDKAYIAVFSIAILFLLVDYFRCRRRRGSGSNNGENKGMLQLPPSPPAIPFFGHLHLIDK 6507
6508 PLHAALSRLAERHGPVFSLRLGSRNAVVVSSPECARECFTDNDVCFANRPQFPSQMPATF 6687
6688 YGAGFGFANYGAHWRNLRRIATVHLLSAHRVRGMAGVVSGEIRPMVQRMYRAAAAAGVGV 6867
6868 ARVQLKRRLFELSLSVLMEAIAQTKTTRPEADDADTDMSVEAQEFKNVLDELNPLLGAAN 7047
7048 LWDYLPALRVFDVLGVKRKIATLANRRDAFVRRLIDAERQRMDNGVDGGDDGEKKSVISV 7227
7228 LLSLQKTEPEVYKDIVIVNLCA 7293
8136 ALFAAGTETTAMTIEWAMSLLLNHPKILKKAKAEIDASVGNSRLINGDDMPHLSYLQCII 8315
8316 NETLRLYPVAPLLIPHESSADCKVNGYHIPSGTMLLVNVIAIQRDPMVWKEPNEFKPERF 8495
8496 ENGESEGLFMIPFGMGRRKCPGETMALQTIGLVLGALIQCFDWDRVDGAEVDMTQGSGLT 8675
8676 NPRAVPLEAMCKPREAMSDVFRELL 8750

>aaaa01002164.1c $FI (indica cultivar-group) ortholog of AC084282.1d $F 99%
11246 MV*AYIAIFSIAVLLLIHFLFRRRGRSNGMPLPPSPPAIPFFGHLHLIDKPFHAALSRLA 11425
11426 ERHGPVFSLRLGSRNAVVVSSPECARECFTDNDVCFANRPRFPSQMLATFNGTSLGSANY 11605
11606 GPHWRNLRRIATVHLLSSHRVSGMSGIISGQARHMVRRMYRAATASAAGVARVQLNRRLF 11785
11786 ELSLSVLMEAIAQSKTTRREAPDADTDMSMEAQELRHVLDELNPLIGAANLWDYLPALRW 11965
11966 FDVFGVKRKIVAAVNRRNAFMRRLIDAERQRMDNNDVDGGDDGEKKSMISVLLTLQKTQP 12145
12146 EVYTDTLIMTLCA
      PLFGAGTETTSTTIEWAMSLLLNHPEILKKAQAEIDMSVGNSRLISVV 12505
12506 DVHRLGYLQCIINETLRMYPAVPLLLPHESSADCKVGGYHIPSGAMLLVNVAAIQRDPVI 12685
12686 WKEPSEFKPERFENGRFEGLFMIPFGMGRRRCPGEMLALQTIGLVLGTMIQCFDWGRVDD 12865
12866 AMVDMTQSNGLTSLKVIPLEAMCKPREAMCDVLRKFM 12976

>aaaa01002175.1 (indica cultivar-group) orth of AC099043.1 $F chromosome 3 100%
4310 VIRRQTRASASASATDRQEVVSPKRRLPLRKVPGDYGPPVVGAIRDRYEYFYGPGGRDGF 4489
4490 FAARVRAHRSTVVRLNMPPGPFVARDPRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPS 4669
4670 TDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARV 4849
4850 GKADFGVHNDAAAFGFLCQGLLGRDPAKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVE 5029
5030 DTLLHSLRLPPALVKKDYDRLADFFRDAAKAVVDEGERLGIAREEAVHNILFALCFNSFG 5209
5210 GMKILFPTLVKWLGRAGARVHGRLATEVRGAVRDNGGEVTMKALAEMPLVKSAVYEALRI 5389
5390 EPPVAMQYGRAKRDMVVESHDYGYEVREGEMLFGYQPMATKDPRVFARPEEYVPDRFLGE 5569
5570 DGARLLRHVVWSNGPETAAPTLHDKQCAGKDFVVLVARLLLVELFLRYDSFDVEVGTSTL 5749
5750 GSSVTVTSLKKATF 5791

>aaaa01002200.1 $PI (indica cultivar-group) ortholog of AC087599.11 $P 94%
2930 PAPILVPRQSTATAVVQG*EILAKTSLFINVWAMGRYPAAWNSPEEFWPERFLASREAMD 3109
3110 FQGNNYQLILFITDRRICPDINFAVPVLETALVGLLHPTNELLGGGGGLMWLQRSCSRAR 3289
3290 RLRSTGHRRHRSGTHPAAAVAAAAT 3364

>aaaa01002235.1 (indica cultivar-group) orth to AL607001.1 gene 3 chr 4
6264 ALLCAALAAVVALLRWAYRWSHPRSNGRLPPGSLGLPVIGETLQFFAPNPTCDLSPFVKE 6443
6444 RIK
6563 RYGSIFKTSVVGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDNVGSLHGFM 6742
6743 YKYLKTLVLRLYGQENLKSVLLAETDAACRGSLASWASQPSVELKEGIST
     MIFDLTAKKLIGYDPSKPSQVNLRKNFGAFIRG 7102
7103 LISFPLNIPGTAYHECME
7455 GRKNAMKVLRGMMKERMAEPERPCEDFFDHVIQELRREKPLLTETIALDLMFVLLFASF 7634
7635 ETTALALTIGVKLLTENPKVVDALX 7706
7850 EEHEAIIRNRKDPNSGVTWAEYKSMTFTSQXXXXXX 7945
8422 RLANIVPGIFRKALQDVEIKX 8481
8589 YTIPAGWGIMVCPPAVHLNPEIYEDPLAFNPWRWQVS 8699
9679 EITGGTKHFMAFGGGLRFCVGTDLSKVLMATFIHALVTKYR 9804
9888 WRTVKGGNIVRTPGLSFPDGFHIQLFPK 9971

AUTHORS   Chaban,C.
  TITLE     Phytochrome response in rice coleoptile - just a matter of auxin?
  JOURNAL   Thesis (2002) Department of Botany, University of Freiburg,
            Freiburg, Germany
(CYP87A3 gene) AJ459255 authors assigned should be 87A4
MQPYLQLASLRLATTIPLAPRLYDANLLAASGAAMASSMAYIAL
LCAALAAVVALLRWAYRWSHPRSNGRLPPGSLGLPVIGETLQFFAPNPTCDLSPFVKE
RIKRYGSIFKTSVVGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDNVGSL
HGFMYKYLKTLVLRLYGQENLKSVLLAETDAACRGSLASWASQPSVELKEGISTMIFD
LTAKKLIGYDPSKPSQVNLRKNFGAFICGLISFPLNIPGTAYHECMEGRKNAMKVLRG
MMKERMAEPERPCEDFFDHVIQELRREKPLLTETIALDLMFVLLFASFETTALALTIG
VKLLTENPKVVDALREEHEAIIRNRKDPNSGVTWAEYKSMTFTSQVIMEIVRLANIVP
GIFRKALQDVEIKGYTIPAGWGIMVCPPAVHLNPEIYEDPLAFNPWRWQGKPEITGGT
KHFMAFGGGLRFCVGTDLSKVLMATFIHSLVTKYSWRTVKGGNIVRTPGLSFPDGFHI
QLFPKN
AL607001.1c $F chromosome 4 clone OSJNBA0088I22, gene 3 136970-140694 61% to
            87A2

>aaaa01002256.1a (indica cultivar-group) orth CYP72A24 $F AP002839 chr 1 100% 
18321 GVRYPAGVVLTLPLLCVHHDKDVWGADADEFRPERFAEGISKASREAPAFFPFGWGP 18491
18492 RICIGQNFALLEAKMGLSMILQRF 18563

>aaaa01002256.1b (indica cultivar-group) orth CYP72A25 $F AP002839 2 diffs
21490 RRTKANAREVRELLKGIITKRESAMKDGHAVNDDLLGLLLETNIKESQEAGSSKP 21654
21655 TMTTKDIIEELKLLYFAGSDTTAVLLTWTMVLLSMHPKWQDRAREEVLRVFGKNSPDFE 21831
21832 GINHLK 
      VTMILHEVLRLYPPILLLGRE 22008
22009 AYEETELGGVTYPPGVTFALPIACIHHDPDVWGEDVGEFKPERFAEGVSRASKDSP 22176
22177 ALVPFSWGPRICVGQNFALLEAKMALSMILQRF 22275

>aaaa01002274.1a (indica cultivar-group) ortholog of AP003805.1 $F 100%
a duplicate of 1b
2088 MEDKVLLAVGASLVLVFLSKLISSYAKKPRLNLPPGPWTLPLIGSAHHLVSWSESVHSVI 1909
1908 GKLAREHGPVMQLWLGEVPTVVASSPEAAQEILRDHDLIFADRHLTSTTAAITFGGTDVV 1729
1728 MAQYGERWRHLRKLLTQELLTVARVRSFRRVREEEVARLVRDLSAAAASGATVNLTDMVN 1549
1548 RLVNDTVLRCSVGSRCKYREEFLAALHAILHQTSALSVADLFPSSKLASMVATGPRNVLA 1369
1368 NRNKVERIIEEIIQERKNQIETDMMSGNDDVGDKAAVESKSCSLDVLLRLQKEGGTPIPI 1189
1188 TNQVITVLLW 1159

>aaaa01002274.1b (indica cultivar-group) ortholog of AP003805.1 $F 100%
22179 MEDKVLLAVGASLVLVFLSKLISSYAKKPRLNLPPGPWTLPLIGSAHHLVSWSESVHSVI 22358
22359 GKLAREHGPVMQLWLGEVPTVVASSPEAAQEILRDHDLIFADRHLTSTTAAITFGGTDVV 22538
22539 MAQYGERWRHLRKLLTQELLTVARVRSFRRVREEEVARLVRDLSAAAASGATVNLTDMVN 22718
22719 RLVNDTVLRCSVGSRCKYREEFLAALHAILHQTSALSVADLFPSSKLASMVATGPRNVLA 22898
22899 NRNKVERIIEEIIQERKNQIETDMMSGNDDVGDKAAVESKSCSLDVLLRLQKEGGTPIPI 23078
23079 TNQVITVLLW 23108

>aaaa01002288.1 $FI (indica cultivar-group) 
13560 MDISLASLVLVLLAFVLPLLYLLLQLPGKKSGGGGGDGPRLPPSPAGCLPLLGHLHL 13390
13389 LGPLPHVALRSMAAAHGPVLRLRLGRVPTVVVSSAAAAEEVLRARDAAFSSRPRSAMAER 13210
13209 ILYGRDIAFAPYGEYWRQARRVCVVHLLSAQRVSSFRRVREEEAAALADAVRAAGRGGG 13033
13032 RAFDLSGLIVAYASAVVSRAAFGDESARGMYGGADGGRAVRKAFSDFSHLFGTKPVSDYL 12853
12852 PWLGWVDTLRGRERKARRTFEALDGVLDKVIDDHRRRRDSGRRQTGDADAGHRDFVDVL 12676
12675 LDVNEMDNEAGIHLDAIEIKAIIM 12604
12529 DMFVAGSDATSKPMEWAMAELVSHPRHMRRLQDEIRAVVGGGRVTEDHVDKLPYLRAAL 12353
12352 KEALRLHAPLPLLVARETVADTEIMGYHVAARTRVVINGWAIGRDTAVWGETAEEFMPER 12173
12172 FLAGGNGGGAAAADYKVQGFEMLPFGGGRRGCPGVTFGMATVE 12044
12041 SAVASLLYHFDWEAAAADGKGGREGTPLLDMSETSGISMGLKHGLPLVAKPRFP 11880

>aaaa01002303.1 $FI (indica cultivar-group) same seq as AAAA01000575.1
except 2 aa diffs and one short frameshifted region
3994 MDMEMGKLLHRPWKWSLNSPLLLLLIVPVMIHVQLKLRRRRKNAAVGTRLPPGPWRLPVI 4173
4174 VQSAPPRHEPEGGARALADLARRCGGGGGVMYLRLGELPVVVASSRDAAREVLRTHDAAF 4353
4354 ATRAMSVTVRDSIGDTVGILFSPYGERWRRLRGICSLELLNARRVRSFRPIREEQVARLV 4533
4534 GAIAAAAAAPGGDQPPPVNVSWQIAGALTDLTLRAIMGECGFRWREEFLETLGEAQRKAS 4713
4714 RFGVADLFPSSRLLRAVGSTAVRDVRALNAKLFELVDRAIEQHREAAATTAAGGDHDDGG 4893
4894 DDDARDDNECLLNTLMRIQKEGGGTLSMSTVKAVIL 5001
6869 DMFAGGSETTSTILEWAMSELVKNPQVMQKAQAQIRLALQGRSRITEDDLINLSYPKNII 7048
7049 KETLRLHPVAPLLGXKECQESCKILGYNIPKGSIMLVNVWAIGRDHRYWDDAEVFLPERF 7228
7229 EEITVDFGGTNYEFIPFGGGRRICPGITFAHATLEWALTALLYHFDWHLPPSVTPDGLDM 7408
7409 EEEFGMNVRRKRDLHLHPVIHVGVEKGIMS 7498

>aaaa01002376.1 $FI (indica cultivar-group) ortholog to AQ256364.1
73% to 73A5
899  MDALLVEKVLLGLFVAAVLALVVAKLTGKRLRLPPGPAGAPIVGNWLQVGDDLN 1060
1061 HRNLMALARRFGDILLLRMGVRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGKG 1240
1241 QDMVFTVYGDHWRKMRRIMTVPFFTNKVVAQNRAGWEEEARLVVEDVRRDPTAATSGVVI 1420
1421 RRRLQLMMYNDMFRIMFDRRFDSVDDPLFNKLKAFNAERSRLSQSFEYNYGDFIPVLRPF 1600
1601 LRRYLARCHQLKSQRMKLFEDHFVQERK 1684 (2)
3697 RVMEQTGEIRCAMDHILEAERKGEINHDNVLYIVENINVA 3816 (1)
4917 AIETTLWSIEWGIAELVNHPSIQSKVREEMASVLGGAAVTEPDLERLPYLQAVVKETLRLRMAIP 5093
5094 LLVPHMNLADGKLAGYDIPAESKILVNAWFLANDPKRWVRPDEFRPERFLEEEKAVE 5264
5265 AHGNDFRFVPFGVGRRSCPGIILALPIIGITLGRLVQSFDLLPPPGMDKVDTT 5423 (fs)
EKPGQFSTQILKHATVVCQ (fs)
PIDA*

>aaaa01002439.1 (indica cultivar-group) orth AP004092.1 $F chromosome 2
6997 ARRRGAPVLWPLVGIVPTLFVHRDDIYEWGSAALLRAGGVFPYRGTWGGGSSG 7155
7156 VITSAPANVEHVLRANFGNYPKGPYYRERFVELLGGGIFNAD 7281
7415 LPDVPFARAFELATELSLLRFVTPPFIWKAKRLLRAGSERRLVEATRAVREFAERAVADR 7594
7595 RNEMRKVGSLRGRCDLLSRLMSSAPGADYSNEFLRDFCISFILAGRDTSSVGLAWFFW 7768
7769 LLAGHPDVESRVVGDVLAAGGDIKRMDYLHAALTEAM 7879 frameshift
7881 RLYPPVPVDFKEALADDVLPDGTPVRARQRVIYYTYAIGRDPASWGDDAAAFRPER*MRA 8060
8061 GAFAGGESPFKYAVFNAGPRLCIGKRFAYTQMKTAAAAVLSRFAVEVVPGQEVKPKLT 8234
8235 TTLYMKNGLMV 8267

>aaaa01002589.1 (indica cultivar-group) 73% to AP003244 $F similar to CYP90D
21238 CKARPPAGSLGWPLVGETLQFISAAYSSRPESFVEKRCR 21110
21018 RYGKVFRSHLWGSPAVVSADAEASRAVLQSDASAFVPWYPRSLMELMGESSILVLGGAL 20839
20838 QRRVHGLAGAFFKSPELK 20785
17641 YELCIFCVQVITETLRIGNIISGIMRKAVRDVEVKGQGDVVIPKGWCVLVYFRSVHLDAN 17462
17461 IYDDPYAFNPWRWKERDMAAATTNSGSGFTPFGGGQRLCPGLDLARLQTSIFLHHLVTNF 17282
17281 TY 17276

>aaaa01002599.1a $FI (indica cultivar-group) ortholog of AP004326.2c $F 99%
12298 MAGIMDSTTASYYTTLLCGALLLAAVVFKLKTAAAFSRHNAGVNLPPGPWALPVIGSIHC 12119
12118 LLGSLPHHAMRELSRRYGPVMLLRLGHVRTLVLSSPEAAREVMKTHDVAFANRAVTPTAS 11939
11938 ILTYGARDIVFAPFGKHLRELRKLCALELLSPRRVRSFRHVREEEAARLARSVAAAASAS 11759
11758 SAVNVSELVKIMTNDVTMRAIIGDRCPQREEYLEALDKTMDLLAGFNLVDLFPGSPLARV 11579
11578 LGGRSLRTTKRVHEKLHQITEAIIQGHGIKDTVGDEHHECEDIL 11447
11446 DVLLRFQRDGGLGITLTKEIVSAVLF 11369
11213 DLFAGGSETTSTTILWAMSELMRSPHVMEQAKYEIRQVLQGKAMVSEADIEGRLHYLQLV 11034
11033 IKETLRLHPPVPIVIPRLCSKPNSKIMGYDIPQGTSVLVNVSAIGRDEKIWKNVNEFRPE 10854
10853 RFKDDIVDFSGTDFRFIPGGSGRRMCPGLTFGVSNIEIALVTLLYHFDWKLPSETDTHEL 10674
10673 DMRETYGLTTRRRSELLLKATPSY 10602

>aaaa01002599.1b $FI (indica cultivar-group) ortholog of AP004326.2b $F >99%
22237 MAGIVDTAAFCTLLCLLLTLVVFKLKTATSSRHNAGVNLPPGPWALPVIGSIHCLLGSLP 22058
22057 HHAMRELSRRYGPVMLLRLGHVRTLVLSSPEAAREVMKTHDAAFATRAVTPTASILTYGA 21878
21877 RDIVFAPFSKHLRELRKLCTLELLSPRRVRSFRHVRDEEAARLARSVAAAAPAVVNVSEL 21698
21697 VKIMANNIIMTAIIGDTCPQRDEYLEALDKTMDLMNGFNLIDLFPGSRLARVLGARSLRA 21518
21517 TKRVHQKLHQITDTIIQGHEIIEDGSVGDDTIQETVGTHNMHGHGHKCEDILDVLLRFHR 21338
21337 DGGLGITLTKEIVSAVLF 21284
20770 DLFAAGSETTSTTIIWAMSELVRTPHVMERAQSEIHQVLQGKTVVSEADIEGRLHYLQLV 20591
20590 IRETLRLHPPVPFLIPRLCSEANSKIMRYNIPQGAMVLVNISAIGRDEKIWKNANEFRPE 20411
20410 RFKDDMVDFSGTDFRFIPGGAGRRMCPGLTFGLSNIEIALASLLYHFDWKLPNDASSCKL 20231
20230 DMRETHGVTARRRTELLLKATPLYT 20156

>aaaa01002645.1a $PI (indica cultivar-group) sequence gap at 950 sequence 
similarity stops at 236 (80% identical to AAAA01002645.1b)
ortholog to AP005385.1b $P 99% 
949 PLMRLQLGGVPVVVASSPDAAREVTCTHDAAFASRPWPPTVRRLRPHREGVVFATYGAM 773
772 WRQLRKVCIVEMLSARRVRSFRRVREEEAASLAAAVAASLSSPPARRDAVNVSALVALAV 593
592 ADATMRVVIGDRLERREEFLESMTEAVRSFTGFSLDDLFPSSRIAAAVGGMTRRAEASHR 413
412 KGNELIESAIRQHEQVRDAMAAQGGGGAMEEDLLDTLLRIQKEGALDMPLTMDNIKAVI 236

>aaaa01002645.1b $FI (indica cultivar-group) no introns 40% to 71B23
ortholog to AP005385.1a $F 99%
2048 MEQVAYWFICACAFLALVLLVRLGAARRDVVRLPPGPWRLPVVGNLHQLMLRGPLVHRTMADLA 2239
2240 RGLDDAPLMRLQLGGVPVVVASSADAAREVTRTHDLDFASRPWPPTVRRLRPHREGVVF 2416
2417 APYGAMWRQLRKVCVVEMLSARRVRSFRRVREEEAARLVASIASSSSSSPTGHDGGAAP 2593
2594 AVNVSAPIAAAVADATMRAVIGDRFERREEFLESITEAVRSFTGFSLDDLFPSSRLAAAV 2773
2774 GGMTRRAEASIRKGHQLMDSAFRQHQQLRDAMAAQPHLDDCAMEEDLLDTLLRIQKEDNL 2953
2954 DVPLTTGNIKAVLLDIF 3133
3134 GARSDTSSHMVQWVLSELMRNPEAMHKAQTELRSTLQGKQMVSEDDFASLTYLKLVIKET 3313
3314 LRLHPMVPLLLPRECRQTCKVMGYDVPQGTTVFVNVWAINRDPRHWDEPEVFKPERFHSG 3493
3494 KIDFKGANFEYIPFGAGRRICPGMTFGHATVELMLAMLLYHFDWELPKGVAPNELDMTEE 3673
3674 MGITVGRKNALYLHPIVRVSLEQASMS* 3757

>aaaa01002713.1 $FI (indica cultivar-group) runs off end of clone 
aaaa01010047.1b (indica cultivar-group) ortholog to AL772426.1 AF140486
new 81 subfamily
3811 MEISQAFVFASLLLLLLLTWLLFHLLSYQAPPPNGDGGRRIPSPPALPVVGHLHLLKKPL 3632
3631 HRSLAALAARYGGGAGLLLLRFGARPVVLVSSQAATDECFTAHDAALAGRPGLASRRLL 3455
3454 TDGCPTIATAGHGARWRHLRRLATVHALCARRLAATSPARDAEARAMAARLYSSSSSSS 3278
3277 AASAVVVGVKPAAYGFVASVIMTMVAGERMAEEDVLRFKAITEAGLAAAGAANRQDFLPF 3098
3097 LRLLDFGRARRRLAGIAKERHDFGQRIVDEYRRRHRRRLAVAADDSSSSPPRRTVIGDL 2921
2920 LRQQESSPESYADEVIRTVCL 2858 (0?)
5877 SLLQAGTDTSASTIEWAMALLLNNPDVLRKATDEIDSVVGMSRLLQEPDLANLPY 6041
6042 LRCIITETLRLYPLAPHLVPHEASRDCMVAGHVIARGTMVLVDVYSMQRDPRVWEDPDKF 6221
6222 IPERFKGFKVDRSGWMMPFGMGRRKCPGEGLALRTVGMALGVMIQCFQWERLGKKKVDMS 6401
6402 EGSGLTMPMAVPLMAMCLPRVEMESVLKSL* 6494

>aaaa01002757.1 (indica cultivar-group) orth of AC104473.1 chr 3 77% to 90B
19732 RACRYGKIYRSSLFGERTVVSADAGLNRYILQNEGRLFECSYPRSIGGILGKWSMLVLVG 19553
19552 DPHREMRAISLNFLSSVRLRAVLLPEVERHTLLVLRAW 19439
16638 AYFFLFYVDISSMMFTVYFYCSLQSRAAILGVIERKMEERVEKLSKEDASVEQDDL 16471
16470 LGWALKQSNLSKEQILDLLLSLLFAGHETSSMALALAIFFLEGCPKAVQELRVQRIT 16300
15284 QVINETLRLGNVVRFLHRKVIKDVHYKGYDI 15105
15104 PSGWKILPVLAAVHLDSSLYEDPQRFNPWRWKVSR 15000
14088 SSSFMPYGGGTRLCAGSELAKLEMAVFLHHLVLNFRWELAEPDQAFVFPFVDFPKGLPIR 13909
13908 VHR 13900

>aaaa01002827.1 $FI (indica cultivar-group) one frameshift
12880 MAFFLVACLPWVCFILLSLYVFQLFADARRRLPPGPWPPKPLIGDLLALGKGDQQ 12716
12715 HRSLARLADRYGPVMSLRLGTVLTVVVSTPDAMREIFHKNKDNLAGRPTADAFNAMGHSA 12536
12535 NSLLGLEHPGVRWRAIRRFSTAELLAPRRLAALQPLCRDKVRGLVRGVSELAARGEPVHV 12356
12355 RRVALDMALSLI (fs) 12320
12322 LSAIYSVDLDPESTAVFRSVVEEAMLLIGTANLSDLFPAIAALDLQGVRRRVA
      ELFTITYRQYDEQVARRRPERDAGEAGKNDLLNVVLDMEREWQQKGSVLSHDAMRVLFT (0) 
8887  DLYGAGASTTSVLIEWAIADLLQNPESMRKIKEEITNVIGTNAQIQESDIARLPYLQAVV 8708
8707  KETLRLRAVAPLVPRRAEATIEVQGFTIPKGTNVILNLWAINRDARAWNDPDKFMPERF 8531
8530  IGNDINYLGQNFQFVPFGVGRRICLGLPLAQKVMYLVLGTLVHQFEWTLPEELKDTGIDM 8351
8350  TEKCGMVLCLANPLKVMAKKM* 8285

>aaaa01002847.1a $FI (indica cultivar-group) ortholog to AC087550.2a 99%
14507 MDDKLLQLLLLALAVSVVSSIVTISKLVYRATNKPRLNLPPGPWTLPVIGSLHHLVMRSP 14328
14327 SIHRSMRALAEKHGPLMQVWLGEVPAVVVSSTEAAEEVLKNQDARFADRFITTTLGAI 14154
14153 TFGGGDLAFAPYGERWRHLKMLCTQQLLTAARVRSFRRIREEEVARLVRDLAASAGGGSE 13974
13973 VAVNLSERVARLVNDIMVRCCVGGRSKHRDEFLGALCTALSQTSWLTVADLFPSSRLARM 13794
13793 LGTAPRRALASRKKMELILEQIIQEREEMTTDRSGDGEAGPTNECFLDVLLRLQK 13629
13628 EGDTPIPITMELIVMLLF 13575
12405 DIVSGGTETSTIVLNWTMAELIRTPRVMAKAHAEVRQTFQAKSTITEDDDISGL 12244
12243 TYLKMVIKESLRMHCPVPLLGPRRCRETCKVMGYDILKDTTVFVNVWAMCRSSIYWNDAE 12064
12063 EFKPERFENKCIDYKGSNFEFVPFGSGRRMCAGMNLGMADVEFPLASLLYHFDWKLPDGM 11884
11883 SPEDIDMQEAPGLFGGRRTSLILYPITRVAPSDLQVI 11773

>aaaa01002847.1b $FI (indica cultivar-group) ortholog to AC087550.2b >99% 1 diff
21763 MEDKRPLALTVLSVSVLIAVVISKLVSYATKPRLNLPPGPWKLPVIGSLHHLVGSHAIHR 21584
21583 SMRALAEKHGRHHLMQISLGEVFAVVVSSPEAAEEILRNQDVTFADRFLSTTIGVITFGG 21404
21403 NDMAFAPYGERWRQLRKLCTLELLSAARVRSFRRIREEEVARLVRDLAASAAAGEAVNLS 21224
21223 GRIAKLINDVVVRCCVGGRSEHRDEFLDALRTALDQTTWLTVADVFPSSKLARMLGTAPR 21044
21043 KALASRKKIEHILEQIIQERKRIMDRSSHGGDGDGEAMNTSECFLDVLLRLQKDGNTPIP 20864
20863 ITNEVIVVLLF 20831
18797 DMFSGGSETSSSTLIWTMAELIRKPKVMAKAHVEVRQAFQGKNTITEDDGVNELTYLKMV 18618
18617 IKESLRMHCPVPLLGPRKCRETCKVMGYDIPKDTTVFVNAWAICRDPKYWDDAEEFQPER 18438
18437 FENKSIDFKGSNFEFLPFGSGRRMCAAMNLGIANVELPLASLLYHFDWKLPDGMMPEDVD 18258
18257 MQDAPGILVGKRSSLIMCPVTRVAPSNPQVIAS 18159

>aaaa01002889.1 i (indica cultivar-group) ortholog of AL606442.1 $F >99% 1 diff
10926 MASLMEVQVPLLGMGTTMGALALALVVVVVVHVAVNAFGRRRLPPSPASLPVIGHLHLLR 11105
11106 PPVHRTFHELAARLGPLMHVRLGSTHCVVASSAEVAAELIRSHEAKISERPLTAVARQFA 11285
11286 YESAGFAFAPYSPHWRFMKRLCMSELLGPRTVEQLRPVRRAGLVSLLRHVLSQPEAEAVD 11465
11466 LTRELIRMSNTSIIRMAASTVPGSVTEEAQELVKVVAELVGAFNADDYIALCRGW small seq gap
      DALLEEMIRHKEEARMRKKTDTDVGSKDLLD 11825
11826 ILLDKAEDGAAEVKLTRDNIKAFII 11900
11999 DVVTAGSDTSAAMVEWMVAELMNHPEALRKVREEIEAVVGRDRIAGEGDLPRLPYLQAAY 12178
12179 KETLRLRPAAPIAHRQSTEEIQIRGFRVPAQTAVFINVWAIGRDPAYWEEPLEFRPERFL 12358
12359 AGGGGEGVEPRGQHFQFMPFGSGRRGCPGMGLALQSVPAVVAALLQCFDWQCMDNKLIDM 12538
12539 EEADGLVCARKHRLLLHAHPRLHPFPPLL 12625

>aaaa01002943.1 (indica cultivar-group) orth AP003232.1h $F chr 1 98%
20140 LSILPLLYFLCQRNDPKKQPHAHGLKSYPVVGIVPHFTKNKDRFLEFTTEIMK 20298
20299 RSPTQTMSFKALGLTGGGVITANPANVKYTLKTNFGNYPKGELAVSMVVDFLGHGIFNSD 20478
20479 GEQWQWQRKAASYEFNKRSLRNFVVDTVRSEVVERLLPLLERAERDGRTLDVQDVLERFA 20658
20659 FDNICQVAFDEDPACLAEDSMARP
20742 FMRAFNDAQIAVRDRFMSPVKSLWRFKRLFNMEPERRMREALATIHGFAERIVRERRERG 20921
20922 KAGLARSDDFLSRFAASGEHSDESLRDVVTNFLLAGRDTTSSALTWFFWVLSGRP 21086
21087 DVEDKIVRALHAVRRASGSTSDATFSFDRADR 21182

Alt. Ihelix to PKG region orth AP003232.1h $F 98%
21223 SDDFLSRFAASGEHSDESLRDVVTNFLLAGRDTTSSALTWFFWVLSGRPDVEDKI 21387
21388 VRALHAVRRASGSTSDATFSFDELRDMQYLHAAITESMRLYPPVAMDTHSCKEDD 21552
21553 FLPDGTFVGKGWLVTY*AYAMARVET 21630

>aaaa01002989.1 $FI (indica cultivar-group) 91% to AP004233.1 
6020 MEQAAGLVYQLFQQEMFPWTFSVLALFPFLLL frameshift
     SLHYLATNNRTPTTCKETKNHHPPPPSPPRLPIIGHLHLIGDLLHVSLRELA 5770
5769 HRYGPDLMLLHLGQVP (?)
5107 NLIVSSPRAAEAVLRTHDLVFVSRPYSLIADILLYGPSDIGLSPYGEQWRQSRRIVTTHL 4928
4927 LTNKKVRSYRVAREEE 4871 (0?)
4088 VHKVMAKVHELSTKGMAVDMTELFSTFSNDLICRLVSGKNFQGDDGRNKLFRQLFKANS 3909
3908 VLLAGFNLEDYYPSLARLKAVSRVMCAKARKTRKLWDELLDKIIDDRMSKQQCEHDRGND 3729
3728 DQDEMDFVDVLLLQERGITREHLKAIL 3648 (0?)
3552 DMFQAGTETTSVVLVFAMAELMHKPHLMAKLQAELRTNISKQGQELLTECDLTNMTYLNA 3373
3372 VIKETLRLHPPTPLLLPHLAMADCDIDGYTVRSGTRVIVNAWAIGRNSESWEAAEEFLSE 3193
3192 RFVDGGSAANVDLTGTDFQFLPFGAGRRICPGINFASASMEIILANLLYHFDWDVPAEAA 3013
3012 IDKAGIDMAEAFGLSVQLEEKLLLVPIEYKDSM 2914

>aaaa01002996.1a $FI (indica cultivar-group) ortholog of AP004001.d >99%
13279 MEEPTSCYGYYHYLALAVAVLVLVRVTRTRGGGSDGVRLPPGPWRLPVIGSLHHLAGKPL 13458
13459 VHRALADLARRMDAPLMYLRLGEVPVVVATSPGAAREVMRTHDVAFATRPVSPTVRIMTA 13638
13639 DGEGLVFAPYGALWRQLRRIAILELLSARRVQSFRRVREEEAARLAAAVAAAAPHGEAAV 13818
13819 NVSERIAVLIADSAVRAMIGDRFKKRDEFLEALAEGLKLVSGFSLADLFPSSWLASFVTG 13998
13999 AARRAQENHRKNFELMDRAIEQHQERRAAAAAASGDVVEDDDLVDVLLRIQKGGGLDVPL 14178
14179 TMGIIKAVIL 14208
14345 DLFSAGSETSATTIQWAMSELMRNPRVMKRAQAELRDNLQGKPKVTEEDLADLNYLKLII 14524
14525 KETLRLHLPAPLLLPRESRESCKIFGYDVPKGTTVFVNAWAIGRDPKYWDDPEEFKPERF 14704
14705 EDSKIDFKGLDFEFLPFGSGRRMCPGIMFAQPNIELALATLLYHFDWSLPAGVKPSELDM 14884
14885 TEEMGITVRRKNDLYLHAVVRVPLHATTP 14971

>aaaa01002996.1b $FI (indica cultivar-group) ortholog of AP004001.1e 99%
16497 MAQDVAEYLSIFLALVVAPLLLLRVARRARGNGAGRPRLPPGPWRLPVIGSLHHLMGKPQ 16676
16677 VHRAMADLARRHGAPLMYLRLGEVPFVVASSPDAAREVLRAQDANFASRPWSPTLRVMMA 16856
16857 DGKGLTFARHGAHWRLRKICVLELLGPRRVRSFRRVREEEVARLLAAVAAAAAAGADAVV 17036
17037 NVSERAAVLVTDTTVRAMIGDRFEMRDEYLEGVAEVGKLLLGLSLGDLFP 17186
17187 SSRLASLVSGTARRAAASHRKMFELMDCAIRHHQERKAAMDADEDILDVLLRMQKEGGHD 17366
17367 APLTMGDVKDTIL 17405
17534 DLFAAGTETSTATLQWAMSEVVRNPRIMQKAQAELRNKLQGKPSVTEDDLVGLTYLKLVI 17713
17714 KETLRLHPAAPMLVPRECGESCKVLGYDVPRGTNVLINAWAIGRDPNYWDDTETFKPDRC 17893
17894 ENNKYDFRGTDFEYIPFGSRRKICPCPAFTHAILELALAALLYHFDWELPCGVAQ 18058 frameshift
18055 SGEVDMAEETGVVVRPKNDLYLRPVVRVPPGAASSGNGGT 18174

>aaaa01003020.1 $PI (indica cultivar-group) ortholog of AP004796.1 100% AP004991.1 100%
1825 VDSYEHIRAEEIRALVRNLFGCASHAVAVRECLVNATLRNILHMSVGEKWSGVYGSADGEVFRR 2016
2017 TESSAVTMEWAMAELLRCPDAIATATDELDRVVGRARWVAESDLPDLPYVDAVVKGALRL 2196
2197 HPVGPLLVPHHAMEDTVAACNDVPVGTHVLVNVCAIARNPTSWPDRLDVFLPERFLPGGGA 2379

>aaaa01003099.1a (indica cultivar-group)  Nterm aa 494
ortholog of AP005448.1a 100%
7681 TISDTMWLTTVALLLTTVVIWTALQKRKRGEACPAAVAPPPIVQGTALVRFLRAMARDG 7857
7858 PLEVIREQLAKLGSVFMASAPLGLFKVTFLVGAEL 7962

>aaaa01003099.1b (indica cultivar-group)  Nterm aa 3160
ortholog to AP005448.1b 100%
10626 VTSSTIARGAMSWVAATVALLLTTAVILTALQKRKISSPAAAAPPVVRGAGLVRFA 10793
10794 RAMARDGPLEAIREQQAKLGSVFTAIAPFGLFKVTFLIGPEVSSHFYLAPESEMGQGSIY 10973
10974 RFTVPLFGPEVGYAVDPDTRAEQMRLFWDVLKPRSIEARVGAMAEEVQ 11117

>aaaa01003099.1c (indica cultivar-group)  Nterm aa 61160
ortholog to AP005448.1b 100%
11261 DGPLEAIREQQAKLGSVFTAIAPFGLFKVTFLIGPEVSSHFYL 11437
11438 APESEMGQGSIYRFTVPLFGPEVGYAVDPDTRAEQMRLFWDVLKPRSIEARVGAMAEEVQ 11617

>aaaa01003099.1d (indica cultivar-group)  Nterm aa 61160
ortholog to AP005448.1b 100%
11761 DGPLEAIREQQAKLGSVFTAIAPFGLFKVTFLIGPEVSSHFYL 11937
11938 APESEMGQGSIYRFTVPLFGPEVGYAVDPDTRAEQMRLFWDVLKPRSIEARVGAMAEEVQ 12117

>aaaa01003099.1e (indica cultivar-group) nearly  gene, runs off end
ortholog to AP005448.1b $F 99% plus one frameshifted region
21127 LQKRKISSPAAAAPPVVRGAGLVRLRARHGEGRAAGGDPRAAGEAGERVTAIAPF 20963
20962 GLFKVTFLIGPEVSSHFYLAAESEMGQGSIYRFTVPLFGPEVGYAVDPDTRAEQMRLFWD 20783
20782 VLKPRSIEARVGAMAEEVQ 20726 (0?)
18574 NYFSRWGEQGTVDLKKELERVLMLIASRCLLGREVRESMVDEVYELFRDLDNGLHLIS 18401
18400 TMLPYLPTPAHRRRDRARQRLGEIFTEVIRSRRNSGTAGNGDDVLQRLIDGRYKD 18236
18235 ERALTDVEVVGLLVALVFAGKHSSSSVSTWTGINLLSHPNHLAAVIAEQDRLMASRARTD 18056
18055 DDHDRVNYDTVQEMTTLHRCIKEALRLHPPAVAMFRQARKHFTVQTKEGKEYTIPGGHTV 17876
17875 LSTILVNHHMPNVYKDPHVFDPSRFARGRGEDKAAGPFSFLAFGAGRHSCAGESFAYTQI 17696
17695 KVIWSHLLRNFELKMVSPFPETSWRMVTPEPKGTVMISYRRR 17570

>aaaa01003110.1 $FI (indica cultivar-group) ortholog of AC073867.4 $F 99%
15437 MADMVKFTMEWLQDPLSLAIVVTVAVLIMRMQRRRAAPFPPGPKPLPIVGNMAMMDQLTH 15616
15617 RGLAALAKEYGGLMHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATTAIAYLTYDRA 15796
15797 DMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRDESAALVRAVAASRGEAAVNLGELI 15976
15977 FNLTKNVIFRAAFGTRDGEGHDEFIAILQEFSKLFGAFNIGDFIPWLSWADTNGINARLV 16156
16157 AARTALDRFIDKIIDEHMERGKNPDDADADMVDDMLAFLAEAKPHAGKAAAAAAAAGDGA 16336
16337 DDLQNTLRLTRDNIKAIIM 16393
20528 DVMFGGTETVASAIEWAMAEMMHSPDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRC 20701
20702 VIKETLRLHPPIPILLHETAADCLVAGYSVPRGSRVMVNVWAINRDRAAWGPDADAFPPS 20881
20882 RFAAGAAAEGLDFRGGCFEFLPFGSGRRSCPGMALGLYALELAVARLAHGFNWSLPDGMK 21061
21062 PSELDMSDIF 21091

>aaaa01003137.1 $FI (indica cultivar-group) ortholog to AU173996.1
44% to 76C4
2741 MDVNQLWLLWATLAVSLLYYISNRRRRVGGRRRCPPGPMPLPLVGNLLNLRGHLPPALAR 2920
2921 LARTYGPVMMLKMGLTTTVVISSGDAAREAFTKHDRHLAARTVLDVTRSLDFADRSMIWL 3100
3101 PSSDTVWKTLRGVTAASIFSPRGLAALRGVRESKVRDLVGYFRGRAGEVVDVRHAVYGCM 3280
3281 LSLVSSAFFSVDVVDLSAESENEFRQSMTFLMEVVSKTNVSDFFPFLRPLDLQGWRRLTE 3460
3461 RYLGRVTCFLDDVIDRRFAADASANRHGDFLDSLLDLVSTGKIVRENVTTILLDVFIAGS 3640
3641 DTITATVEWAMAELLRNPSEMAKVRAEMDGALGGKKTVDEPDIARLPYLQAVVKEAMRLH 3820
3821 PAAPLLLPHRAVEDGVEVGGYCVPKGSMVIFNVWAIMRDPAAWERPEEFMPERFIRRGDD 4000
4001 DEVDFWGKTFEFIPFGSGRRVCAGLPMAERVVPFMLASLLRAFEWRLPDGVSAEELDMRH 4180
4181 RFTIANFRAIPLKAVPVVVS* 4243

>aaaa01003187.1a (indica cultivar-group) orth of AP003278 $F chr 1, 82% to 72A22
12486 FAGADTTSVLLTWTMLLLSMHPEWQDRAREEILGLCGKNKPDYDGLSRLKIVSIL
      VTMILYEVLRLYPPFIELTRKTYKEMEIGGIT 12130
12129 YPAGVIINLPVMFIHHDPEIWGSDVHEFKPERFSEGISKASKDLGAFLPFGWGPRICIGQ 11950
11949 NFALLEAKMALCLILQRLEFE 11887

>aaaa01003187.1b (indica cultivar-group) orth of AP003278 $F chr 1, 82% to 72A22 these two seem identical
20687 FAGADTTSVLLTWTMLLLSMHPEWQDRAREEILGLCGKNKPDYDGLSRLKIVSIL
      VTMILYEVLRLYPPFIELTRKTYKEMEIGGIT 20331
20330 YPAGVIINLPVMFIHHDPEIWGSDVHEFKPERFSEGISKASKDLGAFLPFGWGPRICIGQ 20151
20150 NFALLEAKMALCLILQRLEFE 20088

>aaaa01003216.1a (indica cultivar-group) runs off end of clone (partialI)
ortholog of AP005419.1
2851 DLIAGGTESSSETIEWAISELLRKPEMFAKATEELDRIVGHRRWVNEKDILDLPY 3015
3016 IEAIVKETMRLHPIGPLLAPRLSREDTSVGGYDIPTGTRVFVNVWAIARDPTLWDASEEF 3195
3196 VPERFLGKKIDVKGQDFELLPFGSGRRMCPGYNLGLKVIQLSIANLLHGFTWRLPKDMVK 3375
3376 EDLSMEEIFGLSMPRKFPLEVVVEPKLSSHLYKGD* 3483

>aaaa01003216.1a (indica cultivar-group) ortholog to AP005570.1a >99%
2851 DLIAGGTESSSETIEWAISELLRKPEMFAKATEELDRIVGHRRWVNEKDILDLPYIEAIV 3030
3031 KETMRLHPIGPLLAPRLSREDTSVGGYDIPTGTRVFVNVWAIARDPTLWDASEEFVPERF 3210
3211 LGKKIDVKGQDFELLPFGSGRRMCPGYNLGLKVIQLSIANLLHGFTWRLPKDMVKEDLSM 3390
3391 EEIFGLSMPRKFPLEVVVEPKLSSHLYKGD* 3483

>aaaa01003216.1b (indica cultivar-group) ortholog to AP005570.1c >99%
identical to exon 2 of AAAA01003216.1d (duplicate)
6615 DLIAGGTESSAVTVEWALSELLKKPEVFAKATEELDRVVGRGRWVTEKDVPSLTYVDAI 6439
6438 VKETMRLHPVAPMLVPRLSREDTSVDGYDIPAGTRVLVSVWTIGRDPKLWDAPEEFMPER 6259
6258 FIGNKIDVKGQDFELLPFGSGRRMCPGYSLGLKVIQLSLANLLHGFAWRLPDGVTREQLS 6079
6078 MEEIFGLSTPRKFPLEAVVEPKLPAHLY 5995

>aaaa01003216.1c (indica cultivar-group) ortholog to AP005570.1b >99% exon 1
9579 MEFLLWVSYLTITLATILLFLRTLILRHNRRVYNLPPGPKPWPIIGNLNLMGSLPHRSIH 9400
9399 SLSKKYGPLMHLRFGSFPVVVGSSVEMAKFFLKTHDVVFADRPKTAAGKHTTYNYSDMTW 9220
9219 SPYGAYWRQARKVCLAELFSAKRIESYEHIRREEVRALLRDLHAASGRVVALKDYLSAAS 9040
9039 LNVISRMVLGKKYLEREVVHEGEVVTTPERFRWMIDELFLLNGVLDIGDSIPWLGWLDLQ 8860
8859 GYIRRMKKLSKMFDQFLEYVLDEHENRMCREGESFVAKDMVDALLNVASDPSLEVKFSRD 8680
8679 SVKAFTQ 8659

>aaaa01003216.1d (indica cultivar-group) ortholog to AP005570.1c >99%
14529 MLPPWASFVAVVLATVLFLKTVLGRSRRVYNLPPGPKPWPVIGNLNLVGTLPHRSIHNLS 14350
14349 KKYGPLMYLRFGSFPVVVGSSVEMAKFFLKTHDVVFTDRPKTAAGKHTTYNYSDITWSPY 14170
14169 GAYWRQARKMCLTELFSAKRLESYEYIRGEEVRALLRDLHGAAGGVVVLKDYLSTVSLNV 13990
13989 ITRMVLGKKYLDKDAGGSVTTPEEFKWMLDELFLLNGVLNIGDSIPWLDWLDLQGYIKRM 13810
13809 KKLGKMFDRFLEHVVDEHNERRRREGESFVAKDMVDVLLQFADNPNLEVKLKREGVKAFTQ 13627
12917 IDRYVQDLIAGGTESSAVTVEWALSELLKKPEVFAKATEELDRVVGRGRWVTEKDVPSLT 12738
12737 YVDAIVKETMRLHPVAPMLVPRLSREDTSVDGYDIPAGTRVLVSVWTIGRDPKLWDAPEE 12558
12557 FMPERFIGNKIDVKGQDFELLPFGSGRRMCPGYSLGLKVIQLSLANLLHGFAWRLPDGVT 12378
12377 REQLSMEEIFGLSTPRKFPLEAVVEPKLPAHLY 12279

>aaaa01003237.1a (indica cultivar-group) 77% to AP003850.1 $F chr 7 gene 2
259 VFTAQSVTHLDANIFPEPSNFDPARFENNSSIPPYCFVPFGGGPRMCPGNEFARTETLV 435
436 TMHYLVTQFRWK 471

>aaaa01003237.1b (indica cultivar-group) orth of AP003850.1 $F chr 7 gene 3
5921 LALLIPILLHVVIRRKYSSYNLPPGSLGFPVIGQTISLLRALHNNTDYQWCQDR 6082
6083 IEKYGAVSKMSLFGSPTVLLAGPAANHFVFSNQDLIFTETKAINALVGRSILTLSGE 6253
6254 ELKQVRGALHGYLRPEMVTKYMRKMDEEVRRHIDLNWVGHKTVT
     VASLARRLAFDIICSVIFGQGVGPIREALAADFETMVKAM 6613
6614 LSIPVNIPFTKFNKGLNGSRRIRKVLRQIARDMEGALQQGYSSSADDFFTYMLVLRSKGT 6793
6794 HTLTVEDIVDNAIVLLAAGYETSSVLITFLIRCLANEPDIFGKITD
     EQEEIARSKGPNEPLTWDDVSRMKYTWKVALETLRTISPI 7150
7151 FGSFRTAIKDIEYQGYHIPKGWQVSI 7228
7787 HLDGKFFNDPIKFDPTRFDNQSLIPPYCFVPFGGGPSMCPGNEFARTETLVAMHYLVRQ 7963
7964 FRWK 7975

>aaaa01003237.1c (indica cultivar-group) 73% to AP003850.1 $F chr 7 gene 2
18910 IALFIPILLHLVTRFKYSSYNLPPGSLGFPFVGQSISFLRALRSNTDHQWYQGR 19071
19072 IGKYGPVSKMWLFGSPAVLMAGPAANRFIFSNKDLLF 19182
19881 LTLDIICSVIFGQEAGSVREALATDFPAMVRAALSIPVKIPFTRFSRGLSASQRIRELLR 20060
20061 GIARERETLLQQQQAHGASAADDFFTYMLALRAEGAHSLTVEDIVDNAIFLLIAGYETTS 20240
20241 VLITFMLWHLDKEPEVLSKITEGEQL
      IARNKGPEDALTWDDVSRMKYTWKVAMETLRTIPPIFGSFRTATRDIEYQGY 20569
20570 HIPKGWMV 20593

>aaaa01003239.1a $PI (indica cultivar-group) exon 2 ortholog to AP004346.1c 96%
2517 DAFAGGIDTTVVTTTWIMSELMRNPTVMQ 2431 frameshift
2432 KAQAEVHNIVKNKSKVYEENIQNMKYLKMIIKENCKLHPPGTLLIPRHTMKTCTIGGYN 2253
2252 VPSKTRIYVNVWAMWRDPNIWDNPEQFYLERFEDKGIDFRGSHFELLT 2109 (?)
1820 FGSGQRICPGIAMGVANVELVVANLLYCFDWQLPKGTKEEDIDMDEIG*LAFRK 1659

>aaaa01003239.1b i (indica cultivar-group) exon 2 ortholog to AP004346.1b 95%
17640 LQDAFVGGIDTTAVTTTWIMSELMRNPRVVQKA*AEVHNIVKNKSKVCKEDIQNMKYLKM 17461
17460 IIKENFRLHPPGTLLIPRQTMKTCTIGGYSVPSETRIYVNVWAMGRDPNICDNPEQFYPE 17281
17280 RFEDKGIDFRGSHFELLPFGSGQRICPGIAMGVANVELVVANLLYCFDWQLPKGMKEEDI 17101
17100 DMDEIGQLAFRK 17065

>aaaa01003282.1 (indica cultivar-group) 87% to AL607001.1 chr 4, gene 2
15979 YAALCVVTLLIGWLTHWVYKWMNPPCNGRLPPGSMGFPVVGETFQFFRASPSVDMPSYYK 15800
15799 QRLE 15785
15612 RYGPLFKTSLVGQPLVVSLDPEVNRFIFQQEGKLFRSWYPETANNIFGKKSLTTYNGTVH 15433
15432 KFIRSFASKLFGLENLKESLLPELENSMRESFASWASKPRIEVQDGVSD
      MIFDLVAKKLIGLNVTQSRELRKNFQEFFQGMVSFPIYFPGTSFYRCMQ 14961
14802 QGRKNVRNTLTDVMKERLSAPEKKYGDLVDLIVEELQSEKPVIDENFAIDALAALLFTSF 14623
14622 ATLSSTLTVALKFLNDNPKIVEEL 14551
14129 EEHDVILKKREVMNSGFTWEEYKSLKFTTQVIS 14031
13755 YTIPSGWLVMISPMAVHLNPELFEDPLKFDPWRWTVSGKHF 13633
MPFGGGIRLCLGAEFSKLFIALFLHILLTEYR
WKEIEGGEVLRISEIMFPQGYHIQL 13182

>aaaa01003340.1 $FI (indica cultivar-group) ortholog of D48181 (less the Nterm) about 50% to 87A2
AAAA01009800.1 (indica cultivar-group) ortholog of D48181 Nterm
4887 MAVLASWLIRLVSLKWNSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNR 5081 (2)
11460 YGPVFRTNMVGQDLIVCLDPEVNSFVFQQEERLFQCWYPDSFMRIIGADNIITTLGSSHK
      YIRNLILRLFGPENLRRAMLQDVHRTAQASLLSWLDRPSIELKDAVSS (0?)
      MIFSVTAKKLISYDSLASDGKMWKQFDAFIRGLLAFPIGIPGTAFYKCMQ (?)
Extra 25aa exon here? See 87A2
      SIDFIDVLLEELNEEKPLISENVALDLIFLLLFASFETTASAITAVVRFLTDNPEALQEL (0?)
      EEHDNIQKRRVDLNSEITWEEYKSMKFTSH (0?)
      VIHEALRLANIAPVMFRKATEDVHIK (1?)
13238 GFFIPKGSKIMICPSTVHLNPMIYKDPNIFNPWRWK 13345 (0)
13765 DTAEPTGGASKDFMAFGGGLRLCVGADFAKLQTAIFLHCLVTKYR 13899 (2)
14151 WKAIKGGTMVLGPGLRFPEGFHIQLFPKP* 14240

>aaaa01003402.1 (indica cultivar-group) orth of AP000616.1 $F chr 6 like CYP88
16136 VYRTFMFSSPTILAVTPEACKQVLMDDEGFVTGWPKATVTLIGPKSFVNMSYDDHRRIRK 16315
16316 LTAAPINGFDALTTYLSFIDQTVVASLRRWSSPESGQVEFLTELRRMTFKIIVQIFMSGA 16495
16496 DDATMEALERSYTDLNYGMRAMAINLPGFAYYRALRARRKLVSVLQGVLDGRRAAAAKGF 16675
16676 KRSGAMDMMDRLIEAEDERGRRLADDEIVDVLIMYLNAGHESSGHITMWATVFLQENPDI 16855
16856 FAR 16864

>CYP88A5 AP000616 = aaaa01003402.1 100% to indica seq above
MAAAWAAGDLWVLAAAVVAGVVLVDAVVRRAHDWVRVAALGAERRSRLPPGEMGWPMVGS 125254
MWAFLRAFKSGNPDAFIASFIRR 125323
FGRTGVYRTFMFSSPTILAVTPEACKQVLMDDEGFVTGWPKATVTLIGPKSFVNMSYDD 128171
HRRIRKLTAAPINGFDALTTYLSFIDQTVVASLRRWSSPESGQVEFLTELRRMTFKIIVQ 128351
IFMSGADDATMEALERSYTDLNYGMRAMAINLPGFAYYRALRARRKLVSVLQGVLDGRRA 128531
AAAKGFKRSGAMDMMDRLIEAEDERGRRLADDEIVDVLIMYLNAGHESSGHITMWATVFL 128711
QENPDIFARAKAEQEEIMRSIPAT 128891
QNGLTLRDFKKMHFLS 128939
KVVDETLRCVNISFVSFRQATRDIFVNG 129528
YLIPKGWKVQLWYRSVHMDDQVYPDPKMFNPSRWE 129811
GPPPKAGTFLPFGLGARLCPGNDLAKLEISVFLHHFLLGYX 130056
LKRANPKCRVRYLPHPRPVDNCLATITKVS 130411

>aaaa01003423.1 (indica cultivar-group) 55% to AP003244 $F
10043 FTFLQVINETLRVGNIISGVFRRANTDIHYK
10248 DYTIPKGCKIFASFRAVHLNNEHYENARTFNPWRWQ
      INNKLQNAVGANIFTPFGGGPRLCPGYELARVVVSIFLHHLVTR 10607
10608 FR 10613

>aaaa01003438.1 $FI (indica cultivar-group) ortholog to AP003723.1 100% Cterminal part
AAAA01022256.1 (indica cultivar-group) 100% Nterminal part
1463 MVDMNDVLLVVSAAVLAAMWWRRCSRTGGADGLPPGPPGWPVVGNLFQVILQRRPFMYVV 1642
1643 RDLREKYGPIFTMRMGQRTLIVVTDADLIHDALVKQGAAFASRPEDSPTRLLFSVGKCTV 1822
1823 NSAPYGPLWRALRRNFVAEIVSPPRVKGFSWIREWAVGSHLRRLRAEFAATGAVRMMANC 2002
2003 RLSICSILICICFGAKIPDELIREIEEVLKDVMMMTMPKLPDFLPLLTPLFTKQLAAARE 2182
2183 LRRRQLGCLAPLVRARREFIRGGGERNADGNTVVGGVEMVSAPGEAYVDSLFDLEPPGRG 2362
2363 KRLGEDELVTLCSEVMSAGTDTSATALEWAMMHLVLDAGVQDKLYGEVVSKVGTTARITE 2542
2543 ADVEAMPYLQ 2572
 463 AVVKETFRRHPPSHFVLSHAATRDTELGGYRVPADASVEFYTAWVTENPATWPDPEA 633
 634 WRPERFLEGGEGFDTDITATRALRMMPFGAGRRICPAATLGVLHIQLMLANMVREFRWVP 813
 814 PAGEGPPDPTETFAFTVVMKNPLRAALVERRVGGELATGGGGGAAASA 957

>aaaa01003512.1 i (indica cultivar-group) ortholog to AP004346.1a 95%
6414 SYNYLDVAFAPYSDYWREMRKLFVVELTSVSRVHSFAYARTAEVARLVDTLAASPPGVPF 6593
6594 DISCTLYQLLDGIIGTVAFGKVYGAAQWSTERAVFQDVLSELLLVLGSFSFEDFFPSSAL 6773
6774 ARWGDALAGVERRRRRIFRQVDGFLDSVIDKHLEPERLSAGVQEDMVDALVRMWREQQDR 6953
6954 PSGVLTREHIKAILM 6998
8541 NTFAGGIDTTAITAIWIMSELMRNPRVMQKAQAEVRNTVKNKPLVDEEDIQNLKYLE 8711
8712 MIIKENFRLHPPGTLLVPRQTMQPCLIGGYNVPSGTRVFINIWAMGRDPMIWDNPEEFYP 8891
8892 ERFEDRNIDFRGSHFELVPFGSGRRICPGIAMAVASLELVVANLLYCFDWKLPKGM*EED 9071
9072 IDMEEIGQLSFHRKVELFIVPVKHEQCEP*DQLMGH 9179

>aaaa01006865.1 (indica cultivar-group) orth of AC090482.3 $F 
aaaa01028153.1 (indica cultivar-group) orth of AC090482.3 $F
aaaa01094999.1 (indica cultivar-group) 93% to AC090482.3 $F orth?
aaaa01003531.1 (indica cultivar-group) orth of AC090482.3 $F
 5277 YAALVTAGMAVLATACWLVFVKRNTSRPSEADGRRLPPGSRGFPIIGETLEFLTESPANQ 5456
 5457 LPAFFKRRLDR 5489
445 RYGPIFKTNMIMEDLIVSLDPEVSNFVLQQEEKLFQIWYPGSFMRINGAESIITTHGLLH 266
265 RHIRNLVLRIFGPRNLRQEIIQEMHKTAEASLSSWLNYPSIELKEAVSS 116
18190 MIFSVTAKKLISYDSSTSDGKMWKHYDAFAQGLITLPLCIPGTAFYKCMQ
14945 GRKNVMKMLKEMLNERKKIEGRHESIDFLDVLIEEVKEDNPSMTENTALNLLFSLLFG 14766
14765 SFDTTSSGITGMLKFLTDNPEALRELT 14670
1696 ASKDFMPFGGGLRLCVGAHFAKLQMAVFVHCL 1791

>AC090482.3 $F 45% to 87A2 in the CYP85 clan 2 diffs with AQ868994
       MAVLATACWLVFVKRNTSRPSeadgr (frameshift?) 
135052 RLPPGSRGFPIIGETLEFLTESPANQLPAFFKRRLDR 134942 
116833 RYGPIFKTNMIMEDLIVSLDPEVSNFVLQQEEKLFQIWCPGSFMRITGAESIITTHALLHR 116651
116650 HIRNLVLRIFGPGNLRQEIIQEMHKTAEASLSSWLNHPSIELKEAISS 116519 (0?)
113034 MIFSVTAKKLISYDSSTSDGKMWKHYDAFAQGLITLPLCIPGTAFYKCMQ 112876 (0?)
98384  GRKNVMKMLKEILNERKKIEGRHESIDFLDVLIEEVKEDNPSMTENTALNLLFSL 98211
98210  LFGSFDTTSSGITGMLKFLTDNPEALRELT (0?)
97814  EHNNIRRRRADLNSEITWEEYKSMKFTSH 97704 
97599  VIHEALRLASITPMMFREAIEDVHIK 97519 (1)
96537  GFAIPKESKIMICPSTVHLNPVVYEDPI 96457 frameshift
       TFNPLRWK (0)
95926  DIAEPAGGASKDFMPFGGGLRLCVGAHFAKLQMAVFVHCL 95831
95446  LSTLVSWKAIKGGRMVLSPGLRFLEGFHIQLFPKD* 95339

>aaaa01003554.1 (indica cultivar-group) ortholog to AP005285.1 gene 4
3364 MDTSTLLIALTLVLLLLLLLLLTARRRRSGRPRLRLPPEPAGLPLVGHLHLFRKPLHRTL 3543
3544 ARLAARHGAVFRLRLGSRRVAVVVSSAPAAEECLGAHDVAFAGRPRLPSAGILSYGWSTM 3723
3724 GTAAYGPYWRHVRRVAVAEILSAHRVRQFAGAHDREARATARRLCRAASRQRHHGAGAAA 3903
3904 GRVRVELKSRLFELLMNTMMAMICDKTYYGA (2) 3996
4070 DDDGEVSEEARWFREMVEETMALSGASTVWDFLPAVLRWVDVGGVGRRLWRLRESRTRF 4246
4247 LQGLIDDQRKEMEHDGDGRELPAAAARPRSMIGVLLSVQRQ 4369 100 ns in seq
missing Cterminal 

>aaaa01003568.1 $FI (indica cultivar-group) 
15269 MALSSMAAAQESSLLLFLLPTSAASVFPPLISVVVLAALLLWLSPGGP 15412
15413 AWALSRCRGTPPPPGVAGGAASALSGPAAHRVLAGMSRAVEGGAAVMSLSVGL 15571
15572 TRLVVASRPETAREILVSPAFGDRPVKDAARQLLFHRAMGFAPSGDAHWRGLRRVSAAHL 15751
15752 FGPRRVAGSAPEREAIGARIVGDVASLMSRRGEVPLRRVLHAASLDHVMATVFGKRHGDL 15931
15932 SIQDGELLEEMVTEGYDLLGKFNWADHLPLLRWLDLQGIRRRCNRLVQKVEVF 16090
16091 VGKIIQEHKAKRAAGGVAVADGVLGDFVDVLLDLQGEEKISDSDMIAVLW
16332 EMIFRGTDTVAILMEWVMARMVMHPEIQAKAQAEVDAAVGGRRGGVADGDVASLPYIQ 16505
16506 SIVKETLRMHPPGPLLSWARLAVHDARVGGHAVPAGTTAMVNMWAIAHDAAVWPEPEAF 16682
16683 RPERFSEGEDVGVLGGDLRLAPFGAGRRVCPGRMLALATAHLWLAQLLHAFDWSP 16847
16848 TAAGVDLSERLGMSLEMAAPLVCKAVAR 16931

>aaaa01003683.1 (indica cultivar-group) orth AP000391 $F 1 diff
     GDFLTTAMKDLFGDGIFATDGDMWRHQRKLASYEFSTKVLR 4183
3882 QDLLMRATMDSIFKVGFGFELNTLSGSDESGIQFSKAFDEANSLVYYRFVDIMWKLKR 3709
3708 YLNIGSEAKLKRNIQIIDSFVMKLIHQKR 3622
3278 EDILSRFVLASEQDPGTMDDRYLRDIVLNFLIAGKDTTGNTLTWFFYLLCKNPIVQDKVA 3099
3098 LEIREFVEWSKEDNTIESFTKRLDEGAISKMHYLQATISETLRLYPAVP 2952
2415 QDAKMADEDDVLPNGYRVVKGDGINYMIYAMGRMTYLWGEDAQEFRPERWLVNGVYQQES 2236
2235 PFKFVSFN 2212

>aaaa01003782.1 $FI ortholog of AC068924.9a 99% 5 diffs in two locations
15354 MDNLYLILGAILAAAVVPFILFRGNGGKRGRRLPPGPPAVPLLGSVVLLTKALTDVEPEL 15175
15174 LLQRLIARYGPIVSLRMGTRVSVFVADRRLAHAALVEGGAALADRPGVPASRLLGENDNI 14995
14994 ITRAGYGPVWRLLRRNLVSETLHPSRARLFAPARYWVHRVIVDKLAASGQAPHDVVDTLQ 14815
14814 YAMFCLLVNMCFGERLDEATVRAVEDAQRDLLIYITSQMAVFAYFPAITKHLFRGRLEKI 14635
14634 YALRRRQRELFMPLINARREYKKHGGGEKTTNKETTLEHSYVDTLLDIKLPEDGNRALT 14458
14457 DDEIIKLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEITAKTGDDQPEVTEEDV 14278
14277 HGMPYLRAVVLEGLRKHPPGHFVLPHRAAEDVEVGGYLIPKGATVNFMVAEIGRDEREWA 14098
14097 KPMEFIPERFLPGGDGEGVDVTGSKGIRMMPFGVGRRICAGLSFAMHHLEYFVANMVREF 13918
13917 EWKEVAGDEVEFAEKREFTTVMAKPLRARLVPRRTT 13810

>aaaa01003818.1 (indica cultivar-group) 86% to AP003289 $F similar to 94C1
18138 GSINDDKYLRDIVVSFMLAGRDTVASGLTAFFLLLSDHPEVAAAIRDEVFRVAGGRDPTA 18317
18318 ASFDFDKLKDMHYVHAALYESMRLFPPVQFDSKFAAGEDTLPDGTFVAKGTRVTYHAYAM 18497
18498 GRMESLWGPDCAVFRPERWLSGGRFVPESPYRYPVFQGGVRVCIGKDLAIMEMKAVIVAV 18677
18678 VLSFDVEAVDRSSRRPKFAPGLTATFAGGVPVRVRRR 18788

>aaaa01003868.1 $FI (indica cultivar-group) ortholog to AP004769.1 $F 100%
5261 MEETWLFLLFSISLVAVLLATARRRRSSSIKARLPPGPSPLLFLAKFLRLRRSIFDLGPL 5440
5441 LRDLHARHGPVISIRLFGTTLVFVADRRLAHRAL
5545 VQGGSTFADRPPLPELGRLFTSDTRDINSSPYGPYWRLVRRNLASEALSPARVALFA 5715
5716 PARRRARDVLVRGLRDRGGDGSRPVELRPLLRRAMFELLLYMSLGARLAPEALEEVERLE 5895
5896 LWMLRAFTSFPVFSFFPAITKRLFRNQWAAHVAVRRRVGEIYVPLINARRAGDGDGDDPP 6075
6076 CYTDSLLQLRVAEEGDRPLTDDEIIALCSEFLNAGTDTTVTLVEWIMAELVNRPDIQAKV 6255
6256 HDEVRRRPELTEADLQAMPYLKAVVLEGLRLHPPAQFLLPHGVQSDAEVGGYVVPRGAEL 6435
6436 NVWVAELGRDEVVWTAAREFMPERFMDGGEVEVDVTGSREITMMPFGVGRRMCPGYTVGT 6615
6616 LHAEYLVGSLVRELEWLPETEGEAADMAEELDFTTVMKHPLRARVLPRPSSLY 6774

>aaaa01003879.1 $FI (indica cultivar-group) ortholog to AP004757.1 97%
4645 MAQMLAAFLLDDLISHEHGHESLGAPPQAGTMAWYSLVLMTSLLFPLLVLLVMRCYVTRS 4824
4825 GAKLLDKLPSVPGRLPVIGHLHLIGSLPHISLRNLATKHSPDMMLLHLGAVPTLVVSSSR 5004
5005 VAQSILHTHDDIFASRPYSPIANILFYGATDVGFSPYNEYWWQIKKITTTHLLTVKKVRS 5184
5185 YVSARQREVRIVIARITEAASKHEVVDLTEMLSCYSNNIVCHVVCGKFS*KEGWNQLLRK 5364
5365 LVKVNTSLLGGFNIEDYFPSFTRLAAVRRLLLSCAKAHNINKRWDQLLEKLIDDHTTKHI 5544
5545 RSSSMLNHYDEEAGFIDVLLSIQHEYGLTKDNIKANLAAMLMAGTDTSFIELEYAMAELM 5724
5725 QKPHVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVIKETLRLYPPAPLLMPHLSMSD 5904
5905 CNINGYTIPSGTRVIVNVWALARDSNYWENADEFIPERFIVNTLGDYNGNNFHFLSFGSG 6084
6085 RRIYPGINFAIATIEIMLANLVYRFDWELPADQAAKGGIDMTETFGVAVHRKEKLLLIPH 6264
6265 LHLR 6276

>aaaa01003917.1 $FI (indica cultivar-group) ORTHOLOG OF D39760 43% to 96A1
8147 MNLFDLFFVLQLLLSGVCVLVICYRYQRLKSMKKCSLGVVQWPIVGVLPAIVANMHRLLDGVTFLLAT 8350
8351 SQLNFQCRFWLAGFRFFVTCDPDNVRHIFTSNFDNYPKGDVFADMFDVLGGGIFNTDGER 8530
8531 WRRQRNKAQMLMTTPRFRAFVARSSLDKVEKGLLPFLAHVADARKTCDLQDVFTRWSLDA 8710
8711 TCHLVFGVDPGCLDIGLPEVPFARAMDDVLRTIFLRHTMPVSFWKTMRWLGIGHEKRNAA 8890
8891 ARRTVESFVASAIAKHRADDESKSRQGGGGGGDKQSVADLLSSFLCDDEIAGSADADVYI 9070
9071 RDMAMNLLVAGRDTTSSALSWFFYLLSTNPRVEQKLLQELAPIASRKPQLQQGRLFPGNG 9250
9251 GMVTFDASEVRNLLYLHAALCEAMRLYPPVPLEHKAAVADDVLPSGHEVMAGDKVLVFYY 9430
9431 SMGRMKRVWGKDCREFRPERWITEDGKLRYVPSNKFVAFNSGPRTCLGKEMALVQMKVTA 9610
9611 AAMAWNFAVEVVPGHVVEPRLSVILHMKNGLLVRVKRREPVMNT* 9745

>aaaa01004037.1 $FI (indica cultivar-group) ortholog to AL732378.3 99%
12867 LPPGPRNLPVVGSAHRLVNTLAHRVLRDLADVHGPLMHLRVGQVPVVVVTSKELARD 12697
12696 ILKTHDANFATRPKLVAGGIVAYDWTDILFSPSGDYWRKLRRLCIQEILSAKRILSFEHI 12517
12516 REDEVRMLADEIRAVGPSVAVDLSARLHRITNTIVSRAAFGNKRSNAADFLVAIKQSVIM 12337
12336 ASGFYVPDLFPRFSVLLCWLTGMRRTLHGIRDTIDSILEEIISEKEEAKQQQDNNL 12169
12168 VDVLLSLKDKGDFGFPITRDTIKAIVL 12088
11880 DIFAGGSGTSANAMEWAMSELMMNPRVMNKVQAEIRDAFHGKQSIGEADLRARDLKYLKL 11701
11700 VMKETLRLHPPAPLLVPRESIDACEINGYMIPAKARVIVNAWAISRDPRYWEDAEEFKPE 11521
11520 RFAEGGIDFYGSNYEYTPFGSGRRMCPGYNYGLASMELTLAQLLHSFDWSMPDGATEV 11347
11346 DMTEAPGLGVRRKTPLLLCAAPYVASPI 11263

>aaaa01004091.1 (indica cultivar-group) orth of AC108875.1c $F chr 5 similar to 51A2
12032 GSVIFPYIPIPSHIRRDKAHAKLAKIFSKIVRSRRDSNRPAEQDVLQYLIDSKHRDGSS 12208
12209 TTEQEVTGWIISMVFAGKHTSTNSTTWTGACLLTHDKFLTEALDEQKHMIQKHGDHIDYN 12388
12389 VLLDMDILHCCIKEALRMHPVAPIIYRKAQKSFVVRTREGDAYDIPEGHNLLSP 12550
12551 MIFNNRLPYIYKDPHMYDLDRFAPKREEDKVGGMFSYTSFGGGRHICIGEAYAYMQIKV 12727
12728 IWSHLLRNF 12754

>aaaa01004178.1a  (indica cultivar-group) ortholog of AP003752.1e 97%
3568 ASWAFIAVVVKLVWWPRAITRRLGAQGVAGPGYRFFSGNLSEIRRLRAEGANLVLD 3735
3736 VSSHDFVPIVQPHIRTWIPLY 3798 (1?)
3894 GKTFLYWFGTRPNICLADMNMVRQVLSDRTGMFPKYIDNMQFARLLGKGLVLTDDDEWKR 4073
4074 HYKVVHPAFDMDKLKMMTETISDCARSMMFEWESELGMKGGSTEIELSRWFEELTVDVIS 4253
4254 RTAFGSIYREGKQVFLAQRKLQFLAFSAFLTIQIPGFSYLLTKKNMKTWSLDKKVRSMLM 4433
4434 NIIKSRLTNKETMGYGNDLLGLMLEACVPEHGGSQPQLSMDDIIAECKT 4580
4581 FFFAGHDTTSQLLTWTMFLLSTHQHWMEKLRKEVRMVCNDEVPTGDMLNKLK 4736
4737 LVNMFLLETLRLYGPVSLVTRRDGTDVKLGSIKVPKGTILTIPIATIHRDKEVWGEDA 4910
4911 DEFKPERFENGVLKAAKHPSALLSFSIGLRSCIGQNFAMIEAKTIIAMILQRFSFTLSPK 5090
5091 YVHTPISVITLRPKYGLPMILR 5156

>aaaa01004178.1b  (indica cultivar-group) ortholog of AP003752.1b 99%
10535 GWMVAAAVAAVVASWAFDAVVKLVWRPRAITRRLRAQGVGGPGYRFFSGNLGEIKRLRD 10711
10712 EGAGVVLDVSSHDFVPIVQPHFRKWIPLY 10798
10911 FRIYLRAAGKTFMYWFGARPTICLADVSMVRQVLSDRTGMYPKNVSNPYFARLLGKGLVL 11090
11091 TDGDEWKRHRKVVHPAFNMDKLKMMTVTMSDCAQSMISEWESELGTKGDIVEIELSRRFE 11270
11271 ELTADVISHTAFGSSYKEGKQVFLAQRELQFLAFSTFLSIQIPGSSYLPTKKNLKTWSVD 11450
11451 KKVRSMLTDIIKSRLNNKDVAGYGNDLLGLMLEACAPEHGESQPQLSMD 11597
11598 EIIAECKTFFFAGHDTTSHLLTWTMFLLSTHPEWQEKLREEVAMECDGKVPT 11753
11754 GDMLNKLKLVNMFLLETLRLYGPVAFIQRRVNAELELGGITVPEGTVLSIPIATIHRD 11927
11928 KEVWGEDADIFKPERFENGVSKAGKYPNALLSFSSGPRACIGQNFAMIEAKAVIAMILQR 12107
12108 FSFTLSPKYVHAPTDVITLRPKYGLPMILK 12197

>aaaa01004178.1c  (indica cultivar-group) ortholog of AP003752.1a 100% 
16266 MGYGWALAAVLATWCLLDALSRLVWRPRAVAAALRRQGVRGPGYRLLVGSLGDIN 16430
seq gap
16665 GRVFLYWFGWTPDMCVADVEVAKQVLSDRTGLFPKNVTTPMLLKLFGRGLVLANGDEWQR 16844
16845 HKKVVHPAFNTDKLK
16978 MMTATMAGVARSMVSRWEEKVASHGGKVVIELSSQFEELTADVISHTAFG 17127
      SYAEGKQVFMAIKELQFIAFSSLLS 17204
17205 VQIPGS
17282 RYFPTKKNLKVWRLDRKVRSTLMQIISNRLAAAAKEKAGGGGGGYGEDLLGLMLEASAPP 17461
17462 ELGTKRRQPPVLSMDEIIDECKTFFFAGQETTSHLLSWTMFLLSTHPDWQDKLREEAVRE 17641
17642 CAGAGAGDDDDQLPTYDMLGKLKLVGMQF 17728

>aaaa01004200.1 (indica cultivar-group) 
16322 MAAVQLDFGLLVGFLFLATCLAVAIRSYLRSGGAAIPSPPALPVIGNLHQLGR 16480
16481 GRHHRALRELARRHGPLFQLRLGSVRALVVSSAPMAEAVLRHQDHVFCGRPQQRTARGTL 16660
16661 YGCRDVAFSPYGERWRRLRRVAVVRLLSARRVDSFRALREEEVASFVNRIRAASGGGV 16834
16835 VNLTELIVGLTHAVVSRAAFGKKLGGVDPAKVRETIGELADLLETIAVSDMFPRLRWVDW 17014
17015 ATGLDARTKRTAAKLDEVLEMALRDHEQSRGDDDDGGGGDGEPRDLMDDLLSMANDGGGD 17194
17195 HGHKLDRIDVKGLILV (1)
      NMFIA (frameshift) 
      GTDTIYKSIEWT 17374
17375 MAELIKNPAEMAKVQAEVRHVAAAAHGDEDEDTVAVVREQQLGKMTLLRAA 17527
17528 MKEAMRLHPPVPLLIPREAIEDTVLHGHRVAAGTRVMINAWAIGRDEAAWEGAAEFRPGR 17707
17708 FAGGGDAAGVEYYGGGDFRFVPFGAGRRGCPGVAFGTRLAELAVANMACWFEWELPDGQ 17884
17885 DVESFEVVESS 17917

>aaaa01004251.1 $FI (indica cultivar-group) ortholog of AQ157412 contig
44% to 87A2
2320 MEKSEIFVGAHSYAALCAFTLIIGWLAHWVYRWINPPCNGRLPPGSMGFPIVGETFQFFR 2499
2500 TSPSIDMPIYYKRRLER (2) 2550
2709 YGPIFKTNIGGQHVVISLDPEVNQFIFQQEGKLFQSWFPETTLNIFGKKTLTTYNRTAH 2885
2886 KLIRSFVCKLYGPENVKKSLLPELENSMRESLASWIGKPSVEVNDGVSN (0) 3032
3130 MIFGLAAKHLIGLDITNSGELKKNFQEIFQVMVSIPFPIYFPGTSFYRCMQ (0) 3282
3407 GRRNVWTTLTNVMKKRLSAPGNKFGDLVDLIVEELRSENPTI
     DESFAIDTLSGLLFASFAPLSCTLTTTFKFLNDNPEVFDKLK (0) 3658
3778 EEHEMILKKREGANSGFTWEEYKSLKFSTQ (0) 3867
3965 VVNEINRITTVIPGGFRKALTDVEVN (1)
4133 GYTIPSGWLVMISPMGVHLNPKLFEDPLKFDPWRWT (0)
4343 EEKRISMQRNFMPFGGGIRMCPAVEFNKLFITLFLHIVVTEYR 4471 (2)
4752 WKDIDGGNVKRISEVLVAQEYHIQLVPQT* 4841

>aaaa01004255.1 $PI (indica cultivar-group) ortholog of 73A35P
16157 MDLLFVERLLVGLLAAAVVAIAVSKLRGRKLRLPPGPTPV 16038
16037 PVFGNWLQVGDDLNHRNLAALARRFGDIFLLRMGQRNLVVVSSPPLAREVLHTQGVEFGS 15858
15857 RTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTGKVVQRHRAGWEAEAAAVVDG 15678
15677 LRADPA 15660 (fs)
15660 RRRL*LMMYNNVYRIMFDRRFESADDPLFLRLKALNGERSRLAQSFEYNYGDFIPILRPF 15481
15480 LRGCLRICEEVKETRLKLFKDFFLEERK
      KAMDNNGLKCAIDHILEAQQKGEINEDNVLYIVENINVA
15092 AIETTLWSMEWAIAEL 15045
      VNHGEIQEKLRRELDTVLGPGRQITEPDTHRLP 14944
14943 YLQAVVKETLRLRMAIPLLVPHMNLRDAELAGYGIPAESKVLVNAWYLANDPGRWRRPEE 14764
14763 FRPERFLEEERHVEANGNDFRYLPSGAGRRSCPGIVLALPILGVTIGRLVQNFELLP 14593
14592 PPGKDRVDTTEKGGQFSLHILKHSTIVAKPRAF* 14491

>aaaa01004333.1 (indica cultivar-group) orth AP004013.1 $P chr 8 98% 1 diff
1885 LRLPPSPFGLPILGHLHLLTPLPHQALHRLAARHGPLLYLRL 2019

>aaaa01004359.1 (indica cultivar-group) ortholog of AQ577123
deletion of Ihelix to heme
1854 MDPWLVLWLVLASMAFALLHLRRRARRGAPPLPPGPRPLPIIGNMLMMDQLTHRGLAAMAARY 2042
2043 GGLLHLRLGRVHMVVVSSPEHAREVLQVQDGDFSNRPASIAIAYLTYGRADMAFSHYGHF 2222
2223 WRQVRKLSALRLFSRRRAQSWRAVRDESAKLVGAIARRAGEAVDLGELIFGLTKDVIFRA 2402
2403 AFGTRDGGGHGELEVLLQEFSKLFGAFNVGDFIPWLAWLDPHGINRRLRAARAALDSVID 2582
2583 RIIDEHVSNPAGDEDADMVDDMLAFLDEAGRDHTGGGGELQGTLRLTR
     gap in seq.
     GRRACPAIVLGMYELELVVARLVHAFGWAPPGGVAPEE 2942
2943 LDMADGFGLTAPRAARLRAVPTPRLTCPM* 3032

>aaaa01004378.1 (indica cultivar-group) orth AC116603.1 $F chr 10, 97%
13156 RTLPPPPPAGTRPLPLIGSLHLLGDQPHRSLAGLAKTYGPLMSLRLGAVTTVVVSSPDVA 12977
12976 REFLQKHDAVFATRSAPDAAGDHTRNSVPWLPPGPRWRELRKIMATELFATHRLDALH 12803
12802 ELRQEKVSELVDHVARLARDGAAVDVGRVAFTTSLNLLSRTIFSRDLTSLDDRGASKEFQ 12623
12622 QVVTDIMGAAGSPNLSDFFPALAAADLQGWRRRLAGLFERLHRVF 12488
9748 LLKDLFAAGSDTSSSTVEWAMAELLRNPLPMAKACDELQRVIGSTRRIEESDIGRLPY 9575
9574 LQAVIKETFRLHPPVPFLLPRQATTTIQILGYTIPKGAKVFINVWAMGRDKDIWPEAEKF 9395
9394 MPERFLERATDFKGADFELIPFGAGRRICPGLPLAVRMVHVVLASLLINFKWRLPIKVER 9215
9214 DGVNMTEKFGVTLAKAIPL 9158

>aaaa01004390.1 $PI (indica cultivar-group) Nterm missing and one frameshift
12657 SDRPVKDAARGLLFHRAMG 12713
12714 FAPSGDYWRALRRVSANHLFTPRRVAASAPRRLAIGERMLDRLSALAGGEIGM 12872
12873 RRVLHAASLDHVMDTVFGTRYDGDSQEGAELEAMVKEGYDLLGMFNWGDHLPLLKWL 13043
13044 DLQGVRRRCRTLVQRVDVFVRSIIDEHRQRKRRTGGNGGGEELPGDFVDVLLGLQGEEKM 13223
13224 TESDMVAVLWVTKDPSDEMIFRGTDTVAILLEWI 13403
13404 MARMVLHPDIQAKAQAELDAVVGRERAVSDGDVAGLRYLQCVVKEALRVHPPGPLL 13571
      SWARLAVRDAHVGGHA frameshift 
13622 VPAGTTAMVNMWAIAHDPELWPEPDEFRPERFAEEDVSVLGGDLRLAPFGAGRRACPGKT 13801
13802 LALATVHLWLAQLLHRFEWAPVGGGVHLLERLNMSLEMEKPLVCKAKPRW* 13954

>aaaa01004413.1 (indica cultivar-group) orth to AP002092 $F 100%
323 KGSMPGAPLVVPFLGSAAHLIRDPVGFWDVQAALARKSGAGLAADFLFGRFTVFIRDS 496
497 ELSHRVFANVRADAFHVVSHPFGKKLFGEHNLVYLVGEEHKDLRRRIAPNFTPRALSTYA 676
677 VIQQRVIISHLRRWLDRSASNGGKAEPIRVPCRDMNLETSQTVFVGPYLTEKARERFDRD 856
857 YNLFNVGFITLPVDLPGFAFRRARLAGARLMHTLGDCARQSRQRMLGGGEPECLLDYLMQ 1036
1037ETVREIDEATAAGLPPPPHTSDVEVGALLFGFLFAAQDASTSSLCWAVSALDSHPNVLAR 1216
1217VRAEVAALWSPESGEPITAEMMSAMKYTQAVAREVVRYHPPATLVPHIAVEAFQLT 1384
1385AQYTIPKGTMVFPSVYESSFQGFQDADAFDPDRFFSEARREDVVYKRNFLAFGAGPHQ 1558
1559CVGQRYALNHLVIFMALFVSLVDFRRERTEGCDV 1660

>aaaa01004425.1a (indica cultivar-group) orth AL662964.1b $F chr 4
5389 FLPLISRRRRTQHRDDADGGVFRPYVDSLLDLRVPVGDDDVAGEGKEEHH 5240
5239 LSHRALTDDEMVGLVSEFLGGGTESVVSCVEWTLAHLVIEPEIQDKLRREVAAAEAD 5069
5068 RHGGERSTTPAAYLRAVILESLRMHPPVPLTMRDVRSPQAVEHLSLPDGGARVHFILGD 4892
4891 IGRDGKAWTDPDEFRPERFMAGGEAEGVGPLPGPREVRMMPFGAGRRYCPGMGLGV 4724
4723 AHACLLVAALVREFEW 4676

>aaaa01004425.1b (indica cultivar-group) orth AL662964.1a $F chr 4, 99% 
12375 PVALVTGRRRRRSDNLTSVPYGPHWRVLRRNLTAGIFHPSRLGLLAPLQRDAVDDLVAGI 12554
12555 SESAAGGAVPVVVRDVAYAAVFRLAARMCFGDGVGERQVRALRRVIREFVLDVGVANNVF 12734
12735 PVSTSTALARLRRWRRIRRLLSSRRRQAELYLPLIDERRRRMAARRRDRDDDGGTFRP 12908
12909 YVDALIELRVPGDGESTPAPLTDDEMVSLLMEFLAASTETVVSCIEWTLAHLVLNAEAQS 13088
13089 KLRREVGDGEHVHGRHRGRTPYMRAVILESLRLHPPVPFVIREVVGGAAPPVLD 13250
13251 ELAAMPMPGGGARVHFVIGDIGRDSKAWRDPKEFRPERFMAGGEAEGVGPVPGPK 13415
13416 EVRMMPFGAGRRSCPGMGVAMAHVGLFVAAQVREFEWTPAGGGVDLTQQDDFFNVMRT 13589
13590 PL 13595

>aaaa01004457.1 $FI (indica cultivar-group) CYP94B4 58% to 94B3
9557 MAWFVAAWSCLLVVVMVSSMRLSRSASSSCGSSCGHGGW
9440 GPRSYPVIGCLVAFYRNRRRLLDWYTEMLAASPSQTIVVDRLGARRTVVTANPA 9279
9278 NVEHILRARFANYPKGKPFTDVLGDLLGMGIFNVDGELWHAQRKLVSHEFSARALRDLEV 9099
9098 TVLEAEARDRLVPALAAASRGGGVVDMQDVLRRFAFDVICRVSLGVDPGCLDPALPAPRL 8919
8918 AAAFDTAAGIIARRGAAPVAAVWKVKRALDAGSERRLREEVGVIHEAVMGLIRSRRKERA 8739
8738 LLLVNGNGVGGGGGARSDLLSRMIECGYPDEAIRDMVISFIMAGRDTTSSALTW 8577
8576 FFWLLMRHRGVEAQVLDEIAATRRARGAGEEGGDDGEGEGLDLDDYRRMRVLHAALCET 8400
8399 MRLYPPVAWDSKHAAADDVLPDGTAVGRGDRVTYFQYGMGRMEAIWGADAADFSLDRWLS 8220
8219 LPRGGGDGAAAAAASPAAAAFAGVSPFKYPVFQGGPRTCLGKEMAFVQMKFVASAVLRRF 8040
8039 ELRPVDEGRTPAFVPLMTAHMAGGLNVTVRRRTPAPATSTAANGTGGELTSS* 7881

>aaaa01004481.1 (indica cultivar-group) orth AP003612.1 $F chromosome 6 100%
11759 LNETLRLYPPAVATIRRAKFDVTLGGGGDGDAGGIHIPRDTELLVPIMAIHHDARLWGPD 11938
11939 AAQFNPARFASGAARAAKHPLAFIPFGLGSRMCIGQSLAILEAKLTMAVLLQRFDLA 12109
12110 LSPTYVHAPTVLMLLHPQYGAPLIFRPR 12193

>aaaa01004523.1 (indica cultivar-group) orth AL606448.1 $P two short pseudogene fragments 1 diff
1027 WRVRAFGDLLGNGIFNSDGETWVAQRKTPA 938

>aaaa01004558.1 $FI (indica cultivar-group) 96% to AAAA01013573.1 43% to 714A1
7614 MEKLLALIVVLVILLSLALFYLCNILWLRAVKIRKKLRRQGIRGPKPTFLYGNTKEIKRI 7793
7794 RQELKLSQKQGTNNFISTLFPHFLLWRETYGMYML 7898 (?)
8802 GPVFLYSTGAMEILQVSHPDMVKDIGRWTPSELGKPNYLKKSRKALFGGGLFTENGDEWA 8981
8982 YQRKIIAPEFFMDKIK 9029 (0?)
9125 GMIQLIEDATVPVLEAWEDMIDDEGGCREIVVDDYLRNLSADVIARAC 9268
9269 FGSSFTKGEEIFCKLRQLQ 9325
9674 YLPTKSSQEIQMLDEQVRLLILDVAKEQHHYQDSHNSLVNAIIDGAQDGRSAAEAEDFI 9850
9851 VGNCKTIYFGGHESTAVTAIWCLMLLATHPEWQERARAEAMEVCRGRSTLDVDALRRLKI 10030
     VTMVIQETLRLYPPASVMMREALTDVKLGSIEVPRGT 10259
10260 IVQVPRLMLHLDKEAWGADADEFRPDRFANGVAAACRAAHMYVPFGHGPRTCIGQNLAMA 10439
10440 ELKVVLARLLTKFAFSPSPRYRHSPAFRLTIEPGFGLPLMVTKLP 10574

>aaaa01004597.1a (indica cultivar-group) ortholog to BI808700.1 (3 diffs)
runs off end of scaffold
2   WAIMRDPTAWERPDEFMPERFLQRAEVDFRGKDFEFMPFGAGRRLCPGLPMAERVVPFI 178
179 LASLLHAFEWRLPDGMSAEELDVSEKFTTANVLTVPLKAVPILASSASELQAS* 340

>aaaa01004597.1b $PI (indica cultivar-group) missing Nterm 42% to 76C4
89% to Nterm of AU172561.1 6 diffs with BI808700.1
RRLPPGPTPLPVIGNVLSLRGNMHHALARLARERYGPVMA
LKLGLVTAVVVSSPDAAREAFTKHDRRLAARAVPDTSRVRGFADRSMIWLPSSDTRWKTL
RGVVATHVFSPRSIAAARGVRERKVRDIVGYFAAHVGEVVDVGEAVYSGVVNLVSNAFFS
GDVVDVGEESAHGLREAVEDIILAIAKPNVSDLFPFLRPLDLQGWRRWAEKRYDTVFDIL
DNITNSRLADASAGNHAGDFLDSLLGLMSYGKIARDDVTTIMFDVFGAGTDTIAITVQWA
MAELLRNPSIMAKARTEMEDVLAGKKTIEENDTEKLPYLRAVIKEAMRLHPVAPILLPHQ
AAEDGVEIGGYAVPKGSTVIFNVWAIMRDPTAWERPDEF
MPERFLQRAEVDFRGKDFEFMPFGAGRRLCPGLPMAERVVPFIL (2) 14530
Inverted orientation
ASLLHAFEWRLPDGMSAEELD 
Small deletion
14623 VTVPLKAVPILASSASELQAS* 14688

>aaaa01004604.1 $FI (indica cultivar-group) 52% to 701A3 ortholog of AF088220 AP005302.1c
4885  MESMLVAGAGAAAVAAVGGLVAAAALADKLVAAPPPRKNRANPPP 5019 (1)
8461  AVPGLPIIGNLHQLKEKKPHQTFAKWSETYGPIYTIKTGASPVVVLNSTEVAKE (0?) 8622
9972  AMIDKFSSISTRKLPKAMSVLTRKSMVAISDYGDYQKMAKRNIMIGMLGFNAQ (0?) 10136
10237 FRGTRERMISNVLSTLHKLVSLDPHSPLNFRDVYINELFSLSLIQ (0?) 10371
10526 SLGEDVSSVYVEEFGREISKDEIFDVLVHEMMMCAVEADWRDYFPYLSWLPNKSFDTIVSTTEFR
10721 RDAIMNALIKKQKERIARGE (0)
10866 ARASYIDFLLEAERSAQLTDDQLMLLLSESILAAADTVLVTTEWTMYEIAKNPDKQ (0) 11033
11380 ELLYQEIREACGGEAVTEDDLPRLPYLNAVFHETLRLHSPVPVLPPRFVHDDTTLAGYD 11556
11557 IAAGTQMMINVYACHMDEKVWESPGEWSPERFLGEGFEVADRYKTMAFGAGRRTCAGSLQ 11736
11737 AMNIACVAVARLVQELEWRLREGDGDKEDTMQFTALKLDPLHVHLKPRGRM* 11892

>aaaa01004667.1a $PI (indica cultivar-group) Cterm 
1103 LHGGTTAEDVDVSEKFKSANVLAVPLQAVPVL 1008

>aaaa01004667.1b $FI (indica cultivar-group) ortholog of AP003623.1  
7298 MENSQVWLLWGALSVAVLFYLSTLRRRYAGGKPLPPGPTPLPLIGNLHLAGGTFHHKLR 7122
7121 DLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARATPDTFRACGFADRSMVF 6942
6941 IPSSDPQWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLIAYLRAHAGKEVLLGQAMYTG 6762
6761 LLNLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKPNISDFYPFLRPLDLQGLRRWT 6582
6581 TKRFNRVFSIMGDIIDRRLAHIRDGKPRHDDFLDSLLELMATGKMERVNVVNMLFEAFVA 6402
6401 GVDTMALTLEWVMAELLHNPAIMARVRAELSDVLGGKEAVEEADAARLPYLQAVLKEAMR 6222
6221 LHPVGALLLPHFAAEDGVEIGGYAVPRGSTVLFNAWAIMRDPAAWERPDEFVPERFLGRS 6042
6041 PPLDFRGKDVEFMPFGSGRRLCPGLPLAERVVPFILASMLHTFEWKLPGGMTAEDVDVSE 5862
5861 KFKSANVLAVPLKAVPVLIK 5802

>aaaa01004834.1a (indica cultivar-group) ortholog of AP005285.1 gene 2
8825 MAVDAMFGSVAVALLAVVVAAAALR 8751
     Missing 48 amino acids shown from ortholog
rwrrrrrrgggrplpgpvalpvvghlhlfrrplhrtlarlaarhgaav
7227 MGLRFGSRRVAVVSSAPAAEECLGPHDLAFANRPRLPSGEILAYEWSTMGTASYGPYWRH 7048
7047 IRRIAVTELLSAHRVQHFADVNVREVRALARRLYRRAAAAAAAGARTRVELKSRLF 6880
6879 ELLMNTMMSMICERTFYGA (2)
     DDDEVSEEARWFRSVV 6700
6699 KETMELSGASTVWDFLPAPARWLDAGRMTRRMRELSDSRTRFLQRLIDDQRKDMDADSDE 6520
6519 HAPAKRRTMIGVLLSLQSKDPDSCPDQLIRSLCI (0) 6418
6331 GSLQAGTDTSAATVEWAMSLLLNNPGAMARARGEIDACVGQPAARLLEAADLPKLHYLRC 6152
6151 VVMETLRLYPPVPLLAPHESSADCVVAGFHVPQGTMLLVNTFAIHRDPQVWDEPEAFIPDR (2) 5969
5398 FADGKNEGKMVIPFGMGRRRCPGENLGMQMVGLALGTLIQCFDWERVGEELVDMRECS 5225
5224 GLTMPKELPLEALYQPRASMVDLLTKI* 5141

>aaaa01004834.1b $FI (indica cultivar-group) ortholog of AP005285.1 gene 3
14689 MDALLIALFLLLLIALMETARVRRSGTQRRAGNVPPPPPEPAGLPLVGHLHLFRKPLHRT 14510
14509 LARLAARHGGAVFGLRLGSRRVAVVSSAPAAEECLGAHDVAFADRPRLPSGRILSYDWST 14330
14329 MGTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMARHLHRAAVRHGVGGAARV 14150
14149 RVELKSRLFELLMNTMMAMICDKTYYGD (2) 14066
13973 DDDGEVSKEARWFREMVEETMALSGASTVWNFLPAALRWVDVGGVGRRLWRLRESRTRFL 13794
13793 QGLINDERKEMEQEQGGDRAQPAARRRTMIGVLLSVQRQDPDACPDQLIRSLCI (0) 13632
12083 SSLEAGTDTSADTIEWAMSLLLNNPNVMRKARDEIDAFIGQPVRLLEASDLTKLQYLQCII 11901
11900 METLRLYPPAPLLVPHEASTDCSIAGFHITRGTMLLVNTFAIHRDPQVWNEPTSFIPER (2) 11721
      FENGRSEGKMAIPFGMGRRKCPAENLGMQMVGLAL 11541
11540 GTMIQCFEWERVGEELVDMTEGSGLTMPKEVPLQAFYQPRASLMHLLY 11397

>aaaa01004834.1c (indica cultivar-group) ortholog of BI806420.1
16396 SLEAGTGTSTDTIEWAMSLLLNNPDVMRKARDEIDAFIGQPVRLLEADDLPKLQYLRCI 16220
16219 IMETLRLYPPAPLLVPHESSSDCTVAGFHIPRGTMLLVNTFDIHRDPHIWDEPTSFIPER (2?) 16040
15947 FEDGRSEGKMAIPFGMGRRKCPAENLGMQMVGLGLGTMIQCFEWERVGEELVDMTEGSG 15771
15770 LTMPKKVPLEAFYQPRASVMHLLS* 15696

>aaaa01004950.1 $FI (indica cultivar-group) ortholog to AP004811.1 99%
15700 MEDWIFYSLTLLLCLACSLLLRARASAAAVEVAPLPPGPRTVPVLGPLLFLARRDFDVEP 15521
15520 TLRRIAAEHGPVFTFAPLGPSRPTIFVAARGPAHRALVQRGAAFASRPRGVSPASVLLTS 15341
15340 GGRNVSSAQHGPIWRALRRCISSGVLNPARLRAFSDARRWVLDALVSHIRGEGGAPLTVM 15161
15160 EPFQYAMFCLLVYMCFGDRPGDARVREIEALQRELLSNFLSFEVFAFLPPITRLVFRRRW 14981
14980 NKLVSLRRRQEELFAPLIRARREAGAGGDCYVDSLVKLTIPEDGGRGLTDVEIVSLCSEF 14801
14800 MSAGTDTTATALQWILANLVKNPAMQDKLREEITAAAVDGEVREEDLQAMPYLKAVVLEG 14621
14620 LRRHPPGHFLLPHTVEEETTLDGYRVPANTPVNFAVGEIGLDSEVWTSPEVFRPERFLAG 14441
14440 GEGEDVDLTGSKEIKMMPFGAGRRICPGMALALLHLEYFVANLVREFEWREVAGDEVDLT 14261
14260 QKLQFTVVMKRPLKATAVPLRGDRSAAAAVTGSA* 14156

>aaaa01005051.1 (indica cultivar-group) orth of AC083944.6 $F 99%
12952 YGPLFKTNMIMEDLIVSLDPEVTNFVFQQEERLFQMWYPDSFIRIIGTDSLIRTHGLLHR 13131
13132 HIKNLALRLFGPENLRREIIHDVQKTVEASLSSWLNQPSIELKEAVSS 13278
13733 MIFKVTAKKLISYDSSTSDGKMWKQYDAFTQGLFAFPLCIPGTAFYKCMQ
10748 GRKNVIKMLKEILDERKNTEEHHESVDFFDVIEEVKAENPDQMTENAALDLLFLLLF 10572
10571 ASFETTSSGITAMLIFLTDNPEALQEL 10491
9343 NIAVCLLMKYIGIIYTGFAIPKGSKIMICPYTVHLNPVVYKDPNTFNPWRWK 9188
8464 SGASKDFMAFGGGLRLCVGAHFAKLQMAVFLHCLVT 8357

>aaaa01005183.1 (indica cultivar-group) 71% to AC083944.6 $F
284 RYGPVFRTNIVGEDLIVSLDPEVNNFVFQQEGR 382
376 AFRMWYPDSIMRIIGADSIITTLGSSHKYIKNMVFRLFGPENLRRDMIKDLQKTAEAS 555
556 LLSWLHHPSIELKEAASS 612
2778 RSLQGRKNVMKMLKEMMDERKKATGRQESIDFFDVLLEELKEEKHAMSENVALDLIFLLL 2957
2958 FVSFETTASGITAILCFLSDNPKALQELT 3044
5276 FAIPKG*KIMISPSIVHLNPVVYKDPNIFNPWRWKVCK 5389
5911 ASKDFMALGGGRRLCVGADFAKLQMAIFLHCLVTKYR 6021

>aaaa01005294.1 (indica cultivar-group) orth of AC092778.2 $F chr 3 CYP85A like
8096 NTTSSSSSTKSERFCRYGSVFRTHILGCPTVVCMEAELNRRALASEGRGFVPGYPQSMLD 8275
8276 ILGRNNIAAVQGPLHRAMRGAMLSLVRPAMIRSSLLPKIDAFMRSHLAAWSSS 8434
8435 SSSSAVVDIQAK 8470
9375 SDALKAELYTLVLGTISLPINLPGTNYYQGFK
     ARKKLVAMLEQMIAERRSSGQVHDDMLDALLTGVEGTREKLTDEQIIDLIITLIYS 9731
9912 FDIRKGKAPEDAIDWNDFKSMTFT 9983
10063 TMQVIFETLRLATVVNGLLRKTTQDVEMNG
      YVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLVSK 10365
10481 HFMLFGGGSRMCPGKEVGTVEIATFLHYFVTQYR
      WEEEGNNTILKFPRVEAPNGLHIRV 10747

>aaaa01005413.1 $FI (indica cultivar-group) ortholog to AL713951.1
5862 MSLALLVLSAAYVLVALRRSRSSSLKPRRLPPSPPGWPVIGHLHLMSGMPHHALAELARTMRAPLFRMRL
     GSVPAVVISKPDLARAALTTNDAALASRPHLLSGQFLSFGCSDVTFAPAGPYHRMARR
     VVVSELLSARRVATYGAVRVKELRRLLAHLTKNTSPAKPVDLSECFLNLANDVLCRVAFG
     RRFPHGEGDKLGAVLAEAQDLFAGFTIGDFFPELEPVASTVTGLRRRLKKCLADLREACD
     VIVDEHISGNRQRIPGDRDEDFVDVLLRVQKSPDLEVPLTDDNLKALVL (0) 4972
4875 DMFVAGTDTTFATLEWVMTELVRHPRILKKAQEE
4773 VRRVVGDSGRVEESHLGELHYMRAIIKETFRLHPAVPLLVPRESVAPCTLGGYDIPARTR 4594
4593 VFINTFAMGRDPEIWDNPLEYSPERFESAGGGGEIDLKDPDYKLLPFGGGRRGCPGYTFA 4414
4413 LATVQVSLASLLYHFEWALPAGVRAEDVNLDETFGLATRKKEPLFVAVRKSDAYEFKGEE 4234
4233 LSEV* 4219

>aaaa01005438.1a $PI ortholog of AC068924.9d 96% 
2648 MNNLAILAVAGVLLLPLLVFLRDVTSRRRRRLPPGPPAVPLFGNLLWLRHSAADVEPLLL 2827
2828 TLFKKYGPVVTLRIGSRLSIFVADRHLAHAALIAAGAKLADRPQAAISTLLGVSDNIITR 3007
3008 ANYGAMWRLLRRNLVSQTLQQSRVDQFAPARVWVRRVLMEKLR 3136 insertion
3124 GEAA*DVRRRRRRRAQAFQHAVFCLLVLMCFGERLDEPAVRAVEDAERAWLLYISKKTSV 3303
3304 FFFLPWITKHL 3336 small deletion
3350 EYKRLASQGLPPARETAFQHSYVDTLLDVKIPE 3448
3449 EGNRALTDDEIVTLCSEFLNAGTDTTSTGLQWIMAELVKNPAVQEKLYAEINATCGGDDE 3628
3629 LLERNVRDKDNKMPYLNAVVKEGLRKHPPGHFVLPHKAAEDMDVGGYLIPKGATVNFMVA 3808
3809 EIGRDEREWENPMQFMPERFLDGGHGAGVDMHGTKGIKMMPFGVGRRICAGLNIAMLHLE 3988
3989 YFVGSMVMEFEWKEVEGLEVEFAEKREFTTVMAKPLRPRLVPRRS 4123

>aaaa01005438.1b $FI ortholog of AC068924.9d 98% 6 diffs
8812 MDNLVILAGVLLLPLLFLLRNAASSRRRRLPPGPPAVPLFGNLLWLRHSAADVEPLLLTL 8633
8632 FKKYGPVVTLRIGSRLSIFVADRHLAHAALIAAGAKLADRPQAAISTLLGVSDNIITRAN 8453
8452 YGAMWRLLRRNLVSQTLQQSRVDQFAPARVWVRRVLMEKLRGSGEAAPNVMEAFQYTMFC 8273
8272 LLVLMCFGERLDEPAVRDIEVAERAWLLYISRRMSVFFFFPWITKHLFRGRLEAAHALRR 8093
8092 RQKELFVPLIEARREYKRLASQGLPPARETAFQHSYVDTLLDVKIPEEGNRALTDDEIVT 7913
7912 LCSEFLNAGTDTTSTGLQWIMAELVKNPAVQEKLYAEINATCGGDDELLERNVRDKDNKM 7733
7732 PYLNAVVKEGLRKHPPGHFVLPHKAAEDMDVGGYLIPKGATVNFMVAEIGRDEREWENPM 7553
7552 QFMPERFLDGGHGAGVDMHGTKGIKMMPFGVGRRICAGLNIAMLHLEYFVGSMVMEFEWK 7373
7372 EVEGLEVEFAEKREFTTVMAKPLRPRLVPRRS 7277

>aaaa01005438.1c $FI ortholog of AC068924.9c 97% 11 diffs
9909  MDTWHVTVAAILVLIPFLRLILSRRGGRGGGKRGRLPPGPPAVPLLGSTVWLTNSLADAE 10088
10089 PLLRRLIARHGPVVSLRVASRLLVFVADRRLAHAALVEKGASLADRPAMASTRLLGESDN 10268
10269 LISRAGYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVEKLRDENGDAAAPRAVV 10448
10449 ETFQYAMFCLLVLMCFGERLDEDAVRAISVAQRDALLYLSSKMPVFAFFPAVTKHLFRGR 10628
10629 LQKAHALRRRQMELFVPLINARREYKKRQGGADGEPKKETTFEHSYVDTLLDIKLPDDGN 10808
10809 RPLTDDEMVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQAKLHDEIKSKTGGGGGGQ 10985
10986 REVSEEDIHDMPYLKAVVLEGLRKHPPGHMVLPHRAAEDMEIGGYLIPKGATVNFMVAEM 11165
11166 GRDEKEWEKPMEFMPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGVAMLHVEYF 11345
11346 VANMVSEFEWKEVAGDEVDFAEKIEFTTVMAKPLRARLVPRRA 11474

>aaaa01005438.1d $PI ortholog of AC068924.9b [top half looks like 9b bottom half 
looks like 9c] might be a recombination product
15719 MDAWQLFA 15696 (fs)
15696 PAIVILLPLLRLILFRRGDDGRRGRLPPGPPAVPLLGSTVWLTNSLYDAEPVVQRLMSRH 15517
15516 GPVVSLRFGSQLLVFVADRRLAHAALVESGASLADRPSQAASARLVGEGDTMNSRASYGP 15337
15336 VWRLLRRNLVADTLHPSRVHLFAPVRARVRRLLVDRLREEHGEAEAAAPRSVVETFQYAM 15157
15156 SFLLVLMCFGEQLDEDAVRAIGAAERDTMLYMSSEMGIFNFFPAITRHLFRGRLQKAHAL 14977
14976 RRRKEELFVPLINSRREYKKNG 14911 (fs and 4 aa deletion)
14911 KETTFEHSYVDTLLDIKLPDDGNRPLTDDEMVNLCSEFLNAGTDTTSTALQWIM 14750
14749 AELVKNPSIQAKLHDEIKSKTGGGGGGQREVSEEDIHDMPYLKAVVLEGLRKHPPGHMVL 14570
14569 PHRAAEDMEIGGYLIPKGATVNFMVAEMGRDEKEWEKPMEFMPERFLAGGDGEGVDVTGS 14390
14389 REIRMMPFGVGRRICAGLGVAMLHVEYFVANMVSEFEWKEVAGDEVDFAEKIEFTTVMAK 14210
14209 PLRARLVPPEYLDQ* 14165

>aaaa01005521.1 (indica cultivar-group) orth AP003230.1 $P pseudogene fragment 100%
8618 PFWHTVFRDLLGDGIFNSDGETWVA*RNTAALEFTT 8487

>aaaa01005609.1 $FI (indica cultivar-group) orth AC021892.5 $F chr 10 98% CYP75B3
     MDVVPLPLLLGSLAVSAAVWYLVYFLRGGTGANAARK
7136 RRPLPPGPRGWPVLGNLPQLGDKPHHTMCALARQYGPLFRLRFGCAEVVVAASAPVAAQF 7315
7316 LRGHDANFSNRPPNSGAEHVAYNYQDLVFAPYGARWRALRKLCALHLFSAKALDDLRAVR 7495
7496 EGEVALMVRNLARQQAASVALGQEANVCATNTLARATIGHRVFAVDGGEGAREFKEMV 7669
7670 VELMQLAGVFNVGDFVPALRWLDPQGVVAKMKRLHRRYDNMMNGFINERKAGAQ 7831
7832 PDGVAAGEHGNDLLSVLLARMQEEQKLDGDGEKITETDIKALLL
     NLFTAGTDTTSSTVEWALAELIRHPDVLKEAQHELDTVVGRGR 8185
8186 LVSESDLPRLPYLTAVIKETFRLHPSTPLSLPREAAEECEVDGYRIPKGATLLVNVWAIA 8365
8366 RDPTQWPDPLQYQPSRFLPGRMHADVDVKGADFGLIPFGAGRRICAGLSWGLRMVTLMTA 8545
8546 TLVHGFDWTLANGATPDKLNMEEAYGLTLQRAVPLMVQPVPRLLPSAYGV

>aaaa01005635.1 $PI (indica cultivar-group) one stop codon, one fs
62% to AAAA01000843.1
8796 MDELSAGSLYLVVLGTLALALAFKRVLRGKETGVKLPPGPWNLPIIGSLHHLVGAHLPHRALLRVSR 8596
8595 RQGPLMLLRLGEVPAVVVSSPEAAMEFLRTRDPVFASRPRGALRSTSSASAVK 8437
8436 GSSWRHTASTGGRCARSAWWSCSAQGRCSGWSLSGRRRGGVPPRRGHRHDIA 8281
8280 CYSQHRHDPDASGAQ*RHHREGGVRRQVPTAGLRYLRVLKVVATLAGSFN 8131
8130 MVDLFPSSRLVRWLSCVERRLREHHAQTVRIVDSIIQDRKENEASASPGASAEDDDNDDL 7951
7950 LDVLLRLQREDNLTFPITAEIIGALIS (0) 7852
7202 DIFGAATDTTGSTLEWAMAELMRNPRTMEKAKQEVQNALGQGRAMVTGADIGDLHYLQMV 7023
7022 IKETLR (fs) 7005
7000 LHPSIPLIVRASEESTLVMGYDIPQGTNIFINAFAVARDPRYWKDADEFMPERFEKN 6830
6829 GDDIKATTVHMGFIPFGAGR (deletion of 18 aa heme signature region in seq gap) 6770
6669 NLLYHFDWTLINGESPESLDMGEVWGISIHRRSDLRLHAALSVSSGFLRHSDRDS* 6496

>aaaa01005655.1 $FI (indica cultivar-group) 
12123 MEASTILWLLYVSLASCLLYKVFVSTKNGHPKIAARRPPGPTPVLLLGNVFDLRGELHL 11947
11946 ALARLAEEHGPVMSLKLGTATAVVASSAAAARDALQRYDHVLAARAVCDAARALGTH 11776
11775 ERSIVWLPGSSALWKRLRAVCTNHLFSARGLDATRAVREAKVRELVEHLRGHAAGAGEEE 11596
11595 AAAVDVGRVVFSAVINLVSNVLFSEDVADLSSDRAQELEMLVRDTVEEATKPNLSDLFP 11419
11418 VLAALDLQGRRRRTAVHIRKFHDFFDEIISRRQNAGGEGERKEDFLDVLLQLH 11260
11259 SADQLSLDTIKTFLG (0) 11215
10259 DLFTAGTDTNSITVEWAMAELLRHPAAMSRARAELRDALGAKPHPDESDIGRLPYLSAVV 10080
10079 METMRLHPPSPLLMPHEAVADGAAVGGYAVPRGTKVIVNVWSIMRDPASWPRPEEFEPER 9900
9899  FVAAGGSFRGGEMLEFMPFGAGRRACPGTPMATRVVTLVLASLLHAFEWRLPGGMRPCDV 9720
      DVRGRFGTSLNMVTPLKAVPVPVPARP* 9636

>aaaa01005681.1 (indica cultivar-group) orth AP003866.1a $F chr 7 >99%
2692 EQGTVDLKRELDLLILTIASRVLLGKEVRETMFADVVASFHELMDNSMHLISLC 2853
2854 FPNLPIPRHRRRDTASARLKELFSRAIQLRRGSGRAEDDVLQRFLESRYR 3003
3004 DGRAMSDNEITGMLIALVVAGQHMSSSASTWTGAFLLRDPKHLAAAVDEQRRLIG 3168
3169 DDRVDYDALTTGMSTLHRCIKEALRMHPPAPALVRTVRRGFAVRTREGKEYRMPAGHS 3342
3343 VVSYAAFNHRLGYVYRDPDEYDPERFGPERKEDRVAGKFSFTAFGGGRHACLGEHYAFLK 3522
3523 MKVIWSYLLRNFELELVSPFPEVEL 3597

>aaaa01005693.1 (indica cultivar-group) 53% to 74B2
911  RPIPGSYGPPLLGPLRDRLDYFWFQGPDDFFRRRAADHKSTVFRANIPPTFPFFLGVDPR 1090
1091 VVAVVDAAAFTALFDPALVDKRDVLIGPYVPSLAFTRGTRVGVYLDTQDPDHARTKAFSI 1270
1271 DLLRRAARNWAAELRAAVDDMLAAVEEDLNRAPDPAAASASYLIPLQKCIFRFLCKA 1441
1442 LVGADPAADGLVDRFGVYILDVWLALQLVPTQKVGVIPQPLEELLLHSFPLPSFVVKPG 1618
1619 YDLLYRFVEKHGAAAVSIAEKEHGISKEEAINNILFVLGFNAFGGFSVFLPFLVMEVGKP 1798
1799 GRDDLRRRLREEVRRVLGGGDGDGGEAGFAAVREMALVRSTVYEVLRMQPPVPLQFGRAR 1978
1979 RDFVLRSHGGAAYEVGKGELLCGYQPLAMRDPAVFDRPEEFVPERFLGDDGEALLQYVYW 2158
2159 SNGPETGEPSPGNKQCAAKEVVVATACMLVAELFRRYDDFECDGTS 2296

>aaaa01005737.1 $FI (indica cultivar-group) 
14185 MEDKTILLSLALSMLLAILLSKLVSISKKPRLNLPPGPWTLPVIGSIHHLASNPNTHRALRALSQK 13988
13987 HGPLMQLWLGEVPAVVASTPEAAREILRNQDLRFADRHVTSTVATVSFDASDIFFSPY 13814
13813 GERWRQLRKLCTQELLTATRVRSFSRVREDEVARLVRELAGGGGAAVDLTERLG 13652
13651 RLVNDVVMRCSVGGRCRYRDEFLGALHEAKNQLTWLTVADLFPSSRLARMLGAAPRRGLA 13472
13471 SRKRIERIIADIVREHEGYMGSGGGGGDEAAAAAAGKDCFLSVLLGLQKEGGTPIPITNEIIVVLLF (0) 13271
10674 DMFSGGSETSATVMIWIMAELIRWPRVMTKVQAEVRQALQGKVTVTEDDIV 10522
10521 RLNYLKMVIKETLRLHCPGPLLVPHRCRETCKVMGYDVLKGTCVFVNVWALGRDPKYWED 10342
10341 PEEFKPERFENSDMDYKGNTFEYLPFGSGRRICPGINLGIANIELPLASLLYHFDWKLPD 10162
10161 EMASKDLDMQEAPGMVAAKLTSLCVCPITRVAPLISA* 10048

>aaaa01005754.1 (indica cultivar-group) orth AC074054.1b $P chr 10 99%
3717 FFLPLAFSLFLAVISAYVLQLLADARRRLPPGPWPLPLIGNLHQLDHLPHRSLARLAARH 3538
3537 GPLMSLRLGTVRAVVASSPEMAREVLQRHNADIAARSFGDSMRAGGHCENSVVCLPPRLR 3358
3357 WRALRRLSTVGLFSPRRLKKNFYIRVLSDLKLKTAEK*TSIKNPKIISK 3211
3210 FKVEIQNLTDKYKHKRKDNTLVIMHD 3133
2979 GGETTSHTMECAMAELLQCPNSMRRVQEELKSVIGTKQQMDEHDITKLPYLQAVIKET 2806
2805 LRLHPPVPLPPYEAEATVEIQGYTIPKGAKVLINLWAINRCANAWTEPDKFMPERFYDS 2629
2628 DITFMGRDFQLIPFGAGRRICLGLPLAHRMVHLMLGSLLHRFTWTLPAEAGKNGVDMRER 2449
2448 FGLTLSFVVPLYVI 2407

>aaaa01005977.1 (indica cultivar-group) orth AP003258.2 $F chr 1, 1 diff
10301 RFKNGVSRAASYPNALLSFSQGPRGCIGQTFAMLESQIAIAMILQRFEFRLSPSYVH 10131
10130 APMEAITLRPRFGLPVVLR 10074

>aaaa01006047.1 (indica cultivar-group) 75% to Arab 97B3 ortholog of AU173808.1
missing Nterm exon
2172 PKSKRGLLDNASNLLTNLLSGGSLGAMPVAEGAVTDLFGRPLFFSLYHWFLE (?) 2327
3740 HGSVYKLAFGPKAFVVVSDPIVARHILRENAFCYDK (?) 3847
4088 GVLAEILKPIMGKGLIPADLDTWKQRRKG (?) 4174
4470 ITPGFHALFIEAMVGVFTKCSERTIFKLEELIERGEHGEKYTIVDLEAEFSNLALDII
     GLGVFNFDFDSVTKESPVIK (?) 4703
4921 AVYGTLFEAEHRSTFYIPYGNLPLTRWIVPRQRKFHSDLKVINDCLDSLIKNAKETRQ (?) 5094
5181 EADVEKLQQRDYSSLK (?) 5228
5330 DASLLRFLVDMRGADVDDRQ (0?) 5389
5486 LRDDLMTMLIAGHETTAAVLTWSVFLLAQ (?) 5560
5678 NPSKMRKAQAEVDSVLSNETINVDQLKKLEY (?) 5770
5884 IRLIIVEALRLYPQPPLLIRRALRPDKLPG (?) 5973
6783 GYNGAKEGYEIPAGTDIFLS (0?) 6842
6942 IYNLHRSPYFWDRPDEFEPERFSVPKKDESIEGWAGFDPDRSPGAMYPNE (0?) 7091
7178 ILADFAFLPFGGGPRKCVGDQFALLES 7258
7259 TVALALLLQKFDVELRGSPDEVEMVTGATIHTKSGLWCRVRRRT* 7393

>aaaa01006067.1 (indica cultivar-group) 78% to AC074282.1 $P 
90% to aaaa01000965.1d $PI
8194 LDLQDVLQRFGFHTICMVAFGHDLPCLADGGVMEDARSDFMHSFGEAQNLVVGRFFDLIE 8015
8014 VSWKIKKWLNVGTIRRLRKAIADVHTFAMDIVRARRQSASVQDRDDVLSRFVASDEHSD 7838
7837 EVLRDIVLSFLIVGRDTTASGLSWFFCLLSSRPDVVARIADEVRAVRKPTD 7685
7684 TRLGEPFRFDALWEMHYLHAALTESMRLYP 7595
7572 DDTLPDGTLVRAGWSVTYSAYAIGR 7498
7502 GEDCLEYRPERWLGEDG 7452

>aaaa01006093.1a $FI CYP73 (indica cultivar-group) 99% to AP004850.1b
6441 MAASAMRVAIATGASLAVHLFVKSFVQAQHPALTLLLP
6327 VAVFVGIAVGAKGGSGGDGKAPPGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLR 6148
6147 LGVRNLVVVSDPKLATEVLHTQGVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRV 5968
5967 MTLPFFTARVVQQYKAMWEAEMDAVVDDVRGDAVAQGAGFVVRRRLQLMLYNIMYRMMFD 5788
5787 ARFESVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAF 5608
5607 FNNNYVEKRR (2) 5578
5431 NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAIETTLWSIEWALAEVVNHPAVQSKV 5252
5251 RAEINDVLGDDEPITESNIHKLTYLQAVIKETLRLHSPIPLLVPHMNLEEAKLGGYTIPK 5072
5071 GSKVVVNAWWLANNPALWENPEEFRPERFLEKESGVDATVAGKVDFRFLPFGVGRRSCPG 4892
4891 IILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFSLHIAKHSVVAFHPISA* 4721

>aaaa01006093.1b $FI CYP73 (indica cultivar-group) 99% to AP004850.1a
98% to AAAA01006093.1a
11410 MAASVVRVAIATGASLAVHLFVKSFLQAQHPALTLLLP
11524 VAVFAGIAVGAKGGNGGDGKAPPGPAAVPVFGNWLQVGNDLNHRFLAAMSARYGPVFRLR 11703
11704 LGVRNLVVVSDPKLATEVLHTQGVEFGSRPRNVVFDIFTANGADMVFTEYGDHWRRMRRV 11883
11884 MTLPFFTARVVQQYKAMWEAEMDAVVDDVRGDAVAQGTGFVVRRRLQLMLYNIMYRMMFD 12063
12064 ARFKSVDDPMFIEATRFNSERSRLAQSFEYNYGDFIPILRPFLRGYLNKCRDLQSRRLAF 12243
12244 FNNNYVEKRR (2) 12273
12431 NKLRCAIDHILEAEKNGELTAENVIYIVENINVAAIETTLWSIEWALAEVVNHPAVQSKV 12610
12611 RAEINDVLGDDEPITESSIHKLTYLQAVIKETLRLHSPIPLLVPHMNLEEAKLGGYTIPK 12790
12791 GSKVVVNAWWLANNPALWENPEEFRPERFLEKESSVDATVAGKVDFRFLPFGVGRRSCPG 12970
12971 IILALPILALIVGKLVRSFEMVPPPGVEKLDVSEKGGQFSLHIAKHSVVAFHPISA* 13141

>aaaa01006105.1a $FI (indica cultivar-group) similar to Lolium rigidum AF321859 
MDELLYRALLLSVLAVALLQIIEAFLIIIRAKPAAPPLPPGPWRLPVIGSMHHLAGKLPHRALRD 3196
LAAAHGPLMMLRLGETPLVVASSREMAREVLRTHDANFATRPRLLAGEVVLYGGADILF 3019
SPSGEYWRRLRQLCAAEVLGPKRVLSFRHIREQE (0) 2914
MESQVEEIRAAGPSTP
VDLTAMFSFLVISNVSRASFGSKHRNAKKFLSAVKTGVTLASGFKIPDLFPTWRKVLAAV 1750
TGMRRALEDIHRVVDSTLEEVIEERRSAREDKARCGMVGTEENLVDVLIGLHEQGGC 1579
LSRNSIKSVIFDMFTAGTGTLSSTLGWGMSELMRSPMVMSKLQGEIREVFYGKATVGEED 1399
IQASRLTYLGLFIKETLRLHPPVPLLVPRESIDTCEIKGYMIPARSRIIVNAWAIGRDPR 1219
YWDDAEEFKPERFEKNIVDFTGSCYEYLPFGAGRRMCPGVAYGIPILEMALVQLLYHFDW 1039
SLPKGVVDVDMEESSGLGARRKTPLLLCATPFVVPVL* 925

>aaaa01006105.1b $FI (indica cultivar-group) 
6903 MDGLLYQALLLSALAVAVLQIVKLAVVNRGKKQAAAAAPTPPGPWRLPVIGSMHHLAGKLAHRALRD 6703
6702 LAAVHGPLMMLQLGETPLVVVSSREVAREVLRTHDANFATRPRLLAGEVVLYGGADILF 6526
6525 SPSGEYWRKLRQLCAAEVLGPKRVLSFRHIREQE (0) 6421
     MASRVERIRAVGPSVP
5914 VDVSALFYDMAISIVSCASFGKKQRNADEYLSAIKTGISLASGFKIPDLFPTWRTVLAAV 5735
5734 TGMRRALENVHRIVDSTLEEVIEERRGAARECKGRLDMEDNEENLVDVLIKLHEQGG 5564
5563 HLSRNSIKSVIFDMFTAGTGTLASSLNWGMSELMRNPRVMTKLQGEIREAFHGKATV 5393
5392 GEGDIQVSNLSYLRLFIKETLRLHPPVPLLVPRESIDMCEVNGYTIPARSRIVVNAWAIG 5213
5212 RDPKYWDDPEEFKPERFEGNKVDFAGTSYEYLPFGAGRRICPGITYALPVLEIALVQLIY 5033
5032 HFNWSLPKGVTEVDMEEEPGLGARRMTPLLLCATPFVVPVL* 4907

>aaaa01006105.1c $PI (indica cultivar-group) very similar to AAAA01006105.1a
but no Nterm exon present in 2000bp to end of clone (join with a and b above)
12642 (0) IASRVDLICAVGPLTL
12594 VDVSALFYDITISIASCASFGKKHRNVDEYLSSIKTRVSLASRFKIPDLFPSWRTMLAMV 12415
12414 TGMRRALEEVHGIVDSTLEDVIEERQGEKEDKTRPDMVDTKENLVDVLIGLHENGA 12247
12246 HLSRDSIKAVIFDMFTAGTGTLASALNWGMSKLMRNPRVMTKLQGEIRKAFHGKVTVG 12073
12072 EDDIQAANLPYIRLFIEETLLLHPVVPLLVPRESIDVCEVNGYTILARSRIVVNAWAIGR 11893
11892 DPKYWDNPEEFKPEWFEGNIVDFPGSSYEYLPFGAG*RMCPGIAYGLPVLEMALVQLLYH 11713
11712 FD*SLPNGVMKVDMEEEPGLGARRKTPLLLNLFVIPVLQGQQ*  11578

>aaaa01006146.1a $PI (indica cultivar-group) Nterm fragment does not continue
4120 LLVIVLTAVVFFLATILRHGRRAYRLPLGPKPWPIIGNLNLIGALPHRSIHELCK 4284
4285 RYGPLIQLQFGSC

>aaaa01006146.1b $PI (indica cultivar-group) Nterm (plus strand)
13148 MEMELPSWASVLVIVLAAVVFLLATILRHGRRAYRLPPGPNPWPIIGNLNLIGALPHRSIHELSK 13342
13343 RYGPLMQLRFGSFPVVVGSSAEMARFFL (?) KSHD 13522
13523 IVFTDRPRTAAGKHTTYNYTDILWSPYGAYWRQARKMCVTELFSARRLESFEH 13681

>aaaa01006146.1c $PI (indica cultivar-group) Nterm (minus strand)
14402 MEMELPSWASVLVIVLAAVVFLLATILRHGRRAYRLPPGPNPWPIIGNLNLIGALPHRSIHELSK 14208
14207 RYGPLMQLRFGSFPVVVGSSAEMARFFL (?) KSHD 14028
14027 IVFTDRPRTAAGKHTTYNYTDILWSPYGAYWRQARKMCVTELFSARRLESFEHIRGEEV 13851
13850 RALLRDLH 13827
13826 GAAAPVLLRDYLSTATLGVISRMVLGKKYVGVEGASA 13716 
only 34 bp until seq b on opposite strand

>aaaa01006154.1 (indica cultivar-group) orth of AP003442.1 $F chr 1 86A like
8151 DLLSRFMKKRDSKGKAFPEDVLQWIALNFVLAGRDTSSVALSWFFWTLMQRRDVERKVVL 7972
7971 EIASVLRETRGDDTARWTEEPLNFDELERLVYLKAALTETLRLYPSVPQDSKYVVADDVL 7792
7791 PDGTVVPAGSAITYSIYSVGRMESIWGKDCAEFRPERWLSADGSRFEPVKDAYRFVAFNG 7612
7611 GPRTCLGKDLAYLQMKSIASAVLLRNSVELVPGHKVEQKMSLTLFMKNGLRVHVKPRD 7438

>aaaa01006229.1a (indica cultivar-group) orth AC021892.5 $F chr 10
these two sequences are exactly identical (probably an error in assembly)
2552 RRPLPPGPRGWPVLGNLPQLGDKPHHTMCALARQYGPLFRLRFGCAEVVVAASAPVAAQF 2373
2372 LRGHDANFSNRPPNSGAEHVAYNYQDLVFAPYGARWRALRKLCALHLFSAKALDDLRAVR 2193
2192 EGEVALMVRNLARQQAASVALGQEANVCATNTLARATIGHRVFAVDGGEGAREFKEMV 2019
2018 VELMQLAGVFNVGDFVPALRWLDPQGVVAKMKRLHRRYDNMMNGFINERKAGAQ 1857
1856 PDGVAAGEHGNDLLSVLLARMQEEQKLDGDGEKITETDIKALLL
     NLFTAGTDTTSSTVEWALAELIRHPDVLKEAQHELDTVVGRGR 1503
1502 LVSESDLPRLPYLTAVIKETFRLHPSTPLSLPREAAEECEVDGYRIPKGATLLVNVWAIA 1323
1322 RDPTQWPDPLQYQPSRFLPGRMHADVDVKGADFGLIPFGAGRRICAGLSWGLRMVTLMTA 1143
1142 TLVHGFDWTLANGATPDKLNMEEAYGLTLQRAVPLMVQPV 1023

>aaaa01006229.1b(indica cultivar-group) orth AC021892.5 $F chr 10
these two sequences are exactly identical (probably an error in assembly)
11898 RRPLPPGPRGWPVLGNLPQLGDKPHHTMCALARQYGPLFRLRFGCAEVVVAASAPVAAQF 12077
12078 LRGHDANFSNRPPNSGAEHVAYNYQDLVFAPYGARWRALRKLCALHLFSAKALDDLRAVR 12257
12258 EGEVALMVRNLARQQAASVALGQEANVCATNTLARATIGHRVFAVDGGEGAREFKEMV 12431
12432 VELMQLAGVFNVGDFVPALRWLDPQGVVAKMKRLHRRYDNMMNGFINERKAGAQ 12593
12594 PDGVAAGEHGNDLLSVLLARMQEEQKLDGDGEKITETDIKALLL
      NLFTAGTDTTSSTVEWALAELIRHPDVLKEAQHELDTVVGRGR 12947
12948 LVSESDLPRLPYLTAVIKETFRLHPSTPLSLPREAAEECEVDGYRIPKGATLLVNVWAIA 13127
13128 RDPTQWPDPLQYQPSRFLPGRMHADVDVKGADFGLIPFGAGRRICAGLSWGLRMVTLMTA 13307
13308 TLVHGFDWTLANGATPDKLNMEEAYGLTLQRAVPLMVQPV 13427

>aaaa01006291.1 (indica cultivar-group) 64% to AQ865256.1
6318 LVQLTMVIQETLRLYP 6271
6239 NDMKLGGIDIPKGTNIWIPIAMAHRDPSVWGPSADKFDPDRFANGIAGACKPPHMYM 6069
6068 PFGVGVRTCAGQNLAMVELKVVLSLLMSKF 5979

>aaaa01006345.1 (indica cultivar-group) 77% to AC096855.1 $F
10409 VLQLLKLLLVRHRRPRTPPGPWRLPVIGSMHHLVNVLPHRKLRELAAVHGPLMMLQLGET 10230
10229 PLVVATSKETARAVLKTHDTNFATRPRLLAGEIVGYEWADILFSPSGDYWRKLRQLCAAE 10050
10049 ILSPKRVLSFRHIREDE 9999
9730 VNLSVMFHSVTNSIVSRAAFGKKRKNAAEFLAAIKSGVGLASGFNIPDLFPT 9575
9574 WTGILATVTGMKRSLRAIYTTVDGILEEIIAERKGIRDEKISGGAENVDENLVDVLIGL 9398
9397 QGKGGFGFHLDNSKIKAIILQDMFA 9218
9217 GGTGTSASAMEWGMSELMRNPSVMKKLQAEIREVLRGKTTVTEADMQAGNLRYLKMVI 9044
9043 REALRLHPPAPLLVPRESIDVCELDGYTIPAKSRVIINAWAIGRDPKYWDNPEEFRPERF 8864
8863 EDGTLDFTGSNYEFIPFGSGRRMCPGFNYGLASMELMFTGLLYHFDWSLPEGVNEVDMAE 8684
8683 APGLGVRRRSPLMLCATPFVPVV 8615

>aaaa01006348.1 (indica cultivar-group) orth of AP003752.1 $F chr 7 100%
492 QFLLETLRLYSPVPAIRRRTAAAVEMGGVTVPGGTMLTFPIATMHRDEEVWGADAGVFDP 671
672 MRFDGGGGAMAKLLSFSTGPRACVGQSFAMVEAKAVVAAILRRFRLE 812

>aaaa01006365.1 (indica cultivar-group) orth AC090873 $F >99%
6689 EKRRRLPPGPATVPVLGNLLWATNSGMDIMRAVRRLHARHGPMLGLRMGSRLEVIVADRR 6510
6509 LAHAALVESGAAMADRPEFASRALLGLDTATISNSSYGPLWRLFRRNFVAEVAHPARLRQ 6330
6329 FAPARAAVLEELTDKLRRRQEDAGAGTILETFQYAMFFLLVAMCFGELLDERAVRDIAAA 6150
6149 QRDLLLHSSKKLRVFAFLPAITTRLFAGRMKAMIAMRQRLKGMFMPLIDARRARKNLVD 5973
5972 DHGDATAPPPPAASATTLPHSYVDTLLNLRINDNGGERALTDDEMVALCSEFLNG 5808
5807 GTDTTSTALEWIMAELVKNPIIQDKLHGEIKGAITSNSGKVSEEDVQKMPYLKAVVMEG 5631
5630 LRRHPPGHFVLPHAPAEDMELGGYTIPKGTLVNFTVADMGMDGAAWDRPREFLPERFMAG 5451
5450 GDGEGVDITGTREIRMMPFGAGRRICPGLGVATLHLEYFVANMVAAFKWRAAEGEAVDVD 5271
5270 GEKLEFTVVMEKPL 5229

>aaaa01006398.1a (indica cultivar-group) (partialI)
1854 MVVVVVVVAIAIVVPLLYLVLLPPARRGGGDSARRRLPPSPRGLPLLGHLHLLGALP 2024
2025 HRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEEVMRARDVAFASRPRVAMAERLLY 2198
2199 GGRDVAFAPYGEYWR 2243 sequence gap here

>aaaa01006398.1b $FI (indica cultivar-group) no ortholog
4560 MAVSLLPAVLVLLAIVAPLLYLVLLPAVKYTTSNGAARWEDDDGGDGRRRRRLPPSPRGLPLLGHLHLLGAL 4775
4776 PHRALRSLAAAHGPVLLLRLGRVPAVVVSSAAAAEEVMRARDVAFASRPRVAMAERLLYG 4955
4956 GRDVAFAPYGEYWRHARRICVVHLLSARRVLSFRRVREEEAAALVARVRAAARAPGAR 5129
5130 GAVDLVEHLTAYSNTVVSRAVFGDESARGLYGDVDRGRALRKLFDDFVELLGQEPMGELL 5309
5310 PWLGWVDAVRGLDGKVQRTFEALDSIIEKVIDDHRRRRRRHEVGRQMDSDDDGG 5471
5472 GGGDHRDFVDVLLDVNETDKDAGIRLGTIEIKAIIL (0)
     DMFAAGTDTTTTAMEWAMAELITHRDAMHKVQDEIRAVVGVTG 5831
5832 CVTEDHIDRLPYLKAVLKETLRLHPPNPLLVPHVPLADTEILGYTVPTHTRVLINAWTIG 6011
6012 RDPVTWGEHAEKFIPERFLNNNVDYKGQDFGLVPFGAGRRGCPGMGFAVPTIEMALASLL 6191
6192 YNFSWETRPVDRRCKSGTSSLDMSEVNGISVHLKYGLPLMAKFYSS* 6332

>aaaa01006398.1c $FI (indica cultivar-group) ortholog of AP003434.1 95%
9740  MAVSLLVVLLVVLAIVVPLLYLVLLPAGNTTRNGAARWEDDGGDGRRRRRLPPSPRGLPL 9919
9920  LGHLHLLGALPHRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEEVMRSRDVEFASRP 10096
10097 RMAMAELLLYGGRDVAFAPYGEYWRQAPRICVVHLLSARRILSFRRVREEEAAALVGRV 10273
10274 RAAAADVVDLSDLLIAYSNTVLTRIAF GDESARGGGGGDRGRELRKVFDDFARL 10435
10436 LGTEPMGELLPWFWWVDALRGIDGKVQRTFEALDGILERVIDDHRRRREGGRLMDDDGGG 10615
10616 DHRDFVDVLLDVNETDKDAGIQLGTVEIKAIIM (0) 10711
11174 DMFVGGSDTTTTMIAWTMAELINHPRAMHKAQNEIRAVVGNTSHVTKDHVDKLPYLKAVF 11353
11354 KETLRLHPPLPLLIPREPLADAQILGYTIPAHTRVVINAWAIGRDPAAWGQQPDEFSPEK 11533
11534 FLNGAIDYKGQDFELLPFGAGRRGCPGIVFGVSAMEIALASLLYHFDWE 11680
11681 AAATDHRRRGSQAWALPVDMSEVNGIAVHLKYGLHVVAKPRMP* 11812

>aaaa01006398.1d $PI (indica cultivar-group) seq gap before 12414 
first exon has two frameshifts and part is missing (1205)
orth AP003434.1d
      GDESARG (fs) RALRKLFENFARLLGTEPMGELLPWLGWVDAV (fs)
      WLDGKVQRTFEALDSIIEKVIDDHRRRRRRREVGRQMDSDDDGGGGG
      DHRDFVDVLLDVNETDKDAGIRLGTIEIKAIIL (0)
12924 DMFAAGTDTTTTAMEWAMAELITHRDAMHKVQDEIRAVVGVTGCVTEDHIDRLPYLKAVL 13103
13104 KETLRLHPPNPLLVPHVPLADTEILGYTVPTHTRVLINAWTIGRDPATWGEHAEKFIPER 13283
13284 FLNNNVDYKGQDFGLVPFGAGRRGCPGMGFAVPTIEMALASLLYNFSWETRPVDRRCKSG 13463
13464 TSSLDMSEMNGISVRLKYGLPLIAKSHFP* 13553

>aaaa01006486.1 (indica cultivar-group) orth AP003752.1e $F chromosome 7 99%
13019 IELSQRFQELTADVISRTAFGSSYSEGKQVFLAQRKLQFLAFSMFLTIQIPG 13174
13175 FRYLPTKKNLKIWSLDKKVRSMLTNIIKIRLANKDTMGYGNDLLGLMLETCAPEHDE 13345
13346 SQQLSMDEIIAECKTFFFGGHDTTSHLLTWTMFLLSTHPEWMRKIRKEVTTMCGDEV 13516
13517 PTGDMLNKMNLLNMFLLETLRLYGPVSLISRRTGTNAKFGGIKVPEGTILRIPIATIHR 13693
13694 DKEVWGEDADEFKPARFENGVSKAAKHPNALLSFSNGPRSCIGQNFAMIEAKAVITMILQ 13873
13874 RFSFTLS 13894

>aaaa01006724.1 (indica cultivar-group) orth AP003434.1c $F chr 1 99% also AU163704.1
7723 RRRLPPSPPWGLPLLGHLHLLGALPHRALRSLAAAHGPVLLLRLGRVPVVVVSSAAAAEE 7544
7543 VMRTRDLEFASRPRVAMAERLLYGGRDVAFAPYGEYWRQTRRICVVHLLSARRVLSFRRV 7364
7363 REEEAAALVARVRAAGGAVDLVEHLTAYSNTVVSRAVFGDESARGLYGDVDRGRVLR 7193
7192 KLFDDFVELLGQEPMGELLPWLGWVDALNGMEVKVQRTFEALDGILEKVIDDHRRRRR 7019
7018 EVGRQMDDGGGGDHRDFVDVLLDVNETDMDAGVQLGTIEIKAII 6887
5268 DMFAAGTDTTTTVIEWAMAELITHPDAMRNAQDEIKAVVGITSHITEDHLDRLPYLK 5095
5094 AVLKETLRLHPPLPLLVPHEPSSDTKILGYSIPARTRIVINAWTIGRDQATWGEHAEEFI 4915
4914 PERFLESGLDYIGQDFVLVPFGAGRRGCPGVGFAVQAMEMALASLLYNFDWETRVVDRRS 4735
4734 EFGTSSLDMSEMNGLSVHLKYGLPLIAI 4651

>aaaa01006859.1a (indica cultivar-group) Cterm runs off end (partialI)
exactly matches AAAA01006859.1b could be a duplication or missassembly
    MMPFGVGRRICPGLGLALLQLEYFVANMVREFEWGMVDGDCGG 236
237 GINLAERPEFTVIMEQPLRALVVPRRRE* 326

>aaaa01006859.1b $FI (indica cultivar-group) identical to two copies of
aaaa01047800.1a and aaaa01047800.1b (C-term)
11428 MEVILLPLVVIITSTMLLLLIISTAKNRHHGTANLPLPPAPPSVPVVGPLLWLVRAR 11598
11599 SNLEPAIRELHRRHGPILSLTFLSPRAAIFVSSREVTHRALVQRGHTFASRPPAIAPFAV 11778
11779 LTSGQCTVSSAPYGPLWRSLRRNLTSGVLGHGSRAPLYAPARRWALHLLTSDLAAASGNT 11958
11959 GGGVAVAVVDCLQFAMFSLLTYMCFGKRLDRRGVREIEAVQRELFSSYISFQVFAFCP 12132
12133 TVTKRLFFRRWQKVLSIRRRQEDIFLPLIEERRKRIKISSMDNDGSMVCCYVDTIISHK 12309
12310 LPKEAGDRRLTDGELVSLCTEFLTASVDTIVTALQWIMARVVEQPEIQAKLLDEINRV 12483
12484 VSSDKEHVDEEDIKSMAYLKALVLEGLRRHPPAHFLLSHAAVEETSLDGHRIPAGRSVNF 12663
12664 SVADVAHDENVWSRPEEFLPERFLDGGEGAGTDLTGSREIKMMPFGVGRRICPGLGLALL 12843
12844 QLEYFVANMVREFEWGMVDGDCGGGINLAERPEFTVIMEQPLRALVVPRRRE* 13002

>aaaa01007044.1 $PI (indica cultivar-group) seq gap at 5222 no Nterm exon
might be in this gap but also one frameshift so probably a pseudogene of an 
AP003523 like gene.
6146 DMFAGGSETTSTTLEWA 6196 (frameshift)
6196 PEVMQKAQAEIRHALQGKSRVTEDDLINLKYPKNIIKETMRLHPLASLLVPRKCQESCKI 6375
6376 LGYDIPKGTILIMNVWTIGRDHRYWDDAEVFIPERFEDTTIDFKGTHFEFIPFGAGRRMC 6555
6556 LGMTFAHATIELALTALLYHFDWHLPHGVTHDGMDMEEQFSVTVSRKRDLYLHPIQHVGVEEI* 6747

>aaaa01007181.1a (indica cultivar-group) orth AP003990.1h $F chr 2 99% 
N-term (orientation probably incorrect on either a or b)
1038 YLLLLPLLVVPLLYLAASSSRRSGRLRLPPGPWALPVIGHLHHLALAGAPTHRAMRDMAR 859
858  RHGPLMLLRFCELPVVVASSPDAAREIMRTHDVAFASRPIGPMLRLVFQGAEGVIFAPYG 679
678  DGWRQLRKICTVELLSHRRVHSFRPVRADELGRLLRAVADQAALSSSSPVNLTGMISAFV 499
498  ADSTVRAIIGSRSRHRDTFLRLVEDGLKIMPGMSLPDLFPSSRLAMLLSRVPAKI 334
333  ERRRRGMMGFIDTIIQEHQESRAAAEDEDLLDVLLRLQKDMDSQYPLTTMN 181
180  IKSILX 166
88    DMFGAGSETSATTLQWAMAELMRNPAV 2

>aaaa01007181.1b (indica cultivar-group) orth AP003990.1h $F chr 2 100% C-term
6892 VMRRAQDEVRRELAVAGNDRVTEDTLPSLHYLRLVIKETLRLHPPAPLLLPRECGGACKV 7071
7072 FGYDVPAGTMVLVNAWAIGRDAAAWGAAAEEFSPERFERCERDFRGADFELIPFGAGRRI 7251
7252 CPGMAFGLAHVELALAALLFHFDWRLPGGMAAGEMDMTEAAGITVRRRSDL 7404

>aaaa01007181.1c (indica cultivar-group) orth AP003990.1i $F chr 2 99%
8111 LPPGPWALPVIGHLHHLAGDLPHRALSALARRHGALMLLRLGEVQAVVASSPDAAREIMR 8290
8291 THDAAFASRPLSPMQQLAYARDAEGVIFAPYGDGWRHLRKICTGELLSARRVQSFRPVRE 8470
8471 AELVRLLRSVAEATSSSSSGSLVNLTELISAFVADSTVRAIIGSRFEHRDAYLRML 8638
8639 QDGLKIVPGMTLPDLFPSSRLALFLSRVPGR 8731
9019 DMFGAGSESSATVLQWTMAELMRNPRVMQKAQDEVRRALAGHDKVTEPNLTNLPYLRL 9192
9193 VIKETLRLHPPAPLLLPRKCGSTCKILGFDVPEGVMVIVNAWAIGRDPTYWDKPEEFVPE 9372
9373 RFEHNGRDFKGMDFEFIPFGAGRRICPGITFGMAHVELVL 9492 frameshift
9494 LYHFDWELPQGMAAKDLDMTEDFGVTTQRRSNLLVRPI 9607

>aaaa01007181.1d (indica cultivar-group) orth AP003990.1j $F chr 2 99%
10296 LLILLGSERRTAARTRLPPGPWALPVVGHLHHLAGGLPPNRAMRDLARWHGPLMLLRLGE 10475
10476 VEX 10481 frameshift
10486 VVASSPDAAREIMRTHDVAFASRPVGPMSRLWFQGADGLVFAPYGEAWRRLRRVCTQELL 10665
10666 SHRRVQSFRPVREDELGRLLRAVDAAAAAGTAVNLTAMMSTYVADSTVRAIIGSRRLKDR 10845
10846 DAFLRMLDELFTIMPGMSLPDLFPSSRLAMLVSRAPGRIMRYRRRMRRIMDSII 11007
11008 HEHQERRAAADAAGDDDDDDDEDLVDVLLRLQKEVGAQYPLTTENIKTVM 11157
11249 QDIFGAASETSSTTLEWVMAELMRSPSAMRKAQDEVRRALAAGAAGHDTVTEDILPNLNY 11428
11429 LKLVVKETLRLHPPAPLLAPRRCDSPREVLVLGHDVPAGATVLVNAWAIGRDTAAWGGAA 11608
11609 EEFSPERFERCERDFRGADFELIPFGAGRRMCPGMAFGLVHVE 11737

>aaaa01007189.1 $FI (indica cultivar-group) ortholog of AL662990.1
     MPSQLIAQNDHAYVLTFL
4128 MSIAMAILLLVALFYRIKKQAAAMAAKRKQQPKLPPGLATMPVVRNMHQMLMNKPVFRWIHR 3943
3942 LLDEMDTEILCLRFGRVHVIAVASPEMARELLRKKDAMLASRH 3814
3814 SSFASRTFSFGYKNTIMSPGGDQWRKMRRVLTSEILSPAMERRMLGRRVEEADHLVNYVY 3635
3634 GHCNDGTVDVRHVTRHFCGNIIRKLVFGRRHFNSGDGNIGPGRDEEAHIDALFTALDYHG 3455
3454 AFSVSDYFPTLVGLDLDGHEEVVNGLMNTFNRLHDPIIMERIEEWKSLRTKGDKRREVAD 3275
3274 FLDVLISLEDAQGKPFLSVDEIKAETL (0) 3194
2567 EIILATVDNPSNAVEWALAEMVNNPKVMKKAVDELDMVVGRERLVEESDIHNLTYLKACI 2388
2387 REAFRLHPYHPFNPPHVAIADTTVAGYMIPKGSHVMLSRIGLGRNPRAWDKPLEFQPERH 2208
2207 LKNTGTVVLAEPELRFVSFSAGRRGCPAVSLGTSITMMLFARLLQGFSWSIPPGGDRIEL 2028
2027 QESATSLQLSKPLFMQAKPRLLLHLYEADVLN* 1929

>aaaa01007242.1 $PI (indica cultivar-group) ortholog of AP003575.1 99%
11280 MAAVQLDSGLLIGFLFLATCLVVAVRSYLRSGGADGGRGGAAITSPPALPVIGNLHQLGR 11459
11460 GRHHRALRELARRHGPLFQLRLGSVRALVVSSASMAEAVLRHQDHVFCGRPQQHTARGTL 11639
11640 YGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGV 11819
11820 VNLTELIVGLTHAVVSRAAFGKKLGGVEPAKVRETVGELADLLGTIAVSDMFPRLRWVDW 11999
12000 ATGLDARTKRTAAKLDEVLEMVLRDHEQSRGDDDDDDGDGEARDLMDDLLSMANGGDDHG 12179
12180 YKLDRIDVKGLLILV (0)
      DMFAAGTDTVYKSIE frameshift
      MAEL 12359
12360 IKNPAEMAKVQAEVRHVVAAAHGGEGDEDAVVIVKEEQASS frameshift
12482 LGKMTLLRAAMKEAMRLHPPLPLLIPREAIQDTVLHGHRVAAGTRVMINAWAIGRDEAAW 12661
12662 EDAGEFRPGRFADGGDNAGVEYYGGGGDFRFMPFGAGRRGCPGMAFATRLAELVVANMAC 12841
12842 WFEWELPDGQDVQSFEPSRSSSREVCRLGSSSGKIGNHVYAVETT 12976

>aaaa01007286.1 (indica cultivar-group) orth AP003571.1e $F chr 6 100%
4839 YFYLGLALASLLVVLFARRRRSAAHGDGGLRLPPGPWQLPVIGSLHHLAGKLPHRAMRDL 4660
4659 ARRHGPVMMLRLGEVPTLVVSSRDAAREVMRAHDAAFASRPLSATVRVLTSGGRGIIFAP 4480
4479 YGGSWRQLRKIAVTELLTARRVASFRAIREEEVAAMLRAVAAAAAAGRAVELRAALSALV 4300
4299 AETTVRAVIGDRCKDRDVFLRKLQRTIELSAGFNPADLWPSSRLAGRLGG 4150
4149 AVREAEECHDTVYGILDGIIQEHMERTSSGSCGAGDGDGDGEDLLDVLL 4003

>aaaa01007309.1 (indica cultivar-group) 65% to CYP711
8043 QGTYVWLAPGVLARDAAQFPEPEEFRPERFAAEAAEERARHPYAHIPFGIGPRACVGHR 8219
8220 FALQQVKLAAVSLYRRYVFRHSPAMESPLQFDFDLVLAFRHGVKLRAIKRT 8372

>aaaa01007330.1a (indica cultivar-group) orth CYP72A18 $F AP002839 100%
5638 LLQVTMILYEVLRLYPPVVFLTRRTYKEMELGGIKYPAEVTLMLPILFIHHDPDIWGKD 5814
5815 AGEFNPGRFADGISNATKYQTSFFPFGWGPRICIGQNFALLEAKMAICTILQRFSFE 5985
5986 LSPSYIHAPFTVITLHPQHGAQIKLK 6063

>aaaa01007330.1b (indica cultivar-group) orth CYP72A17 $F AP002839 100%
8732 LMIDGADLWQVTMVLHEVLRLYPPVVMMNRRTYKEIELGGVRYPAGVMLSLPVLFIHR 8559
8558 DAAAWGHDAGEFDPGRFAEGVARACKDPGAGAFFPFSWGPRICIGQNFALLEAKVALGM 8382
8381 ILQRFAFELSPAYAHAPYTVLTLHPQHGVPVRLR 8280

>aaaa01007399.1 (indica cultivar-group) orth AC105746.1 $F chr 10 >99%
6641 SFLLVSIMLSLLLVLFSHLLQRIAAARRRLPPGPCPLPLIGNLLDIGDLPHRSFARLAER 6820
6821 YGPLMTVRLGAATCVVASSPATARAVLQTHNASLAGRGRQDAWHAGGHAENSVFVLPPGR 7000
7001 KWRLLRKLGAAHLFSRRKLAELAPLRDEIVGGLLRRVAERADHRGGAPVNVGRLALAANV 7180
7181 ELLWRSVFSTRLDAATLDVLCDVAREAAVLLGTPNVSDFFPAVAALDLQGLRRR 7342
7343 LAELMKNTYRLVDAQIDHRMGCRELRGGRGGEAMDLLDVLLDMSEQERED 7492
8017 DLFVGGSDSTATTVEWAMAELLQNPEIMKTLQQEIKMVLGTRSQVEESDIGQLPYLQ 8190
8191 AIVKETLRLHPIVPLRLYEAERTVEIEGHTIPKGSKVIVNAWAIHQSVKVWIQPEKFLP 8367
8368 ERFITKDIDFAGRHFEFIPFGSGRHICIGLPLANRMLHMILGSLMHQFKWTMPQMVNRNG 8547
8548 LDMAE 8562

>aaaa01007431.1a (indica cultivar-group) orth AP003990.1e $F chr 2 99%
lower case does not match japonica seq, but matches seq b
4252 NLPPSPSRLPFIGSFHLLRRSPLVHRALADVVRQLGAPPLMYMEIGEVPAIVVSCADAAR 4431
4432 EIMKTHDINFASRPWPPTVQKLRAQGKGIFFEPYGALWRQLRKICIVKLLSVRRVSSFHG 4611
4612 VREEEAGRLVAAVAATPPGQAVNLTERIKVAIADTTMRPMIGERFERREDFLEV 4773
4774 LPEIVKLASGFSLDDLFPSSwlagaiggsrrRGEAVNRASYELVDSAFRQRQQQKEAM 4947
4948 AAPPPDIAKEEEDDLMDELIRIHKEGSLEVPLTAGNLKAVI  5070
5313 ELFCAGSETSSNAIQWAMSELVRNPRVMEKAQNEVRSILKGKPTVTEADMVDLTY 5486
5487 VKMIVKETHRLHPVLPLLTPRVC*QTCQIMGYDVPQGSVIFINSWAIMRDPKHWDDAETF 5666
5667 KPERFEDSEIDLKGTNYEFIPYGAGRRICPGLALAQVSIEFILTTLLYHFNWELPKGAAP 5846
5847 KELDMTEDMGLTIRRKNDLYLLPTL 5921

>aaaa01007431.1b (indica cultivar-group)
10668 LPPGPWRLPVIGSLHHVVGDRLLHRSMARIARRLGDAPLVYLQLGEVPVVVASSPGAARE 10489
10488 VTRTHDLAFADRALNPTARRLRPGGAGVALAPYGALWRQLRKICVVELLSARRVRSFRRV 10309
10308 REEEAGRLVGALAAAAASPGEEAAVNFTERIAEAVSDAALRAMIGDRFERRDEFLQ 10141
10140 ELTEQMKLLGGFSLDDLFPSSWLASAIGGRARRAEANSRKLYELMDCAIRQHQQQRAE 9967
9966  AAVVDGGAGVEDDKNQDLIDVLLNIQKQGELETPLTMEQIKAVIL 9790
9595 DLFSGGSETSATTLQWAMSELIKNPMVMQKTQAELRDKLRRKPTVTEDDLSGLKYVKL 9422
9421 IIKETLRLHPVVPLLVARECRESCKVMGYDVPKGTTVFVNVWAIGRDPKYWDDAEEFRPE 9242
9241 RFEHSTVDFKGVDLEFIPFGAGRRICPGMAFAEAIMELLLAALLYHFDWELPNGMVASEL 9062
9061 DMTEEMGITVRRKNDLHLRPIL 8996

>aaaa01007506.1 (indica cultivar-group) orth AP003514.1 $F chromosome 6 99%
12081 MPHYRAWMSRYGKVFVSWSGATPALCVGDYAMVKQILSDRTGLYGKPEPGPSILALIGNG 11902
11901 LIFIGGDDWARHRRVVHPAFAMDKLKMMAKTMADCAREVIREWEARATADGERRVQVEVG 11722
11721 GQLQELTADVISHTAFGSSYREGKEVFVAQRELQSIAFSAINSTRFPGSQYIP 11563
11562 TKTNLRRRHLAKKVRGTLMAIIRERQAAAAKEDSGHGNDLLGLMLEANATDACGSGG 11392
11391 ENSMTMDEIVDECKTFFFAGHDTTSHLLTWAMFLLGTHPEWQHRLREEV 11245

>aaaa01007597.1 (indica cultivar-group) orth AL662934.1 $F chr 4 99%
8852 LVSLLTLPILLALLTRKSSSKKRKPPGPWNLPLIGGLLHLLRSHPQVALRELASKYGP 9025
9026 VMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLVSEIFCYDNLDVGFAPYGAYWR 9205
9206 MLRKLCTVELLSTKVVRQLAPVRNDETLTLVRNIEAASSCHGGGGGKKPVTLARLLTTCT 9385
9386 NTITAKAAFGQACGVELQEQFLTALDVGLKFSGGFCFGDLFPSLRFIDAMTGLRSC 9553
9554 LWRARGQLDSVFDKIIAQCEEHQGDSLVNVLLRIRDRGDLEFPFGTTNIKAIIL
     DMFTGGTETTSSAAEWVMSELMRNPEVMAKVQAEVR 9913
9914 RVFDNKSPQDHEGLIDNLRYMKMVIKETMRLNPVLPLLMPHLCRETCDIGGYEVVEGTR 10090
10091VVINSWAMARSPEYWDDAEEFKPERFEDGMADYKGSRFEYLPFGTGRRRCPGDTFGMVLL 10270
10271ELIVARLLYYFDWSLPAGMQPDDVDMDFVVTATTRRKNHLQLV 10399

>aaaa01007665.1 (indica cultivar-group) ortholog of AC104708.1a BI305681.1
runs off end
11936 AWIPEITSITSSMLDKWELQDEVRTEFEIDVNKEFHTLIADVISCVAFGSSYEE 11775
11774 GKRVFQLQEEQLKLVILAMRTVYIPGFR (2?)
      FVPTKK 11595
11594 NRRRKIVNQEIRNSLRKLIEINGRKCEDSNNLLGMMLSASKIDSEFKMGIEEIIDECKTF 11415
11414 YFAGKETTATLLTWATLLLALHQEWQNKARDEVLQVCGKYEHPKAENLSELKI (0)
      VSSSILY 11235
      VNMVLKETLRLYPPAVFLNRIANRDVKLGKLDIPAGTQ 11055
11054 LQLPILDIHHDVSIWGADADEFDPSRFAEGKSYHLGAYFPFGIGPTICVGQNLAMVEAKV 10875
10874 ALAMILQRFALVVSPSYVHAPMLVVTLQPQYGAQVLVHKI* 10752

>aaaa01007725.1 (indica cultivar-group) 74% to AL607001.1 chr 4, gene 2
5485 LVIYGVTLVIGWFLLHGVYRWMNPQCNGRLPPGSMGFPLVGETFQFFKQSPSIDMPGYYK 5306
5305 QRMK
2968 RYGPVFKTSLVGQPIVVSLDPEVNRFIFEQEGKLFRSWYPNTTNTIFGKKSVTVYTDT 2789
2788 VHKFIRSFASKLFGPNNMKELLLPELESSMRESFMTWAKEPSIDVKESISN 2633
2247 MIFDLIAKKMISLDRTKSRQLRKNFDEFFQGMVSFPIYFPGTQFYRCMQ 2101
1923 GRRNVQKTLTDILKERLSAPENRHNDLVDQIVQELQNDNPVIDVNFAVDAIAALLFASFA 1744
1743 TLSSTLAVGFKFLTDNPKVIEEL 1675
1336 EEHKKILKKRDDMNSGFTWEEYKSLVFTPQ
     VMNEITRISNVAPGIFRKTLVDVQ 1076
730 YTIPAGWLVMISPMAVHLNPKLFEDPLEFNPWRW 629

>aaaa01007897.1 $FI (indica cultivar-group) 
9748 MPAMAASLAWLLLALLLASLYTATHRIAAARRRLPPGPTPLPLVGNLLSVSRTSP 9584
9583 HRSLARLAARYGPLMRVRLGVVDYVVVSSPAVADDIYHSRHNAHLSSRPPYDAWWGEKHR 9404
9403 LNSVIALPPHAVWRAQRRLAMEEVMSPGRLDALAPLRREKVRELLVRVRRVAAA 9242
9241 RGDGDGELVPVEVGQAAFEGFLSILSSTMVSVDLADSDLRDVVREAAILAATPNVSDIF 9065
9064 PAIAAADLQGYRRRMGELVARGYGIFEELLARRKGGREAGERRKDDLLDVVL 8909
8908 DREDELKKESNPVLDRNAIKGLIT (0)
7478 DLMVAGTDTSSSTIEWAMAELLQNSESMQKVKDELRRVIGTRTQIEESDISHLPYLQAII 7299
7298 KETLRLHSNVPMSYYMAEATVEVQGYTIPKGTNIIVNIWAIHHQPNVWVDPDKFMPERF 7122
7121 IGKDTNFFGKHPELIPFGGGRRICLGLPLAYRMVHVVLASLLFHFDWKLPEGAKKDGIDM 6942
6941 SEKFGLVLSMATPLKALATRSCNDM* 6864

>aaaa01008113.1 $FI (indica cultivar-group) 
6975 MELTTISPVFLISLLGVPLLYLLWSKASKSPSGAPAAPPPPPGPTPFPVIGNIPDLLRGGEL 7160
7161 HRALTGLAASYGPVMSLRFGMASTVVLSSPDVAHEALHKKDGAISSRWVPDNANVLGHQD 7340
7341 VSMAWLPSSSPLWKHMRTLASTLLFTSRRLGASRGIRERKARELVDYLGARSGRPVRVGL 7520
7521 AVFGSVLNFMSNVFFSEDVVELGSETGQEFQQLIADSVAETAKPNISDFFPFLSA 7685
7686 LDLSRRRRAAAKNLKKFYDFFDDVIDRRLSSGEKPGDLLDSLLELHAKSQL 7838
7839 ERPLIRALMT (0) 7868
8303 DLFIAGSHTTTTTVEWALAELLRNPSKMAKARAELGEAFGRGAIEEGELARLPYLNAVI 8479
8480 KETLRLHPPAPLLLPHRVSSDSEPAGGVTLGGYSVPSGARVLINAWAIGRDPAAWSPEPD 8659
8660 AFSPERFLGREADYWGRTLEFIPFGSGRRACPGIPLAVAVVPMVVAAMVHSLEWRLPEGM 8839
8840 APGDVDVGDRFGAVLELATPLWAVPVKV* 8926

>aaaa01008150.1 (indica cultivar-group) orth of AP004139.1 $F chr 2, 86B like
9567 DDLLSRFMRKGSYSDESLQHVALNFILAGRDTSSVALSWFFWLVSTHPAVERKIVREL 9394
9393 CTVLAASRGADDPALWLAAPLNFEELDQLVYLKAALSETLRLYPSVPEDSKHVVADDYLP 9214
9213 DGTFVPAGSSVTYSIYSAGRMKTVWGEDCLEFRPERWLSADGSKFEPHDSY