>CYP51G1
Scaff LG_I (-) 4925909-4924104
fgenesh1_pm.C_LG_I000188|Poptr1
gene model correct
84% to Arab. 51G1 95% to Scaff LG_III CYP51G5
seq.
$
4925909
MTGDTDNKFLNVGLLIIATLLVAKLISALIMPRSQKRLPPVMKGWPLIGG 4925760
4925759
LIRFLKGPIVMLREEYPKLGSVFTVNLVNRKITFLIGPEVSAHFFKASEV 4925610
4925609
DLSQQEVYQFNVPTFGPGVVFDVEYSIRQEQFRFFTEALRVNKLKGYVDQ 4925460
4925459 MVVEAE 4925442 (0)
4925102
DYFLKWGDSGVVDLKYELEHLIILTASRCLLGREVRDKLFDDVAALFHD 4924956
4924955 LDNGMLPVSVLFPYLPIPAHRRRDRARKKLAEIFANIINSRKLASKSEND
4924806
4924805
MLQCFIDSKYKDGRPTTESEITGLLIAALFAGQHTSSITSTWTGAYLLRH 4924656
4924655
NEYLSAVLEEQKNLMKKHGNKVDHDILSEMDVLYRCIKEALRLHPPLIML 4924506
4924505
LRSSHSDFSVTTRDGKEYDIPKGHIVATSPAFANRLPHVFKDPDSYDPDR 4924356
4924355 FAYGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFELE
4924206
4924205
LISPFPEIDWNAMVVGVKDKVMVRYKRRELSVN* 4924104
>CYP51G5
Scaff LG_III (+) 14476000-14477787
eugene3.00031308|Poptr1
gene model correct
83% to Arab. 51G1 95% to Scaff LG_I CYP51G1
seqF.
$
14476000 MTKDTDNKFLNVGLLILATLLVAKLISALIMPRSQKRLPPVMKGWPLIGG
14476149
14476150
LIRFLKGPIVMLREEYPKLGSVFTVNLANWKITFLIGPEVSAHFFKASEA 14476299
14476300
DLSQQEVYQFNVPTFGPGVVFDVDYSIRQEQFRFFTESLRVSKLKGYVDQ 14476449
14476450
MVVEAE 14476467 (0)
14476789 DYFSKWGDSGVVDIKYELEHLIILTASRCLLGREVRDKLFDDVSALFHD
14476935
14476936
LDNGMLPISVLFPYLPIPAHRRRDRARKKLAEIFANIINSRKLAGKSEND 14477085
14477086
MLQCFIDSKYKDGRPTTESEITGLLIAALFAGQHTSSITSTWTGAYLLRH 14477235
14477236
NEYLSAVLEEQKNLMKKHGNKVDQDILSEMGVLHRCIKEALRLHPPLIML 14477385
14477386 LRSSHSDFSVTTRDGKEYDIPKGHIVATSPAFANRLPHVFKDPERYDPDR
14477535
14477536
FAAGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFE 14477685
14477686
LISPFPETDWNAMVVGVKDKVMVRYKRRELSVN* 14477787
>CYP71B41-de1
LG_VIII (-) 12482829-12482572
eugene3.00081725|Poptr1
N-term only
71B like 100% to LG_VIII.4 LG_VIII.10
LG_VIII.16
$
12482829
MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12482680
12482679
QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSA 12482572
>CYP71B44P
LG_I
(+) 19811612-19812590
fgenesh1_pg.C_LG_I001954
[Poptr1:64602]
model short exon 1
71B
like pseudogene 51% to 71B36
53% to 71B41
$
19811612
MACHDPLIMWSLPLVLFFSLLMFLLIRKKQNKQQIPPTPPRLPIIGNLHQLGDLS 19811776
19811777
QRSLWQLSKKYGPVILLKLGAVPAVVISSAEAAKEVLKTNDLHACSRPLL 19811926
19811927 AGTGRLSYNYSDVSFTYTYGDYWRKM*KICVLELCSARRVQSFLF
19812061
19812135
IREEEVALLIDTISAYSFSATPVDLSEKILSFTANITCRAAFGK 19812266
19812267
SFQEIKGFDGKRFEEVIREASAILASFSAADFFPKDGWIIERLTG 19812401
19812402 LLHSRLERSFRELDVLYRRVIDDHIKLEE
19812485
19812486
EEKEDIVGGPLKL*RDQTEFGTIQLTHDHIKAKLM 19812590 (0)
>CYP71B40v1
LG_VIII.4 (-) 12489221-12487004
eugene3.00081726|Poptr1
gene model short at N-term
71B like 53%
to 71B36 97%
to LG_VIII.16
$
12489221
MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12489072
12489071 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDVAF
12488922
12488921
CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKILTLELFSLKRVQSFRF 12488772
12488771
IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS 12488622
12488621
FDRDKFHEVVHDTVAVVGSISADESIPYLGWIVDRLTGHRARTERVFHEV 12488472
12488471
DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKEQTELGASQFTKDNIKAILL 12488316 (0)
12487621
NLFMAGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12487472
12487471
DQLEYLRMVIKETLRLHPPGPLLIPRETMSHCKVSGHNIYPKMLVQINVW 12487322
12487321 AIGRDPRYWKDPEEFFPERFLDRSIDYKGQSFEYLPFGSGRRICPGMHMG
12487172
12487171
SITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12487022
12487021 VNYLP* 12487004
>CYP71B40v2
scaffold_994 (+) 9952-10569
fgenesh1_pg.C_scaffold_994000003|Poptr1
duplicate seq
CYP71B40 100% match exon 2
$
9952 NLFMAGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 10101
10102
DQLEYLRMVIKETLRLHPPGPLLIPRETMSHCKVSGHNIYPKMLVQINVW 10251
10252
AIGRDPRYWKDPEEFFPERFLDRSIDYKGQSFEYLPFGSGRRICPGMHMG 10401
10402
SITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVPVNYLP* 10569
>CYP71B41
LG_VIII.16 (-) 12479032-12476806
eugene3.00081724|Poptr1
gene model short at N-term
71B like 54%
to 71B36
$
12479032
MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12478883
12478882 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDLAF
12478733
12478732
CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKIVTLELFSLKRVQSFRF 12478583
12478582
IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS 12478433
12478432
FDRDKFHEVVHDTEAVAGSISADESIPYLGWIVDRLTGHRARTERVFHEL 12478283
12478282
DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKEQTELGASQFTKDNIKAILL 12478127 (0)
12477423
NLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12477274
12477273
DQLEYLRMVIKETLRLHPPAPLLIPRETMSHCKVSGHNIYPKMLVQINVW 12477124
12477123 AIGRDPTYWKDPEEFFPERFLDSSIDYKGQSFEYLPFGSGRRICPGMHMG
12476974
12476973
FITMEIILANLLYCFDWVYPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12476824
12476823 VNYLQ* 12476806
>CYP71B38
LG_VIII.10 (-) 12547429-12545187
fgenesh1_pg.C_LG_VIII001676|Poptr1
gene model short on the N-term
71B like 54% to
71B36 97% to LG_VIII.4
$
12547429
MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12547280
12547279
QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDLAF 12547130
12547129
CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKVLTLELFSLKRVQSFRF 12546980
12546979 IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS
12546830
12546829
FDRDKFHEVVHDTEAVAGSISADESIPYLGWIVDRLTGHRARTERVFHEL 12546680
12546679
DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKDQTELGASQFTKDNIKAILL 12546524 (0)
12545804
NLFLGGVDTISLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12545655
12545654
DQLEYLRMVIKETLRLHPPAPLLITRETMSHCKVSGHNIYPKMLVQINVW 12545505
12545504
AIGRDPTYWKDPEEFFPERFLDSSIDYKGQSFEYLPFGSGRRICPGMHMG 12545355
12545354
FITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12545205
12545204 VNYLQ* 12545187
>CYP71B43P
LG_X.28 (-) 6738703-6736564
fgenesh1_pg.C_LG_X000579|Poptr1
gene model wrong 2 frameshifts
71B like 52%
to 71B36 86% to LG_VIII.4
possible pseudogene or two seq. errors.
$
6738703 MALYAVPLWLPLILLLPLLLLFMKRMKDAGQSEQLLPPGPP 6738581
6738581 KLPILGNLHQLSSLPHQSMWHLSKKYGPVMLLRLGQIPTVVISSAEAA
6738438
6738437
REVLKVHDLAFCSRPLLSGAGRLTYNYLDIAFSPYSDHWRNMRKIVTLEL 6738288
6738287
FSLKRVQSFRFIREEEVGFLVNSLSESSALAAPVDLTQKVYALVANITFR 6738138
6738137 VAYGFDYRGTTFDRDRFHEVVHDTEAVVGSISADEYVPYLG 6738015
6738015 MIVDWLTGHRARMERVFHELDTFFQHVIDNHLKPGRIKDHDDMIDV
6737878
6737877 LLRIEKEQTELGASQFTSDNIKAVLL 6737800
(0)
6737179
NLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGKKGRVTEGDV 6737030
6737029
DQLEYLRMVIKETLRLHPPAPLLLPRETMSHCIVSGYNIYPKTLVHVNVW 6736880
6736879 AIGRDPKYWRDPEEFFPE 6736826
6736827
RFLDSSCDFNGQSFEYLPFGSGRRICPGIHMGSITVEIILSNLLHCFDWI 6736678
6736677
LPHGMQKEDINMEEKAGVSLAPSKKTPVILVPVNYLQ* 6736564
>CYP71B42P
LG_VIII.30 (-) 12460686-12458958
eugene3.00081722|Poptr1
gene model short, frameshifts
71B like pseudogene 95% to LG_VIII.31
54% to 71B24
$
12460686 MAFYILPLALLLLLLFPLPLILKKKQQ 12460608
12460608 KLYVLELFSLK 12460576
12460577
RVQSFRFIREEVISLLMNSISQSSSPATPVNLTQMLYSVFASIVFGMALG 12460428
12460427 KSFQGSDFHNERCRKSIHEAE 12460365
12460365 GHNRMLITGYDARIERVFLELDTLFQQVIDDHLKAERKERKEDIINVLLKMERDQT
12460198
12460197 ESSAPQLTKYNIKAVIL 12460147 (0)
12459572
NIFLGGVDTGAITVIWATAEIARNPIIMKKAQEEIRSSVGQKGRATEERT 12459423
12459422
DELQYLKMVIKETLRLHPPAPLLLPRETMSRCQINGYDIYLKTLIQVNAW 12459273
12459272 AIGRDPEYWRDSEEFFPERFVDSPIDYKGQRFEFLPFGSGRRVCPGILMG
12459123
12459122 VTMVELALANLLHCFDWKLPNAV 12459054
12459053 AINMEEAAGLTISKKNPLFLVRINYPQQAQPD 12458958
>CYP71B39P
LG_VIII.31 (-) 12534486-12532739
eugene3.00081733|Poptr1
gene model short, frameshifts
71B like pseudogene 95% to
LG_VIII.30
$
12534486 LLLLLLFPLPLILKKKQQ 12534433
12534433 KLYVLELFSLK 12534401
12534402
RVQSFRFIREEVISLLMNSISQSSSPATPVNLTQMLYSVFASIVFRMALG 12534253
12534252
KSFQGSDFHNERCRKAIHEAE 12534190
12534190 GHNRMLITGYDARIERVFLELDTLFQQVIDDHLKAERKERKEDIINVLLKMERDQT
12534023
12534022 ESSAPQLTKYNIKAVIL 12533972 (0)
12533397
NIFLGGVDTGAITVIWATAEIARNPIIMKKAQEEIRSSVGQKGRATEERT 12533248
12533247
DELQYLKMVIKETLRLHPPAPLLLPRETMSRCQINGYDIYLKTLIQV 12533107
12533107
NAWAIGRDPEYWRDSEEFFPERFVDSPIDYKGQRFEFFPFGSGRRVCPGI 12532958
12532957 VMGVTMVELALINLLYCFDWKLPNAV
12532880
12532879 DINMEEAAGLTISKKMPLFLVPINYPQRAQPDKMSRTSLLSKHTCS*
12532739
>CYP71B45P
LG_X (-) 6735316-6733923
fgenesh1_pg.C_LG_X000578|Poptr1
71 like I-helix + C-term (pseudogene?)
71 like pseudogene 75% to CYP71B42P
downstream of fgenesh1_pg.C_LG_X000579
$
6735316
ILSLGRTPTLVVSSAEAARAVLKTHDLDCCCRPRLSGSGRLTYNHVYVAF 6735167
6735166
APYGDYW*EMRKLFVLEPFILKRVQSFRFITGEVARIMNSIPQSSS 6735029
6734867 PYAG*ILDKVTDHHARIERVLH 6734802
6734482 NIFLGGVHAGAITVIWALEELAWNPRTMKKAQDEIRNSVGKKGRLAEESI
6734333
6734332 DEL 6734324
6734322 TLVIKETLRWQ 6734290
6734288
PPAPLLLPRETMSHCKINGYHIYPKILIQINV*AIGSDPTYWNDS*EFF 6734142
6734141
PERFVDSSID*KGQHFEFLPFGSGRRGCPGILMGVTMVELALANLLYCLDW 6733989
6733988 KSAKAIDINMEEAAGLTISKKM 6733923
>CYP71D38-de2b
scaffold_710 (-) 1341-893
eugene3.07100001|Poptr1
gene model short
pseudogene 89% to 726B1 J-helix to end
$
1341 VIKNPRVLEKAQKEGRQVFND 1279
1276
LGTIPDETSLHDSKFLKLIIKETLRLHPPAPLMIPIECRKRYNVNGYDTHVKSKVLINAWAIGRDP 1079
1078 NYWNELERFYPERFINVSTDFKGIDFEFIPFGAGKRMCPGKL 953
953
VKRIRDLKLIPV 918
916 SYRSLVG* 893
>CYP71D38
scaffold_710 (-) 19864-18128
eugene3.07100003|Poptr1
no comment
726A like 50% to 726A1 euphorbia
$
19864 MLISLPVFLTILLVISILWTWTKFIKSNKSSSNPPPGPWKLPFIGNLHQL
19715
19714
VHPLPHHRMRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVMKTHEINFV 19565
19564
ERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVRSFKSI 19415
19414
REEEVSNFIASIYSKEGSPINLSRMIFSLENGITARTSIGNKCKNHEGFL 19265
19264 PIVEELAEALGGLNMIDIFPSSKFLYMVSRVRSRLERMHREADEILESII
19115
19114
SERRANSALASKMGKNEEDDLLGVLLNLQDHGNLEFQLTTSTIKAVIL 18971 (0)
18748
EMFSGGGDTSSTALEWAMSELIKNPRVMEKAQKEVRQVFNDLGTIPDETS 18599
18598
LHDLKFLKLIIKETLRLHPPVPLIPRECRKRCDVNGYDIHVKSKVLINAW 18449
18448 AIGRDPNCWNEPERFYPERFINVSTDFKGSDFEFIPFGAGKRMCPGMLFA
18299
18298
TANTEFPLAQMLYHFDWKPAGGLKPENLDMTESFGGAVKRKQDLKLIPIS 18149
18148 YRSLVG* 18128
>CYP71D38-de2c
scaffold_710 (-) 21263-20928
no
model
no
comment
pseudogene
79% to 726B1 C-term
$
21263 NDLGTILDETS 21231
21213 LKLITEETLRLHPSAPLIPREWRKRCQVNGYD
21118
21117 NIHVKSKVLINAWA 21076
21085 CMGMLFAIA 21059
21059
HHFDWKPIDGLKPENLDMTESLGGATKRKRDLKLIFISYRSLVG 20928
>CYP71D23P
LG_XV.1 (+) 7113294-7114921
fgenesh1_pg.C_LG_XV000688|Poptr1
gene model wrong 2 frameshifts and a stop codon
71D like possible
pseudogene 46% to 71D10 57% to LG_VII.22
$
7113294
MEQHFPLFAIFLTFLLFIFMVLRMRKKSETNKYLTTNPPPGPWKLPLVGN 7113443
7113444
IHHVAGHQIHHRFTDLARKYGPVMQILLGEVRFVVISSRETAKEVMKTNE 7113593
7113594 NIIVDRPDGVIPRIVFYNGKAISFTPYGEYWKQLRKSCSSKLLSPQCVRS
7113743
7113744
LIRSTMEEEVSDFVTSISSKEGSPINLSKMLFTLTFGLISRVILGKKGKN 7113893
7113894
QALLSSIEEWKQGGAGFDVADIFPSFKLFHSLGWARSKFVRQHQEIGEML 7114043
7114044
ETVINERRASKIRTKTSEHEIEEDFLDVLVNMQHALR 7114154
7114156 NLEFTNDNIKAILL 7114197 (0)
7114292
EFFLAGSDSSSAVMEWAMSEMLKNPRHMKRAQKEVRVVFTKMGNDDETRL 7114441
7114442
HELKYLQLIIKETTRLHPPAPLILRACREACKINGHDIPDRSNVMINAWA 7114591
7114592 IGRDPTYWNEA* 7114627
7114628
KFNPERFLDSSIDYMGTNFEFIPFGAGKRKCPGMAFGLAIVEMALAKLLY 7114777
7114778
IFDWKLCDGVKNEDLNMKEDTALGSTVKRKHELYLIPIPYHPSSPAK* 7114921
LG_VII.22 (+) 5888964-5891028
fgenesh1_pg.C_LG_VII000682|Poptr1
gene model correct
71D like 50%
to 71D4, 75% to LG_VII.12
$
5888964
MEFPILLASLLFIFAVLRLWKKSKGNGSTLALPPGPWKLPLIGNIHQLAG 5889113
5889114
SLPHHCLTDLAKKYGPVMQLQIGEVSTVVVSSGEAAKEVMKTHEINFVER 5889263
5889264
PCLLVANIMFYNRKNIGFAPYGDYWRQMRKVCTLELFSAKRVRSFRSVRE 5889413
5889414
EEVSNFIRNIYAKAGSPINLSKMMLDLSNGVIARTSIGKKSKNQEAFLPI 5889563
5889564 IEDVAEALAGLNIVDVFPSAKFLYMISKLRSRLERSHIEADEILENIINE
5889713
5889714
RRASKEERKTDQDNEVEVLLDVLLNLQNQGNLEFPLTTDSIKAIIV 5889851 (0)
5890402
EMFGAGSETTSTLLEWSMSEMLKNPRVMKKAQEEVRQVFSDSENV 5890536
5890537
DETGLQNLKFLKLIIKETLRLHPPISLIPRECSKTCEINGYVIQAKSKVI 5890686
5890687 INAWAIGRDSNDWTEAEKFYPERFQDSSIDYKGTNFEFIPFGAGKRMCPG
5890836
5890837
MLFGIGNAELLLARLLYHFDWKLSSGAALEDLDMNEAFGGTVKKKHYLNL 5890986
5890987 IPIPYGPCPLPVE* 5891028
>CYP71D42
LG_VII.3 (-) 5804810-5802796
eugene3.00070713|Poptr1
gene model seems correct
71D like 49%
to 71D4 99% to LG_VII.27
note these two gene names were both assigned to the same
sequence
$
5804810 MDQVFQFIYILIVPFLLLIFPVLRLWKKSQGNNSSTPPPPPGPWKLPLIGNLHQLL 5804643
5804642
GSLPHQVLRDMANKYGPVMQLQIGEVPTVIISSPEAAKEAIKTHEINFVD 5804493
5804492
RPCLLVAKVMFYNSKDIAFAPYGDYWRQMKKVCVLELLSAKRVKSFRSIR 5804343
5804342
EEEVSNFMRTIYSKAGSPINLSKMMFDLLNGITARASVGKKYKHQEAFLP 5804193
5804192
IIEQVIEAMGGTNIADVFPSSKLLYMISRFRSRLERSHQDADVILENIIY 5804043
5804042
EHRVRREVAKTDEESEAEDLLDVLLNLQNHGDLGFPLTTDSIKATIL 5803902 (0)
5803416 ELFTAGSDSSSTLMEWTMSEMLRNPRVMRKAQEEVRQVFSNTEDVDETCL
5803267
5803266
HNLEFLKLIIKETLRLHPPAPFIPRECNKTCEINGYVIQAKSKVMINAWA 5803117
5803116
IGRDSDHWTEAEKFYPERFLDSSIDYMGTNFEFIPFGAGKRMCPGILFGI 5802967
5802966
ATVELPLAQLLYHFDWKLPNGDLSEDLDMNEVFVGTVRRKHQLNVIPIPF 5802817
5802816 YPSPLQ* 5802796
>CYP71D43
LG_VII.12 (-) 5753477-5751477
estExt_fgenesh1_pg_v1.C_LG_VII0660|Poptr1
gene model seems
correct
71D like 48% to 71D4 94% to LG_VII.3
$
5753477 MEQVFQFIQILVPFLLLIFTVLRLWKKSQGNNSSTPPPP
5753361
5753360 PPPPPGPWKLPLIGNLHQLLGSLPHQVLRDMANKYGPVMQLQIGEVPTVI
5753211
5753210
ISSPEAAKEAMKTQEINFVDRPCLLVAKVMYYNSKDIGFAPYGDYWRQMK 5753061
5753060
KVCVLELLSAKRVKSFRSIREEEVSNFIRAIYSRAGSPINLSKMMFDLLN 5752911
5752910
GITARASVGKKYKHQEAFLPIIEQVIEAVGGTNIADVFPSSKLLYMISRF 5752761
5752760
RSRLERSHQDADVILENIIYEHRVRREVAKTDEESEAEDLLDVLLNLQNH 5752611
5752610 GDLGFPLTTDSIKATIL 5752560 (0)
5752097
ELFAGGSDTSSTLMEWTMSEMFRNPRVMRKAQEEVRQVFSNTENVDETCL 5751948
5751947
HNLEFLKLIIKETLRLHPPVPFIPRECNKTCEINGYVIQAKSRVMINAWA 5751798
5751797 IGRDSDHWTEAEKFYPERFLDSSIDYKGTNFDFIPFGAGKRMCPGILFGI
5751648
5751647
ATVELPLAQLLYHFDWKLPNGDLLEDLDMNEVFGGTVRRKHQLNLIPIPF 5751498
5751497 YPSPLQ* 5751477
>CYP71D24P
scaffold_228 (-) 35436-34671
eugene3.02280006|Poptr1
no comment
71D like 2 copies exon 1 pseudogene
$
35436 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQLASSATMP 35266
35266 HYLCAHWARKYG
35231
35234 RTPPLGPWKLPLIGNIHQLASSATMP 35157
35180 LASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVIISSPDAAKEVLKT
35040
35039 QEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRKACIWGLFSATRK
34890
34889
LSFRSIREEEVSNLISSIRSKEGSPINLRELLLDLSNETITRTSIGKKCK 34740
34739 NKARFLHTIEQVSKSVGGVNIFL 34671
>CYP71D25Pv1
scaffold_228 (-) 39559-38903
eugene3.02280007|Poptr1
no comment
71D like 62% to LG_VII.22 41% to 71D4
exon 1 pseudogene
100% to scaffold_228 (-) 34668-35436
$
39559 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQ
39413
39412
LASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVIISSPDAAKEVLKT 39272
39271 QEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRKACIWGLFSATRK
39122
39121
LSFRSIREEEVSNLISSIRSKEGSPINLRELLLDLSNETITRTSIGKKCK 38972
38971 NKARFLHTIEQVSKSVGGVNIFL 38903
>CYP71D25Pv2
scaffold_1911 (+) 7175-8184
fgenesh1_pg.C_scaffold_1911000001|Poptr1
contains a duplication from exon 1 identical in seq to
each other in overlap region
71V like 37% to 71V5
almost identical to 71D25P 2 aa diffs probable duplicate sequence
$
7175 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQLASSATMPHYLCAHWAKKYG 7381
7381 TPPPGPWKLPLIGNIHQLASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVII 7536
7537
SSPDAAKEVLKTQEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRK 7686
7687
ACIWGLFSATRKLSFRSIREEEVSNLISSIRSKAGSPINLRELLLDLSNE 7836
7837
IITRTSIGKKCKNKARFLHTIEQVSKSVGGVNIVDLFPSARLVHMISNMT 7986
7987 SSLQRLHEETDQMLEDIINERRASRVEKKTGENKIEAGDDLLDVLLNLQD
8136
8137 DGNFKVKTDSIKSIIL 8184 (0)
>CYP71D36Pv1
LG_I (-) 29491328-29490406
eugene3.00012614|Poptr1
no comment
mid regioN to EXXR 71D like
71D like EXXR 61% TO CYP71D26
29491328 DTVDVLLNL*GQADLEFTLTTKNIKAIIL 29491242 (0)
29490942 DMFVAGSETSSRTVEWAK 29490889
29490889 TELAKHPKVMEKAQAEARQVFANVDEAGLHKLDHLQLLIKETL 29490761
29490759
NIPPIPLLFPRESKEACKITGYDMPAQSKVTVNIWGIGREPINWTEPERFYP 29490604
29490603 ERFLDSSMDYKGIDFKFIPFGAG 29490535
29490534 ILFGMATYVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS*
29490406
>CYP71D36Pv2
scaffold_1517 (-) 9207-8703
eugene3.15170002|Poptr1
gene model wrong
3 aa diffs to 71D36P, duplicate seq.
$
9207 LNEMAKHPKVMEKAQAKARQVFANVDEAGLHKLDHLQLLIKETL 9076
9074 NIPPIPLLFPRESKKACKITGYDMPAQSKVTVNIWGIGREPINWTEPERFYP
8919
8918 ERFLDSSMDYKGIDFKFIPFGA 8853
8852 GILFGMATVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS*DEK*SLH
8703
>CYP71D35Pv1
LG_I (-) 29497891-29497622
no model exists
no comment
71B like pseudogene
98%
to scaffold 1517, 93% to scaffold 6967, 47% to 71B18
$
29497891 KVTVNIWRIGREPINWTEPER 29497829
29497826 FYPERFLDSSMDYKGIDFKFIPFGAGILFGMAT
29497728
29497726
TVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS 29497622
>CYP71D36Pv3
scaffold_6967 (-) 2023-1561
eugene3.69670001|Poptr1
gene model wrong
100% to 71D36Pv2
$
2023 LNEMAKHPKVMEKAQAKARQVFANVDEAGLHKLDHLQLLIKETL 1892
1890
NIPPIPLLFPRESKKACKITGYDMPAQSKVTVNIWGIGREPINW 1759
1758
TEPERFYPERFLDSSMDYKGIDFKFIPFGAGILFGMATVVLPLAQLLCFL 1609
1608 DWIPPNGLRSADLVTS 1561
>CYP71D34
LG_I.29 (-) 29516258-29514652
eugene3.00012615|Poptr1
gene model short one frameshift
71D like 52%
to 71D10 93%
to LG_I.2
$
29516258
MEQLQTPPSLVLLPSLLFIFMVLRMLKKSKSKDLTPNLPPGPRKLPVIGN 29516109
29516108
LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMKVHD 29515959
29515958 INFAHRPHLPVGQIIFYNCTDIATA 29515884
29515882
AAYGDYWRQLRKVSILELLSPKRVQSFRSIREEEVSSLIGSISSSAGSII 29515733
29515732
NLSRMLFSVAYNITTRAAFSKLRKEEEIFVPLVQGIIQVGAGFNISDLFP 29515583
29515582
SIKLIPWITGMRSRMERLHQEADRILESIINDHRARKAEGNSSNESKADN 29515433
29515432 LVDVLLDLQEHGNLDFSLTTDNIKAVIL
29515349 (0)
29515263
DIFIAGTETSSTILQWAMSELLKHPEVMEKAQTEVREAFGKDGSVGELNY 29515114
29515113
LKMVIKETMRLHPPLPLLLPRECREECGINGYNIPIKSRVLVNVWAIGRD 29514964
29514963
SDYWVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRR 29514853
29514852 MCPGILFGISNVDLLLANLLYHFDWKLPGDMEPESLDMSEAFGATVRR
29514709
29514708 KNALHLTPILHHPHPVRS* 29514652
scaffold_11610
(-) 1395-784
eugene3.116100001|Poptr1
gene model wrong exon 2 only
71D LIKE 96% to 71D34
$
1395 DLFIAGTETSSTILEWAMSELLKHPEVMEKAQTEVREVFGKDGSVGELNY
1246
1245
LKMVIRETMRLHPPLPLLLPRECREECGINGYNIPIKSRVLVNVWAIGRD 1096
1095
SNYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRRMCPGILFGISNVD 946
945 LLLANLLYHFDWKLPGDMKLESLDMSEAFGATVRRKNALHLTPILHQPHPVRS*
784
>CYP71D33P
LG_I
(-) 29524379-29524047
eugene3.00012616
[Poptr1:550175]
model
short
71B
like pseudogene
$
29524379
VWAIGRDSDYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRR 29524248
29524247
MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29524104
29524103 KNALHLTPILHHPHPVRS* 29524047
>CYP71D32P
LG_I
(-) 29530020-29529344
eugene3.00012617
[Poptr1:550176]
no
comment
71B
like pseudogene
$
29530020
MEQPQIPSCLVLLPSLLFIFMVLRMLKKSKTKDLTPNLPPGPRKLPVIGN 29529871
29529870
LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMK 29529730
29529676 VWAIGRDSNYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRR
29529545
29529544
MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29529401
29529400 KKALHLTPILHHPHPVRS* 29529344
>CYP71D31P
LG_I (-) 29532948-29532496
eugene3.00012618|Poptr1
no comment
71B like pseudogene C-term
$
29532948
VIRETMRLHPPLPLLLPRECREECGINGYNIXIKSRVLVNAWAIGRDSNY 29532799
29532798 WVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRR
29532697
29532696
MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGAAVRR 29532553
29532552 KNALHLTPILHHPHPVRS* 29532496
>CYP71D30P
LG_I
(-) 29540735-29539563
eugene3.00012620
[Poptr1:550179] gene start
eugene3.00012619
[Poptr1:550178] gene end
71B
like PSEUDOGENE 2 models are from same gene
$
29540735
MEQLQIPTSLVLLSSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGN 29540586
29540585 LHQLFCSLPHHRLR 29540544
29539973
LLPRECREECGINGYNIPIKSRVLVNVWAIGRDSNYWVEAERFQPERFLD 29539824
29539823 SSIDYKGVNFEFTPFGAGRR 29539764
29539763
MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29539620
29539619 KNALHLTPILHHPHPVRS* 29539563
>CYP