>CYP51G1

Scaff LG_I (-) 4925909-4924104

fgenesh1_pm.C_LG_I000188|Poptr1

gene model correct

84% to Arab. 51G1 95% to Scaff LG_III CYP51G5 seq.

$

4925909 MTGDTDNKFLNVGLLIIATLLVAKLISALIMPRSQKRLPPVMKGWPLIGG 4925760

4925759 LIRFLKGPIVMLREEYPKLGSVFTVNLVNRKITFLIGPEVSAHFFKASEV 4925610

4925609 DLSQQEVYQFNVPTFGPGVVFDVEYSIRQEQFRFFTEALRVNKLKGYVDQ 4925460

4925459 MVVEAE 4925442 (0)

4925102 DYFLKWGDSGVVDLKYELEHLIILTASRCLLGREVRDKLFDDVAALFHD 4924956

4924955 LDNGMLPVSVLFPYLPIPAHRRRDRARKKLAEIFANIINSRKLASKSEND 4924806

4924805 MLQCFIDSKYKDGRPTTESEITGLLIAALFAGQHTSSITSTWTGAYLLRH 4924656

4924655 NEYLSAVLEEQKNLMKKHGNKVDHDILSEMDVLYRCIKEALRLHPPLIML 4924506

4924505 LRSSHSDFSVTTRDGKEYDIPKGHIVATSPAFANRLPHVFKDPDSYDPDR 4924356

4924355 FAYGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFELE 4924206

4924205 LISPFPEIDWNAMVVGVKDKVMVRYKRRELSVN* 4924104

>CYP51G5

Scaff LG_III (+) 14476000-14477787

eugene3.00031308|Poptr1

gene model correct

83% to Arab. 51G1 95% to Scaff LG_I CYP51G1 seqF.

$

14476000 MTKDTDNKFLNVGLLILATLLVAKLISALIMPRSQKRLPPVMKGWPLIGG 14476149

14476150 LIRFLKGPIVMLREEYPKLGSVFTVNLANWKITFLIGPEVSAHFFKASEA 14476299

14476300 DLSQQEVYQFNVPTFGPGVVFDVDYSIRQEQFRFFTESLRVSKLKGYVDQ 14476449

14476450 MVVEAE 14476467 (0)

14476789 DYFSKWGDSGVVDIKYELEHLIILTASRCLLGREVRDKLFDDVSALFHD 14476935

14476936 LDNGMLPISVLFPYLPIPAHRRRDRARKKLAEIFANIINSRKLAGKSEND 14477085

14477086 MLQCFIDSKYKDGRPTTESEITGLLIAALFAGQHTSSITSTWTGAYLLRH 14477235

14477236 NEYLSAVLEEQKNLMKKHGNKVDQDILSEMGVLHRCIKEALRLHPPLIML 14477385

14477386 LRSSHSDFSVTTRDGKEYDIPKGHIVATSPAFANRLPHVFKDPERYDPDR 14477535

14477536 FAAGREEDKAAGAFSYISFGGGRHGCLGEPFAYLQIKAIWSHLLRNFEFE 14477685

14477686 LISPFPETDWNAMVVGVKDKVMVRYKRRELSVN* 14477787

 

>CYP71B41-de1

LG_VIII (-) 12482829-12482572

eugene3.00081725|Poptr1

N-term only

71B like 100% to LG_VIII.4 LG_VIII.10 LG_VIII.16

$

12482829 MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12482680

12482679 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSA 12482572

>CYP71B44P

LG_I (+) 19811612-19812590

fgenesh1_pg.C_LG_I001954 [Poptr1:64602]

model short exon 1

71B like pseudogene 51% to 71B36 53% to 71B41

$

19811612 MACHDPLIMWSLPLVLFFSLLMFLLIRKKQNKQQIPPTPPRLPIIGNLHQLGDLS 19811776

19811777 QRSLWQLSKKYGPVILLKLGAVPAVVISSAEAAKEVLKTNDLHACSRPLL 19811926

19811927 AGTGRLSYNYSDVSFTYTYGDYWRKM*KICVLELCSARRVQSFLF 19812061

19812135 IREEEVALLIDTISAYSFSATPVDLSEKILSFTANITCRAAFGK 19812266

19812267 SFQEIKGFDGKRFEEVIREASAILASFSAADFFPKDGWIIERLTG 19812401

19812402 LLHSRLERSFRELDVLYRRVIDDHIKLEE 19812485

19812486 EEKEDIVGGPLKL*RDQTEFGTIQLTHDHIKAKLM 19812590 (0)

>CYP71B40v1

LG_VIII.4 (-) 12489221-12487004

eugene3.00081726|Poptr1

gene model short at N-term

71B like 53% to 71B36 97% to LG_VIII.16

$

12489221 MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12489072

12489071 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDVAF 12488922

12488921 CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKILTLELFSLKRVQSFRF 12488772

12488771 IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS 12488622

12488621 FDRDKFHEVVHDTVAVVGSISADESIPYLGWIVDRLTGHRARTERVFHEV 12488472

12488471 DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKEQTELGASQFTKDNIKAILL 12488316 (0)

12487621 NLFMAGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12487472

12487471 DQLEYLRMVIKETLRLHPPGPLLIPRETMSHCKVSGHNIYPKMLVQINVW 12487322

12487321 AIGRDPRYWKDPEEFFPERFLDRSIDYKGQSFEYLPFGSGRRICPGMHMG 12487172

12487171 SITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12487022

12487021 VNYLP* 12487004

 

>CYP71B40v2

scaffold_994 (+) 9952-10569

fgenesh1_pg.C_scaffold_994000003|Poptr1

duplicate seq

CYP71B40 100% match exon 2

$

 9952 NLFMAGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 10101

10102 DQLEYLRMVIKETLRLHPPGPLLIPRETMSHCKVSGHNIYPKMLVQINVW 10251

10252 AIGRDPRYWKDPEEFFPERFLDRSIDYKGQSFEYLPFGSGRRICPGMHMG 10401

10402 SITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVPVNYLP* 10569

>CYP71B41

LG_VIII.16 (-) 12479032-12476806

eugene3.00081724|Poptr1

gene model short at N-term

71B like 54% to 71B36

$

12479032 MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12478883

12478882 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDLAF 12478733

12478732 CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKIVTLELFSLKRVQSFRF 12478583

12478582 IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS 12478433

12478432 FDRDKFHEVVHDTEAVAGSISADESIPYLGWIVDRLTGHRARTERVFHEL 12478283

12478282 DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKEQTELGASQFTKDNIKAILL 12478127 (0)

12477423 NLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12477274

12477273 DQLEYLRMVIKETLRLHPPAPLLIPRETMSHCKVSGHNIYPKMLVQINVW 12477124

12477123 AIGRDPTYWKDPEEFFPERFLDSSIDYKGQSFEYLPFGSGRRICPGMHMG 12476974

12476973 FITMEIILANLLYCFDWVYPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12476824

12476823 VNYLQ* 12476806

>CYP71B38

LG_VIII.10 (-) 12547429-12545187

fgenesh1_pg.C_LG_VIII001676|Poptr1

gene model short on the N-term

71B like 54% to 71B36 97% to LG_VIII.4

$

12547429 MALYVVPLWLPLILLLALLLLFMKKMEVKRQSEQLLPPSPPKLPILGNLH 12547280

12547279 QLGSLPHQSLWQLSKKYGPVMLIRLGRIPTVVISSAEAAREVLKVHDLAF 12547130

12547129 CSRPLLAGTGRLTYNYLDIAFSPYSDHWRNMRKVLTLELFSLKRVQSFRF 12546980

12546979 IREEEVSLLVNFISESSALAAPVDLTQKLYALVANITFRMAYGFNYRGTS 12546830

12546829 FDRDKFHEVVHDTEAVAGSISADESIPYLGWIVDRLTGHRARTERVFHEL 12546680

12546679 DTFFQHLIDNHLKPGRIKEHDDMVDVLLRIEKDQTELGASQFTKDNIKAILL 12546524 (0)

12545804 NLFLGGVDTISLTVNWAMAELVRNPRVMKKVQDEVRKCVGNKGRVTESDI 12545655

12545654 DQLEYLRMVIKETLRLHPPAPLLITRETMSHCKVSGHNIYPKMLVQINVW 12545505

12545504 AIGRDPTYWKDPEEFFPERFLDSSIDYKGQSFEYLPFGSGRRICPGMHMG 12545355

12545354 FITMEIILANLLYCFDWVFPDGMKKEDINMEEKAGVSLTTSKKTPLILVP 12545205

12545204 VNYLQ* 12545187

>CYP71B43P

LG_X.28 (-) 6738703-6736564

fgenesh1_pg.C_LG_X000579|Poptr1

gene model wrong 2 frameshifts

71B like 52% to 71B36 86% to LG_VIII.4

possible pseudogene or two seq. errors.

$

6738703 MALYAVPLWLPLILLLPLLLLFMKRMKDAGQSEQLLPPGPP 6738581

6738581 KLPILGNLHQLSSLPHQSMWHLSKKYGPVMLLRLGQIPTVVISSAEAA 6738438

6738437 REVLKVHDLAFCSRPLLSGAGRLTYNYLDIAFSPYSDHWRNMRKIVTLEL 6738288

6738287 FSLKRVQSFRFIREEEVGFLVNSLSESSALAAPVDLTQKVYALVANITFR 6738138

6738137 VAYGFDYRGTTFDRDRFHEVVHDTEAVVGSISADEYVPYLG 6738015

6738015 MIVDWLTGHRARMERVFHELDTFFQHVIDNHLKPGRIKDHDDMIDV 6737878

6737877 LLRIEKEQTELGASQFTSDNIKAVLL 6737800 (0)

6737179 NLFLGGVDTSSLTVNWAMAELVRNPRVMKKVQDEVRKCVGKKGRVTEGDV 6737030

6737029 DQLEYLRMVIKETLRLHPPAPLLLPRETMSHCIVSGYNIYPKTLVHVNVW 6736880

6736879 AIGRDPKYWRDPEEFFPE 6736826

6736827 RFLDSSCDFNGQSFEYLPFGSGRRICPGIHMGSITVEIILSNLLHCFDWI 6736678

6736677 LPHGMQKEDINMEEKAGVSLAPSKKTPVILVPVNYLQ* 6736564

>CYP71B42P

LG_VIII.30 (-) 12460686-12458958

eugene3.00081722|Poptr1

gene model short, frameshifts

71B like pseudogene 95% to LG_VIII.31 54% to 71B24

$

12460686 MAFYILPLALLLLLLFPLPLILKKKQQ 12460608

12460608 KLYVLELFSLK 12460576

12460577 RVQSFRFIREEVISLLMNSISQSSSPATPVNLTQMLYSVFASIVFGMALG 12460428

12460427 KSFQGSDFHNERCRKSIHEAE 12460365

12460365 GHNRMLITGYDARIERVFLELDTLFQQVIDDHLKAERKERKEDIINVLLKMERDQT 12460198

12460197 ESSAPQLTKYNIKAVIL 12460147 (0)

12459572 NIFLGGVDTGAITVIWATAEIARNPIIMKKAQEEIRSSVGQKGRATEERT 12459423

12459422 DELQYLKMVIKETLRLHPPAPLLLPRETMSRCQINGYDIYLKTLIQVNAW 12459273

12459272 AIGRDPEYWRDSEEFFPERFVDSPIDYKGQRFEFLPFGSGRRVCPGILMG 12459123

12459122 VTMVELALANLLHCFDWKLPNAV 12459054

12459053 AINMEEAAGLTISKKNPLFLVRINYPQQAQPD 12458958

>CYP71B39P

LG_VIII.31 (-) 12534486-12532739

eugene3.00081733|Poptr1

gene model short, frameshifts

71B like pseudogene 95% to LG_VIII.30 

$

12534486 LLLLLLFPLPLILKKKQQ 12534433

12534433 KLYVLELFSLK 12534401

12534402 RVQSFRFIREEVISLLMNSISQSSSPATPVNLTQMLYSVFASIVFRMALG 12534253

12534252 KSFQGSDFHNERCRKAIHEAE 12534190

12534190 GHNRMLITGYDARIERVFLELDTLFQQVIDDHLKAERKERKEDIINVLLKMERDQT 12534023

12534022 ESSAPQLTKYNIKAVIL 12533972 (0)

12533397 NIFLGGVDTGAITVIWATAEIARNPIIMKKAQEEIRSSVGQKGRATEERT 12533248

12533247 DELQYLKMVIKETLRLHPPAPLLLPRETMSRCQINGYDIYLKTLIQV 12533107

12533107 NAWAIGRDPEYWRDSEEFFPERFVDSPIDYKGQRFEFFPFGSGRRVCPGI 12532958

12532957 VMGVTMVELALINLLYCFDWKLPNAV 12532880

12532879 DINMEEAAGLTISKKMPLFLVPINYPQRAQPDKMSRTSLLSKHTCS* 12532739

>CYP71B45P

LG_X (-) 6735316-6733923

fgenesh1_pg.C_LG_X000578|Poptr1

71 like I-helix + C-term (pseudogene?)

71 like pseudogene 75% to CYP71B42P

downstream of fgenesh1_pg.C_LG_X000579

$

6735316 ILSLGRTPTLVVSSAEAARAVLKTHDLDCCCRPRLSGSGRLTYNHVYVAF 6735167

6735166 APYGDYW*EMRKLFVLEPFILKRVQSFRFITGEVARIMNSIPQSSS 6735029

6734867 PYAG*ILDKVTDHHARIERVLH 6734802

6734482 NIFLGGVHAGAITVIWALEELAWNPRTMKKAQDEIRNSVGKKGRLAEESI 6734333

6734332 DEL 6734324

6734322 TLVIKETLRWQ 6734290

6734288 PPAPLLLPRETMSHCKINGYHIYPKILIQINV*AIGSDPTYWNDS*EFF 6734142

6734141 PERFVDSSID*KGQHFEFLPFGSGRRGCPGILMGVTMVELALANLLYCLDW 6733989

6733988 KSAKAIDINMEEAAGLTISKKM 6733923

 

>CYP71D38-de2b

scaffold_710 (-) 1341-893

eugene3.07100001|Poptr1

gene model short

pseudogene 89% to 726B1 J-helix to end

$

1341 VIKNPRVLEKAQKEGRQVFND 1279

1276 LGTIPDETSLHDSKFLKLIIKETLRLHPPAPLMIPIECRKRYNVNGYDTHVKSKVLINAWAIGRDP 1079

1078 NYWNELERFYPERFINVSTDFKGIDFEFIPFGAGKRMCPGKL 953

 953 VKRIRDLKLIPV 918

 916 SYRSLVG* 893

>CYP71D38

scaffold_710 (-) 19864-18128

eugene3.07100003|Poptr1

no comment

726A like 50% to 726A1 euphorbia

$

19864 MLISLPVFLTILLVISILWTWTKFIKSNKSSSNPPPGPWKLPFIGNLHQL 19715

19714 VHPLPHHRMRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVMKTHEINFV 19565

19564 ERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVRSFKSI 19415

19414 REEEVSNFIASIYSKEGSPINLSRMIFSLENGITARTSIGNKCKNHEGFL 19265

19264 PIVEELAEALGGLNMIDIFPSSKFLYMVSRVRSRLERMHREADEILESII 19115

19114 SERRANSALASKMGKNEEDDLLGVLLNLQDHGNLEFQLTTSTIKAVIL 18971 (0)

18748 EMFSGGGDTSSTALEWAMSELIKNPRVMEKAQKEVRQVFNDLGTIPDETS 18599

18598 LHDLKFLKLIIKETLRLHPPVPLIPRECRKRCDVNGYDIHVKSKVLINAW 18449

18448 AIGRDPNCWNEPERFYPERFINVSTDFKGSDFEFIPFGAGKRMCPGMLFA 18299

18298 TANTEFPLAQMLYHFDWKPAGGLKPENLDMTESFGGAVKRKQDLKLIPIS 18149

18148 YRSLVG* 18128

>CYP71D38-de2c

scaffold_710 (-) 21263-20928

no model

no comment

pseudogene 79% to 726B1 C-term

$

21263 NDLGTILDETS 21231

21213 LKLITEETLRLHPSAPLIPREWRKRCQVNGYD 21118

21117 NIHVKSKVLINAWA 21076

21085 CMGMLFAIA 21059

21059 HHFDWKPIDGLKPENLDMTESLGGATKRKRDLKLIFISYRSLVG 20928

>CYP71D23P

LG_XV.1 (+) 7113294-7114921

fgenesh1_pg.C_LG_XV000688|Poptr1

gene model wrong 2 frameshifts and a stop codon

71D like possible pseudogene 46% to 71D10 57% to LG_VII.22

$

7113294 MEQHFPLFAIFLTFLLFIFMVLRMRKKSETNKYLTTNPPPGPWKLPLVGN 7113443

7113444 IHHVAGHQIHHRFTDLARKYGPVMQILLGEVRFVVISSRETAKEVMKTNE 7113593

7113594 NIIVDRPDGVIPRIVFYNGKAISFTPYGEYWKQLRKSCSSKLLSPQCVRS 7113743

7113744 LIRSTMEEEVSDFVTSISSKEGSPINLSKMLFTLTFGLISRVILGKKGKN 7113893

7113894 QALLSSIEEWKQGGAGFDVADIFPSFKLFHSLGWARSKFVRQHQEIGEML 7114043

7114044 ETVINERRASKIRTKTSEHEIEEDFLDVLVNMQHALR 7114154

7114156 NLEFTNDNIKAILL 7114197 (0)

7114292 EFFLAGSDSSSAVMEWAMSEMLKNPRHMKRAQKEVRVVFTKMGNDDETRL 7114441

7114442 HELKYLQLIIKETTRLHPPAPLILRACREACKINGHDIPDRSNVMINAWA 7114591

7114592 IGRDPTYWNEA* 7114627

7114628 KFNPERFLDSSIDYMGTNFEFIPFGAGKRKCPGMAFGLAIVEMALAKLLY 7114777

7114778 IFDWKLCDGVKNEDLNMKEDTALGSTVKRKHELYLIPIPYHPSSPAK* 7114921

>CYP71D41

LG_VII.22 (+) 5888964-5891028

fgenesh1_pg.C_LG_VII000682|Poptr1

gene model correct

71D like 50% to 71D4, 75% to LG_VII.12

$

5888964 MEFPILLASLLFIFAVLRLWKKSKGNGSTLALPPGPWKLPLIGNIHQLAG 5889113

5889114 SLPHHCLTDLAKKYGPVMQLQIGEVSTVVVSSGEAAKEVMKTHEINFVER 5889263

5889264 PCLLVANIMFYNRKNIGFAPYGDYWRQMRKVCTLELFSAKRVRSFRSVRE 5889413

5889414 EEVSNFIRNIYAKAGSPINLSKMMLDLSNGVIARTSIGKKSKNQEAFLPI 5889563

5889564 IEDVAEALAGLNIVDVFPSAKFLYMISKLRSRLERSHIEADEILENIINE 5889713

5889714 RRASKEERKTDQDNEVEVLLDVLLNLQNQGNLEFPLTTDSIKAIIV 5889851 (0)

5890402 EMFGAGSETTSTLLEWSMSEMLKNPRVMKKAQEEVRQVFSDSENV 5890536

5890537 DETGLQNLKFLKLIIKETLRLHPPISLIPRECSKTCEINGYVIQAKSKVI 5890686

5890687 INAWAIGRDSNDWTEAEKFYPERFQDSSIDYKGTNFEFIPFGAGKRMCPG 5890836

5890837 MLFGIGNAELLLARLLYHFDWKLSSGAALEDLDMNEAFGGTVKKKHYLNL 5890986

5890987 IPIPYGPCPLPVE* 5891028

 

>CYP71D42

LG_VII.3 (-) 5804810-5802796

eugene3.00070713|Poptr1

gene model seems correct

71D like 49% to 71D4 99% to LG_VII.27

note these two gene names were both assigned to the same sequence

$

5804810 MDQVFQFIYILIVPFLLLIFPVLRLWKKSQGNNSSTPPPPPGPWKLPLIGNLHQLL 5804643

5804642 GSLPHQVLRDMANKYGPVMQLQIGEVPTVIISSPEAAKEAIKTHEINFVD 5804493

5804492 RPCLLVAKVMFYNSKDIAFAPYGDYWRQMKKVCVLELLSAKRVKSFRSIR 5804343

5804342 EEEVSNFMRTIYSKAGSPINLSKMMFDLLNGITARASVGKKYKHQEAFLP 5804193

5804192 IIEQVIEAMGGTNIADVFPSSKLLYMISRFRSRLERSHQDADVILENIIY 5804043

5804042 EHRVRREVAKTDEESEAEDLLDVLLNLQNHGDLGFPLTTDSIKATIL 5803902 (0)

5803416 ELFTAGSDSSSTLMEWTMSEMLRNPRVMRKAQEEVRQVFSNTEDVDETCL 5803267

5803266 HNLEFLKLIIKETLRLHPPAPFIPRECNKTCEINGYVIQAKSKVMINAWA 5803117

5803116 IGRDSDHWTEAEKFYPERFLDSSIDYMGTNFEFIPFGAGKRMCPGILFGI 5802967

5802966 ATVELPLAQLLYHFDWKLPNGDLSEDLDMNEVFVGTVRRKHQLNVIPIPF 5802817

5802816 YPSPLQ* 5802796

 

>CYP71D43

LG_VII.12 (-) 5753477-5751477

estExt_fgenesh1_pg_v1.C_LG_VII0660|Poptr1

gene model seems correct

71D like 48% to 71D4 94% to LG_VII.3

$

5753477 MEQVFQFIQILVPFLLLIFTVLRLWKKSQGNNSSTPPPP 5753361

5753360 PPPPPGPWKLPLIGNLHQLLGSLPHQVLRDMANKYGPVMQLQIGEVPTVI 5753211

5753210 ISSPEAAKEAMKTQEINFVDRPCLLVAKVMYYNSKDIGFAPYGDYWRQMK 5753061

5753060 KVCVLELLSAKRVKSFRSIREEEVSNFIRAIYSRAGSPINLSKMMFDLLN 5752911

5752910 GITARASVGKKYKHQEAFLPIIEQVIEAVGGTNIADVFPSSKLLYMISRF 5752761

5752760 RSRLERSHQDADVILENIIYEHRVRREVAKTDEESEAEDLLDVLLNLQNH 5752611

5752610 GDLGFPLTTDSIKATIL 5752560 (0)

5752097 ELFAGGSDTSSTLMEWTMSEMFRNPRVMRKAQEEVRQVFSNTENVDETCL 5751948

5751947 HNLEFLKLIIKETLRLHPPVPFIPRECNKTCEINGYVIQAKSRVMINAWA 5751798

5751797 IGRDSDHWTEAEKFYPERFLDSSIDYKGTNFDFIPFGAGKRMCPGILFGI 5751648

5751647 ATVELPLAQLLYHFDWKLPNGDLLEDLDMNEVFGGTVRRKHQLNLIPIPF 5751498

5751497 YPSPLQ* 5751477

>CYP71D24P

scaffold_228 (-) 35436-34671

eugene3.02280006|Poptr1

no comment

71D like 2 copies exon 1 pseudogene

$

35436 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQLASSATMP 35266

        35266 HYLCAHWARKYG 35231

                               35234 RTPPLGPWKLPLIGNIHQLASSATMP 35157

35180 LASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVIISSPDAAKEVLKT 35040

35039 QEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRKACIWGLFSATRK 34890

34889 LSFRSIREEEVSNLISSIRSKEGSPINLRELLLDLSNETITRTSIGKKCK 34740

34739 NKARFLHTIEQVSKSVGGVNIFL 34671

>CYP71D25Pv1

scaffold_228 (-) 39559-38903

eugene3.02280007|Poptr1

no comment

71D like 62% to LG_VII.22 41% to 71D4

exon 1 pseudogene

100% to scaffold_228  (-)    34668-35436

$

39559 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQ 39413

39412 LASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVIISSPDAAKEVLKT 39272

39271 QEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRKACIWGLFSATRK 39122

39121 LSFRSIREEEVSNLISSIRSKEGSPINLRELLLDLSNETITRTSIGKKCK 38972

38971 NKARFLHTIEQVSKSVGGVNIFL 38903

>CYP71D25Pv2

scaffold_1911 (+) 7175-8184

fgenesh1_pg.C_scaffold_1911000001|Poptr1

contains a duplication from exon 1 identical in seq to each other in overlap region

71V like 37% to 71V5

almost identical to 71D25P  2 aa diffs probable duplicate sequence

$

7175 MQQEIPLVLGFLLLVFAVLRLGKKSKGHDSTRTPPPGPWKLPLIGNIHQLASSATMPHYLCAHWAKKYG 7381

7381 TPPPGPWKLPLIGNIHQLASSATMPHYLCAHWAKKYGPIMQIQIGEVPTVII 7536

7537 SSPDAAKEVLKTQEINFAERPALLVSEIMLYNGQGMSFAKFGDHWKLMRK 7686

7687 ACIWGLFSATRKLSFRSIREEEVSNLISSIRSKAGSPINLRELLLDLSNE 7836

7837 IITRTSIGKKCKNKARFLHTIEQVSKSVGGVNIVDLFPSARLVHMISNMT 7986

7987 SSLQRLHEETDQMLEDIINERRASRVEKKTGENKIEAGDDLLDVLLNLQD 8136

8137 DGNFKVKTDSIKSIIL 8184 (0)

>CYP71D36Pv1

LG_I (-) 29491328-29490406

eugene3.00012614|Poptr1

no comment

mid regioN to EXXR 71D like

71D like EXXR 61% TO CYP71D26

$

29491328 DTVDVLLNL*GQADLEFTLTTKNIKAIIL 29491242 (0)

29490942 DMFVAGSETSSRTVEWAK 29490889

29490889 TELAKHPKVMEKAQAEARQVFANVDEAGLHKLDHLQLLIKETL 29490761

29490759 NIPPIPLLFPRESKEACKITGYDMPAQSKVTVNIWGIGREPINWTEPERFYP 29490604

29490603 ERFLDSSMDYKGIDFKFIPFGAG 29490535

29490534 ILFGMATYVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS* 29490406

>CYP71D36Pv2

scaffold_1517 (-) 9207-8703

eugene3.15170002|Poptr1

gene model wrong

3 aa diffs to 71D36P, duplicate seq.

$

9207 LNEMAKHPKVMEKAQAKARQVFANVDEAGLHKLDHLQLLIKETL  9076

9074 NIPPIPLLFPRESKKACKITGYDMPAQSKVTVNIWGIGREPINWTEPERFYP 8919

8918 ERFLDSSMDYKGIDFKFIPFGA 8853

8852 GILFGMATVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS*DEK*SLH 8703

>CYP71D35Pv1

LG_I (-) 29497891-29497622

no model exists

no comment

71B like pseudogene

98% to scaffold 1517, 93% to scaffold 6967, 47% to 71B18

$

29497891 KVTVNIWRIGREPINWTEPER 29497829

29497826 FYPERFLDSSMDYKGIDFKFIPFGAGILFGMAT 29497728

29497726 TVVLPLAQLLCFLDWIPPNGLRSADLVTSQVFGSS 29497622

>CYP71D36Pv3

scaffold_6967 (-) 2023-1561

eugene3.69670001|Poptr1

gene model wrong

100% to 71D36Pv2

$

2023 LNEMAKHPKVMEKAQAKARQVFANVDEAGLHKLDHLQLLIKETL 1892

1890 NIPPIPLLFPRESKKACKITGYDMPAQSKVTVNIWGIGREPINW 1759

1758 TEPERFYPERFLDSSMDYKGIDFKFIPFGAGILFGMATVVLPLAQLLCFL 1609

1608 DWIPPNGLRSADLVTS 1561

>CYP71D34

LG_I.29 (-) 29516258-29514652

eugene3.00012615|Poptr1

gene model short one frameshift

71D like 52% to 71D10 93% to LG_I.2

$

29516258 MEQLQTPPSLVLLPSLLFIFMVLRMLKKSKSKDLTPNLPPGPRKLPVIGN 29516109

29516108 LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMKVHD 29515959

29515958 INFAHRPHLPVGQIIFYNCTDIATA 29515884

29515882 AAYGDYWRQLRKVSILELLSPKRVQSFRSIREEEVSSLIGSISSSAGSII 29515733

29515732 NLSRMLFSVAYNITTRAAFSKLRKEEEIFVPLVQGIIQVGAGFNISDLFP 29515583

29515582 SIKLIPWITGMRSRMERLHQEADRILESIINDHRARKAEGNSSNESKADN 29515433

29515432 LVDVLLDLQEHGNLDFSLTTDNIKAVIL 29515349 (0)

29515263 DIFIAGTETSSTILQWAMSELLKHPEVMEKAQTEVREAFGKDGSVGELNY 29515114

29515113 LKMVIKETMRLHPPLPLLLPRECREECGINGYNIPIKSRVLVNVWAIGRD 29514964

29514963 SDYWVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRR 29514853

29514852 MCPGILFGISNVDLLLANLLYHFDWKLPGDMEPESLDMSEAFGATVRR 29514709

29514708 KNALHLTPILHHPHPVRS* 29514652

>CYP71D44

scaffold_11610 (-) 1395-784

eugene3.116100001|Poptr1

gene model wrong exon 2 only

71D LIKE 96% to 71D34

$

1395 DLFIAGTETSSTILEWAMSELLKHPEVMEKAQTEVREVFGKDGSVGELNY 1246

1245 LKMVIRETMRLHPPLPLLLPRECREECGINGYNIPIKSRVLVNVWAIGRD 1096

1095 SNYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRRMCPGILFGISNVD 946

 945 LLLANLLYHFDWKLPGDMKLESLDMSEAFGATVRRKNALHLTPILHQPHPVRS* 784

>CYP71D33P

LG_I (-) 29524379-29524047

eugene3.00012616 [Poptr1:550175]

model short

71B like pseudogene

$

29524379 VWAIGRDSDYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRR 29524248

29524247 MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29524104

29524103 KNALHLTPILHHPHPVRS* 29524047

>CYP71D32P

LG_I (-) 29530020-29529344

eugene3.00012617 [Poptr1:550176]

no comment

71B like pseudogene

$

29530020 MEQPQIPSCLVLLPSLLFIFMVLRMLKKSKTKDLTPNLPPGPRKLPVIGN 29529871

29529870 LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMK 29529730

29529676 VWAIGRDSNYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRR 29529545

29529544 MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29529401

29529400 KKALHLTPILHHPHPVRS* 29529344

>CYP71D31P

LG_I (-) 29532948-29532496

eugene3.00012618|Poptr1

no comment

71B like pseudogene C-term

$

29532948 VIRETMRLHPPLPLLLPRECREECGINGYNIXIKSRVLVNAWAIGRDSNY 29532799

29532798 WVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRR 29532697

29532696 MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGAAVRR 29532553

29532552 KNALHLTPILHHPHPVRS* 29532496

>CYP71D30P

LG_I (-) 29540735-29539563

eugene3.00012620 [Poptr1:550179] gene start

eugene3.00012619 [Poptr1:550178] gene end

71B like PSEUDOGENE 2 models are from same gene

$

29540735 MEQLQIPTSLVLLSSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGN 29540586

29540585 LHQLFCSLPHHRLR 29540544

29539973 LLPRECREECGINGYNIPIKSRVLVNVWAIGRDSNYWVEAERFQPERFLD 29539824

29539823 SSIDYKGVNFEFTPFGAGRR 29539764

29539763 MCPGILFGISNVDLLLANLLYHFDWKLPGDMKPESLDMSEAFGATVRR 29539620

29539619 KNALHLTPILHHPHPVRS* 29539563

>CYP71D29

LG_I.6 (-) 29575643-29574039

eugene3.00012625 [Poptr1:550184]

gene model wrong gene has one frameshift

71D like 54% to 71D11 93% to LG_I.29

$

29575643 MEQLQIPTSLVLLSSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGN 29575494

29575493 LHQLFGSLPHHRLRDWP 29575443

29575443 EKHGPIMHLQLGQVQTIVISSPETAEQVMKVHDINFAHR 29575327

29575326 PHLLAAQIIFYNCTDIATAAYGDYWRQLRKISILELLSPKRVQSFRSIR 29575180

29575179 EEEVSSLIGSISSSAGSIVNLSRMLFSVAYNITTRAAFSKLRKEEEIFVP 29575030

29575029 LVQGIIQVGAGFNVGDLFPSIKLLPWISGMRSRMERLHQEADRILESIIK 29574880

29574879 EHRARKAEGNSSNESKADDLVDVLLDLQEHGNLDFSLTTDNIKAVIL 29574739 (0)

29574653 DLFIAGTETSSTILEWAMSELLKHPEVMEKAQTEVREVFGKDGSVGELNY 29574504

29574503 LKMVIRETMRLHPPLPLLIPRECREECGINGYNIPIKSRVLVNVWAIGRD 29574354

29574353 SNYWVEAERFQPERFLDSSIDYKGVNFEFTPFGAGRRRMCPGIMFGISNV 29574204

29574203 DLLLANLLYHFDWKLPGDMKPESLDMSEAFGAAVRRKNALHLTPILHHPH 29574054

29574053 PVRS* 29574039

>CYP71D29

scaffold_1813 (+) 7926-8444

grail3.1813000101|Poptr1

most of exon 2

71D29 100% match duplicate seq.

$

7926 LKHPEVMEKAQTEVREVFGKDGSVGELNYLKMVIRETMRLHPPLPLLIPR 8075

8076 ECREECGINGYNIPIKSRVLVNVWAIGRDSNYWVEAERFQPERFLDSSID 8225

8226 YKGVNFEFTPFGAGRRRMCPGIMFGISNVDLLLANLLYHFDWKLPGDMKP 8375

8376 ESLDMSEAFGAAVRRKNALHLTP 8444

>CYP71D29-se3[1]

scaffold_1517 (-) 4845-4513

eugene3.15170001|Poptr1

no comment

97% to 71D29 100% to scaffold_19234

$

4845 MEQLQIPTSLVLLPSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGN 4696

4695 LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMKVHD 4546

4545 INFAHRPHLLV 4513

>CYP71D29-se1[1]

scaffold_19234 (-) 368-1

no gene model

no comment

95% to 71D29 N-term no gene model at JGI

$

368 MEQLQIPTSLVLLPSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGNLHQLFG 201

200 SLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMKVHDINFAHRPHLLVGQIIFYNCTDI 3

>CYP71D29-se2[1]

scaffold_18933 (+) 920-1111

no gene model

no comment

71B like N-term no gene model at JGI

may be same gene as scaffold_19234 1 aa diff to 71D29

$

 920 MEQLQIPTSLVLLPSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGNLHQLFG 1087

1088 SLPHHRLR 1111

>CYP71D46P

scaffold_724  (+)    13518-14366

eugene3.07240004|Poptr1

missing end of exon 1 and all of exon 2

CYP71D46P 97% to 71D29 exon 1

$

13518 MEQLQIPTSLVLLSSLLFIFMVLRILKKSKTKDFTPNLPPGPRKLPVIGN 13667

13668 LHQLFGSLPHHRLRDLAEKHGPIMHLQLGQVQTIVISSPETAEQVMKVHD 13817

13818 INFAHRPHLLVGQIIFYNCTDIATAAYGDYWRQLRKISIVELLSPKRVQS 13967

13968 FRSIREEEVSSLIGSISSSAGSIINLSRMLFSVAYNITTRAAFSKLRKEE 14117

14118 EIFVPLVQGIIQVGAGFNIGDLFPSIKLLPWITGMRSRMERLHQEADRIL 14267

14268 ESIIKEHRARKAEGNSSNESKADDLVDVLL 14357

>CYP71D45P

scaffold_724 (+) 1454-2065

eugene3.07240001|Poptr1

C-term

2 aa diffs to 71D31P 95% to 71D29 exon 2

note exon 2 precedes exon 1 on scaf_724, could be a nearly intact gene if rearranged

$

1454 DLFIAGTETSSTILEWAMSELLKYPEVMEKAQTEVREVFGKNGSVGELNY 1603

1604 LNMVIRETMRLHPPLHLLLPRECREECGINGYNIPIKSRVLVNAWAIGRD 1753

1754 SNYWVEAERFHPERFLDSSIDYKGVNFEFTPFGAGRRMCPGILFGISNVD 1903

1904 LLLANLLYHFDWKLPGDMKPESLDMSEAFGAAVRRKNALHLTPILHHPHPVTS* 2065

>CYP71D28v1

LG_I.2 (-) 29606262-29604787

eugene3.00012629|Poptr1

gene model short with one frameshift

71D like 55% to 71D11 93% to LG_I.29

$

29606262 MEQLQIPSSLVLLPSLLFIFMVLRMLKKSKTKDLTPNLPPGPRKLPVIGN 29606113

29606112 LHQLFGSLPHHRLRDWP 29606062

29606062 EKQGPIMHLQLGQVQTIVISSPETAEQVIKVHDINFAHR 29605946

29605945 PHVLAAQIIFYNCTDIATAAYGDYWRQLQKISILELLSPKRVQSFRSIR 29605799

29605798 EEEVSSLIGSISSSAGSIVNLSRMLFSVAYNITTRAAFSKLRKEEEIFVP 29605649

29605648 LVQGIMQVGAGFNISDLFPSIKLLPWITGMRSRMERLHQEADRILESIIK 29605499

29605498 EHRARKAEGNSSNESKVDDLVDVLLDLQEHGNLDFSLTTDNIKAVIL 29605358 (0)

29605272 DLFIAGTETSSTILEWAMSELLKHPEVMEKAQTEVREVFGKDGSVGELNY 29605123

29605122 LKMVIRETMRLHPPLPLLFPRECREECGINGYNIPIKSRVLVNVWAIGRD 29604973

29604972 SNYWVEAERFHPERFLDSAIDYKGVNFEFTPFGAGRR 29604862

29604861 MCPGILFGISNVDLLLANLLYHFDW 29604787

>CYP71D28v2

scaffold_2240 (-) 487-3

fgenesh1_pg.C_scaffold_2240000001|Poptr1

no comment

CYP71D28v2 1 aa diff to 71D28, duplicate seq.

$

487 MEQLQIPSSLVLLPSLLFIFMVLRMLKKSKTKDLTPNLPPGPRKLPVIGN 338

337 LHQLFGSLPHHRLRDWP 287

287 EKQGPIMHLQLGQVQTIVISSPETAEQVIKVHDINFAHRPHVLAAQIIFY 138

137 NCTDIATAAYGDYWRQLQKISILELLSAKRVQSFRSIREEEVSSL 3

>CYP71D26

scaffold_228.17 (-) 105939-104306

fgenesh1_pg.C_scaffold_228000012|Poptr1

gene model wrong at N-term

71D like 54% to 71D4 60% to LG_I.29

$

105939 MEHQFASTILVTILVTSISYVILWIWKKSKV 105847

105846 RNSNLNLPPVPSQLPLIGNMHNLVGSLPHHRFRDMAKKYGPVMHLRLGEV 105697

105696 THVLISSAETAKEVMKTHDLIFAQRPAPIAAKILSYNCMDIAFAPYGDYW 105547

105546 RMLRKLCVLELLSAKRVRSFRSIREEEVWRVVRSISSSAWSPVNFSRMIS 105397

105396 SLTYCITSRAAFGKICKGEDVFIPAVKEANKAAGGYSLADLYPSIKLLSV 105247

105246 ISGMRLTLEKIHARLDKILQEIINEHRSKKEMAAKTGADEEEHDLVDVLL 105097

105096 GIQDQGDTEFSLTDNNIKAIIL 105031 (0)

104929 DLFVAGTDTSSTTVVWAMSEMVKHPRVMKKAQEEVRQVFGDKGTVDE 104789

104788 AGLHELNYLKLAIKETFRLHPPVPLLLPRESREDCKINGYDIPIKSKVIV 104639

104638 NVSAIGRDPTYWNEPERFYPERFLDNSIEYKGTDFELLPFGAGRKMCPGI 104489

104488 LFGTVNVELPLAQLLFHFDWNLPKGPKPEDLDMSEVFGAVVTRKNDLCLI 104339

104338 PIPHHPLPGN* 104306

>CYP71D27

LG_VIII.13 (+) 5139033-5140582

fgenesh1_pg.C_LG_VIII000713|Poptr1

gene model short, missing N-term

71D like 51% to 71D4 59% to LG_I.29

$

5139033 SDEEAAKEVMKTHDVTFAQRPYFLVSDIISYNSTNIAFSPFGDYWRQVRK 5139182

5139183 ICILELLRAKRVQSFQAIREEEVSNLISSINYNAGLPINLTKLLYTISFD 5139332

5139333 STSRASFGKKSKDHEAFKSVMEEIMEVSKSFIISDIFLSIKLLHLISGTR 5139482

5139483 QKLKILHQKADQILESIINEDRAREAPSNEIEADDLVHVLLNLLGHGKLE 5139632

5139633 FPLTTDNIKSVNL 5139671 (0)

5139985 DMFLGGTETSSTVLDWAIAGLLRNPRVMKKAQAEVRQVFCTAGNVDETDL 5140134

5140135 EKLKYLELVVKETLRLHPPLSLLLPRESREDCEINGFKIPAKIKVVINVW 5140284

5140285 AIGRDPAYWNEPEK 5140326

5140328 FHPERFHDSLIDYNGANFEYIPFGAGRRMCPGISFGIANVEYPLAHLL 5140471

5140472 YHFNWKLPNGLKPENLDMTEVFGVAVRRSALDSHFV* 5140582

>CYP71D22

scaffold_122.5 (+) 199976-202441

eugene3.01220022|Poptr1

gene model seems correct

71D like 45% to 71D10 54% to LG_XI.14

$

199976 MEWQLPSFSALSTFLLFMTFLLLKIFKEPKTNHNSGRNPPPGPKALRIIG 200125

200126 NLHQLGGGPSLLIRLRELAERYGPIMLLQVGEVPTIIISSPELAQEVMKT 200275

200276 HESCFDERPPFFAGNVYFYGNRDLIFAPYGDYWKQLRKIVTMEVLSPIRV 200425

200426 RTFRATREEEVASLIRTISSQQGSAINLSQILFSFTYSIISRISVGRNSK 200575

200576 NQKEFATIVKDFSTISKELSLAAGGANVVDLYPSQKLLHMFSWRKFRLGR 200725

200726 EHKKANKILERLIKERKASKRDKEIAENEVEDLLDVLLNLQLTVGLDSPL 200875

200876 TDECVKALLL 200905 (0)

201818 DMFAGGGDTTLTVLEWAMSELMKNPRVREKAQKEVRALFNDVGYIDESNV 201967

201968 HELQFLNLTLKETLRLHPPLCVYPRECKVNCKVAGYDLEAKTRVLINAWM 202117

202118 IGRDPKYWTEPEKFYPERFLDCSTDYKGANFEFLPFGSGKRICPGMAFGI 202267

202268 ATVELPLARLLLHFDWKIPNGIKPEDFDMSEIVSASVTRKNDIVLIPVTC 202417

202418 YDPPVKG* 202441

>CYP71D22P dup.

scaffold_122 (+) 221737-222360

fgenesh1_pg.C_scaffold_122000024|Poptr1

duplication, probable error in assembly

71B like 100% match to scaffold_122.5 exon 2

$

221737 DMFAGGGDTTLTVLEWAMSELMKNPRVREKAQKEVRALFNDVGYIDESNV 221886

221887 HELQFLNLTLKETLRLHPPLCVYPRECKVNCKVAGYDLEAKTRVLINAWM 222036

222037 IGRDPKYWTEPEKFYPERFLDCSTDYKGANFEFLPFGSGKRICPGMAFGI 222186

222187 ATVELPLARLLLHFDWKIPNGIKPEDFDMSEIVSASVTRKNDIVLIPVTC 222336

222337 YDPPVKG* 222360

>CYP71D37P

LG_XI (+) 12873790-12874128

eugene3.00111064|Poptr1

no comment

71B like PSEUDOGENE EXXR 86% TO LG_XI.14

$

12873790 NDLGTILDETSRRN 12873831

12873831 LLKLKLITEETLRLHPSAPLIPREWRKRCQVNGYDNIHVKSKVLINAWA 12873977

(deletion)

12873977 MLFAIA 12873994 (deletion)

12873994 HHFDWKPIDGLKPENLDMTESLGGATKRKRDLKLIFISYRSLVG* 12874128

>CYP71D38

LG_XI.8 (+) 12875195-12876930

fgenesh1_pg.C_LG_XI001081|Poptr1

gene model seems correct

71D like 52% to 71D9

93% to LG_XI.14  54% to scaffold_122.5

$

12875195 MLISLPVFLTILLVISILWTWTKFIKSNKSSSNPPPGPWKLPFIGNLHQL 12875344

12875345 VHPLPHHRMRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVMKTHEINFV 12875494

12875495 ERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVRSFKSI 12875644

12875645 REEEVSNFIASIYSKEGSPINLSRMIFSLENGITARTSIGNKCKNHEGFL 12875794

12875795 PIVEELAEALGGLNMIDMFPSSKFLYMVSRFRSRLERMHREADEILESII 12875944

12875945 SERRANSALASKMGKNEEDDLLGVLLNLQDHGNLEFQLTTSTIKAVIL 12876088 (0)

12876310 EMFSGGGDTSSTALEWAMSELIKNPRVMEKAQKEVRQVFNDLGTIPDETS 12876459

12876460 LHDLKFLKLIIKETLRLHPPVPLIPRECRKRCDVNGYDIHVKSKVLINAW 12876609

12876610 AIGRDPNCWNEPERFYPERFINVSTDFKGSDFEFIPFGAGKRMCPGMLFA 12876759

12876760 TANTEFPLAQMLYHFDWKPAGGLKPENLDMTESFGGAVKRKQDLKLIPIS 12876909

12876910 YRSLVG* 12876930

>CYP71D46P

LG_VI (+) 6134143-6134717

eugene3.00060769|Poptr1

no comment

71D like 52% to 71D38 exon 2

$

6134143 HMFLAGSDTT*FFEWALLEMIRNPRVMTRAQKEVREVGN 6134259

6134264 DESGLREVKYVKLIIKETLRLLPPVALLPRECRQSCKTQGYDIHEK 6134401

6134400 KNKAMINVWAMGRDPGYWIEPEKFYPE 6134480

6134480 RFLTCISDYISTDFEFLPFGA*RRMCPGLLLGKTTGRVATSHLLYHFD*ELPN 6134638

6134637 MDMTEAFSSVIGRKHDLIVIPIPFNS* 6134717

>CYP71D39

LG_XI.14 (+) 12884309-12886030

eugene3.00111066|Poptr1

gene model short

71D like 51% to 71D9 93% to LG_XI.8 54% to scaffold_122.5

$

12884309 MLLSLPVFLTILLVISILWTWTKLIKSNKSSSNPPPGPWKLPFIGNLHQL 12884458

12884459 VHPLPHHRLRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVV 12884584

12884584 KTHEINFVERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKIS 12884709

12884710 ILELLSAKRVRSFKSIREEEVSNLITSIYSKEGSPINLSRMIFSLENGIT 12884859

12884860 ARTSIGNKCKNQEAFLPIVDELTEAL 12884937

12884938 GGFNMIDIFPSSKFIYMVSRVRSRLERMHREADEILESIISERRANSALA 12885087

12885088 SKMDKNEEDDLLGVLLNLQDHGNLEFQLTTSAIKAIIL 12885201 (0)

12885413 MFSGGGDTSSTALEWAMSELVKNPRVMEKAQKEVRQVFNDIGTIPDEASL 12885562

12885563 HDLKFLKLIIKETLRLHPSGPLIPRECRKRCNVNGYDIHVKSKVLINAWA 12885712

12885713 IGRDPNYWNEPERFYPDRFINVSTDFKGSDFEFIPFGAGKRMCPGMLFAI 12885862

12885863 ANIEFPLAQMLYHFDWKPADGLKPEDLDMTESLGGTVKRKRDLKLIPISYRSLVG* 12886030

>CYP71D40P

LG_XI.18 (+) 12892840-12894465

eugene3.00111067|Poptr1

gene model short may = scaf_4500 on the end

71D like pseudogene 48% to 71D4 95% to 71D39

$

12892840 MLLSLPVFLTILLVISILWTWTKLIKSNKSSSNPPPGPWKLPFIGNLHQL 12892989

12892990 VHPLPHHRLRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEV 12893112

12893112 DVNFVERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVR 12893261

12893262 SFKSIREEEVSNLITSIHSQEGSPINLSRMIFSLENGITARTSIGNKCKN 12893411

12893412 QEAFLPIVDELTEAL 12893456

12893458 VTGGFNMIDIFPSSKFIYMVSRVRSRLERMHREADEILESIISERRANSA 12893607

12893608 LASKMDKNEEDDLLGVLLNLQDHGNLEFQLTTSAIKAIIL 12893727 (0)

12893963 EMFSGGGDTSSTALEWAMSELIKNPRVMEKAQKEVRQVFNDLGTIPDETS 12894112

12894113 LHDLKFLKLIIKETLRLHPPVPLIPRECRKRYNVNGYDTHVKSKVLINAW 12894262

12894263 AIGRDPNYWNELERFYPERFINVSTDFKGIDFEFIPFGAGKRMCPGKL 12894406

(deletion)

12894406 VKRKRDLKLIPISYRSLVG* 12894465

 

>CYP71D40P

scaffold_4500 (-) 3903-3733

no model

no comment

100% match to 71D40P

$

3903 VLINAWAIGRDPNYWNELERFYPERFINVSTDFKGIDFEFIPFGAGKRMCPGKLFAM 3733

 

>CYP71AN1

LG_XVI.15 (+) 13154281-13155936 

eugene3.00161321|Poptr1

gene model short at N-term one stop codon

71B like 46% to 71AH1 98% to CYP71AN2

96% to LG_XVI.24

$

13154281 MT*LLYFQQTWQEIRPKIGLNYLVFFLIFLSFILFLFKLTRSRKLNLP 13154424

13154425 PSPPKLPVIGNIHHLGTLPHRSLQALSEKYGPLMLLHMGHVPTLIVSSAE 13154574

13154575 AASEIMKTHDIVFANRPQTTAASIFFHGCVDVGFAPFGEYWRKVRKISVQ 13154724

13154725 ELLGPKTVQSFHHVREEEAAGLIDKIRFACHSGTSVNISEMLISVSSDIV 13154874

13154875 SRCVLGRKADKEGGNSKFGELTRTFMVQLTAFSFGDLFPYLGWMDTLTGL 13155024

13155025 IPRLKATSRALDSFLDQVIEEHRSLESDGDRCAQTDFLQALLQLQKNGKL 13155174

13155175 DVQLTRDNIIAVVL 13155216 (0)

13155325 DMFVGGTDTSSTMMEWAIAELVRNQTIMRKAQEEVRRIVGKKSKVEANDI 13155474

13155475 EEMGYLKCIIKETLRLHPAAPLLVPRETSASFELGGYYIPPKTRVLVNAF 13155624

13155625 AIQRDPSFWDRPDEFLPERFENNPVDFKGQDFQFIPFGSGRRGCPGALFG 13155774

13155775 VTAVEFMIANLLYWFDWRLPDGATQEELDMSEICGMTAYKKTPLLLVPSL 13155924

13155925 YSP* 13155936

>CYP71AN2v1

LG_XVI.26 (+) 13161865-13163520

eugene3.00161323|Poptr1

gene model short at N-term

71A like 44% to 71A12 97% to CYP71AN3

45% to 71AH1

$

13161865 MTELLYFQQTWQEIRPKIGLNYFVFFLIFLSFILFLFKLTTSRKLNLP 13162008

13162009 PSPPKLPVIGNIHHFGTLPHRSLQALSEKYGPLMLLHMGHVPTLIVSSAE 13162158

13162159 AASEIMKTHDIVFANRPQTTAASIFFHGCVDVGFAPFGEYWRKVKKISVQ 13162308

13162309 ELLGPKTVQSFHHVREEEAAGLIDKIRFACHSGTSVNISEMLISVSSDIV 13162458

13162459 SRCVLGRKADKEGGNSKFGELTRTVMVQLTAFSFGDLFPYLGWMDTLTGL 13162608

13162609 IPRLKATSRALDSFLDQVIEEHRSLESDGDRCAQTDFLQALLQLQKNGKL 13162758

13162759 DVQLTRDNIIAVVL 13162800 (0)

13162909 DMFVGGTDTSSTMMEWAIAELVRNQTIMRKAQEEVRRIVGKKSKVEANDI 13163058

13163059 EEMGYLKCIIKETLRLHPAAPLLVPRETSASFELGGYYIPPKTRVLVNAF 13163208

13163209 AIQRDPSFWDRPDEFLPERFENNPVDFKGQDFQFIPFGSGRRGCPGALFG 13163358

13163359 VTAVEFMIANLLYWFDWRLPDGATQEELDMSEICGMTAYKKTPLLLVPSL 13163508

13163509 YSP* 13163520

>CYP71AN2v2

scaffold_1240 (-) 6280-5579

eugene3.12400001|Poptr1

no comment

71AN like 98% to 71AN2, 3 aa diffs duplicate seq.

$

6280 MT*LLYFQQTWQEIRPKIGLNYLVFFLIFLSFILFLFKLTRSRKLNLPPS 6131

6130 PPKLPVIGNIHHFGTLPHRSLQALSEKYGPLMLLRMGHVPTLIVSSAEAA 5981

5980 SEIMKTHDIVFANRPQTTAASIFFHGCVDVGFAPFGEYWRKVKKISVQEL 5831

5830 LGPKTVQSFHHVREEEAAGLIDKIRFACHSGTSVNISEMLISVSSDIVSR 5681

5680 CVLGRKADKEGGNSKFGELTRTFMVQLTAFSFGD 5579

>CYP71AN3

LG_XVI.24 (+) 13169467-13171129

eugene3.00161324|Poptr1

gene model short at N-term

71A like 44% to 71A12

97% to CYP71AN2, 45% to 71AH1

$

13169467 MTELLYFQQTWQEIRPKIGLNYFVFFLIFLSFILFLFKLTTSRKLNLP 13169620

13169621 PSPPKLPVIGNIHHFGTLPHRSLQALSEKYGPLMLLHMGHVPTLIVSSAE 13169770

13169771 AASEIMKTHDIVFANRPQTTAASIFFHGCVDVGFAPFGEYWRKVRKISVQ 13169920

13169921 ELLGPKTVQSFHYVREEEAAGLIDKIRFACHSGTSVNLSEMLISVSNDIV 13170070

13170071 SRCVVGRKADKEGGNSKFGELTRTVMVQLTAFSFGDLFPYLGWMDTLTGL 13170220

13170221 IPRLKATSRTLDSLLDQVIEEHRSLESDGDRCAQTDFLLALLQLQKNGKL 13170370

13170371 DVQLTRDNIIAVVL 13170412 (0)

13170518 DMFVGGTDTSSTMMEWAIAELVRNQTIMRKAQEEVRRIVGKKSKVEANDI 13170667

13170668 EEMGYLKCIIKETLRLHPPAPLLVPRETSASVELGGYFIPPKTRVIVNAF 13170817

13170818 AIQRDPSFWDRPDEFLPERFENNPVDFKGQDFQFIPFGSGRRGCPGALFG 13170967

13170968 VTAVEFMIANLLYWFDWRLPDGATQEELDMSEICGMTAYKKTPLLLVPSL 13171117

13171118 YSP* 13171129

>CYP71AN4

LG_XII.23 (-) 10752455-10550851

fgenesh1_pg.C_LG_XII000892|Poptr1

gene model seems correct

71A like 44% to 71A22 65% to CYP71AN5

45% to 71AH1

$

10752455 MDPSIFLHQYWLELDRTILFSVLVLPFLAFCTIYFIKSIQTDKLNLPPSP 10752306

10752305 WKLPLIGNLHQVGRLPHRSLRTLSEKYGPLMLLHLGSSPALIVSSAETAK 10752156

10752155 EILKTHDKAFLDKPQTRAGDALFYGSSDIAFCSYGNYWRQAKKVCVLELL 10752006

10752005 SQRRVQAFQFAREEEVGKMVEKIQISCLSKVAIDLGAAFLTISNDILSRS 10751856

10751855 AFGRTYEEVDGQQLGELWRTAMDLIGEFCFKDFFPLLGWMDVITGLVSKL 10751706

10751705 KRTSKALDAFLDQVIEEHLVSRTEDDISDKKDLVDILLRIQKNGMTDIDL 10751556

10751555 SRDNLKAILM 10751526 (0)

10751444 DMFLGATDTTATTMEWAMAELVNNPSAMKKVQEEVRGVVGEKSKVEEI 10751301

10751300 DIDQMDFLKCIVK ETLRLHPPLFIGRRTSASLELEGYHIPANLKVLINAW 10751151

10751150 AIQRDPKLWDSPEEFIPERFANKSVDFKGQNHQFIPFGAGRRGCPGIAFA 10751001

10751000 VVEVEYVLANILYWFDWEFPEGITAEDLDMSEVFTPVIRKKSPLRLVPVA 10750851

10750850 HFPKTICN* 10750824

>CYP71AN5

LG_XV.21 (-) 6427585-6426017

fgenesh1_pg.C_LG_XV000592|Poptr1

gene model seems correct

71B like 46% to 71B2

65% to CYP71AN4, 47% to 71J1

$

6427585 MIMLNPLLCPFLLLSLLFLLRLVKRDKLNLPPSPPKLPIIGNLHQLGRLH 6427436

6427435 RSLRALSSKYGPLMLLHFGKVPTLIVSSAEVAHEVMKTHDVAFAGRPQTR 6427286

6427285 AADVLFYGCVDVAFCPYGEYWRQVKKICVLELLSQKRVQAFQFVREEEVA 6427136

6427135 NMVEKVRLSCLNGAAVDLSDMFLSVSNNIISRSALGRVYENEGCDESFGG 6426986

6426985 LSRKAIDLIASFCFKDMFHLLGWMDTLTGLVAGLKHTSKALHNFLDQVIE 6426836

6426835 EHESLMNNDESDMKDIVDILLDLQKNGTLDIDLTRENLKAILM 6426707 (0)

6426622 DMFVGGTDTTAAAMEWAMAELVKNPIVMKKAQEEVRRVVGKKSKLCE 6426482

6426481 KHINEMVYLKCVLKESLRLHAPAMIARETSEAVKLQGYDIPPKTRVLINA 6426332

6426331 WAIQRDPKQWERSEEFIPERFTNISVDFKGQHNQFMPFGGGRRLCPGLSF 6426182

6426181 AVIEAEMVLANLLYWFDWNIPHGGNPEDMDMSESHTLIIRKKTPLVLVPV 6426032

6426031 MLSP* 6426017

 

>CYP71AP1

LG_XII.7 (+) 10772698-10774358

fgenesh1_pm.C_LG_XII000331|Poptr1

gene model short at N-term

71B like 44% to 71B2 98% to CYP71AP2

$

10772698 MSLLQWLKECSKPTLFVVTIFLVVVLKFLMKDKLKKRKLNLPPSPAKLPI 10772847

10772848 IGNLHQLGNMPHISLRGLAKKYGPIIFLQLGEIPTVVISSAGLAKEVLKT 10772997

10772998 HDLVLSSRPQLFSAKHLLYGCTDIAFAPYGAYWRNIRKICILELLSAKRV 10773147

10773148 RSYSYVREEEVARLIRRIAESYPGITNLSSMIALYTNDVLCRVALGRDFS 10773297

10773298 GGGEYDRHGFQKMFDDFQALLGGFSLGDYFPSMEFVHSLTGMKSKLQYTF 10773447

10773448 RRFDQFFDEVIAEHRSSKGKQEEKKDLVDVLLDIQKDGSSEIPLTMDNIKAVIL 10773609 (0)

10773747 DMFAGGTDTTFITLDWAMTELIMNPHVMEKAQAEVRSVVGDRRVVQE 10773887

10773888 SDLPRLNYMKAVIKEILRLHPAAPVLLPRESLEDVIIDGYNIPAKTRIYV 10774037

10774038 NVWGMGRDPELWENPETFEPERFMGSGIDFKGQDFELIPFGAGRRICPAI 10774187

10774188 TFGIATVEIALAQLLHSFDWKLPPGLEAKDIDNTEAFGISMHRTVPLHVIAKPHFD* 10774358

>CYP71AP2v1

LG_XII.9 (+) 10777737-10779397

eugene3.00120825|Poptr1

gene model correct

71B like 43% to 71B2 98% to CYP71AP1

$

10777737 MSLLQWLKECSKPTLFVVTIFLVVVLKFLMKEKLKKRKLNLPPSPAKLPI 10777886

10777887 IGNLHQLGNMPHISLRGLAKKYGPIIFLQLGEIPTVVISSAGLAKEVLKT 10778036

10778037 HDLVLSSRPQLFSAKHLLYGCTDIAFAPYGAYWRNIRKICILELLSAKRV 10778186

10778187 RSYSYVREEEVARLIRRIAESYPGITNLSSMIALYANDVLCRVALGRDFS 10778336

10778337 GGGEYDRHGFQKMLDNFQALLGGFSLGDYFPSMEFVHSLTGMKSKLQYTF 10778486

10778487 RRFDQFFDEVIAEHRNSKGKQEEKKDLVDVLLDIQKDGSSEIPLTMDNIK 10778636

10778637 AVIL 10778648 (0)

10778786 DMFAGGTDTTFITLDWAMTELIMNPHVMEKAQAEVRSVVGDRRVVQE 10778926

10778927 SDLPRLNYMKAVIKEILRLHPAAPVLLPRESLEDVIIDGYNIPAKTRIYV 10779076

10779077 NVWGMGRDPELWENPETFEPERFMGSGIDFKGQDFELIPFGAGRRSCPAI 10779226

10779227 TFGIATVEIALVQLLHSFDWKLPPGLEAKDIDNTEAFGVSLHRTVPLHVI 10779376

10779377 AKPHFN* 10779397

>CYP71AP2v2

scaffold_9416 (-) 764-3

fgenesh1_pg.C_scaffold_9416000001|Poptr1

gene model short, runs off the end

1aa diff to 71AP2 duplicate seq. see LG_XII

$

764 MSLLQWLKECSKPTLFVVTIFLVVVLKFLMKEKLKKRKLNLPPSPAKLPI 615

614 IGNLHQLGNMPHISLRGLAKKYGPIIFLQLGEIPTVVISSAGLAKEVLKT 465

464 HDLVLSSRPQLFSAKHLLYGCTDIAFAPYGAYWRNIRKICILELLSAKRV 315

314 RSYSYVREEEVARLIRRIAESYPGITNLSSMIALYTNDVLCRVALGRDFS 165

164 GGGEYDRHGFQKMLDNFQALLGGFSLGDYFPSMEFVHSLTGMKSKLQYTF 15

 14 RRFD 3

>CYP71AP3

LG_XII.11 (+) 10791887-10793547

fgenesh1_pm.C_LG_XII000332|Poptr1

gene model wrong on N-term

71B like 42% to 71B2 95% to CYP71AP1

$

10791887 MALLQWLKECSKPTLLVVTIFLVVVLKFLMKEKLKKRKLNLPPSPAKLPI 10792036

10792037 IGNLHQLGNMPHISLRGLAKKYGPIIFLQLGEIPTVVISSAGLAKEVLKT 10792186

10792187 HDLVLSSRPQLFSAKHLFYGCTDIVFAPYGAYWRNIRKICILELLSAKRV 10792336

10792337 HWYSFVREEEVARLIRRIAESYPGITNLSSMIALYANDVLCRIALGKDFS 10792486

10792487 GGGEYDRHGFQKMLDDYQALLGGFSLGDYFPSMEFVHSLTGMKSKLQYTF 10792636

10792637 RRFDQFFDEVIAEHRSSKGKQEEEKDLVDVLLDIQKDGSSEIPLTMDNIK 10792786

10792787 AVIL 10792798 (0)

10792936 DMFAAGTDTNFITLDWAMTELIMNPHVMEKAQAEVRSVVGDRRV 10793067

10793068 VQESDLRRLNYMKAVIKEIFRLHPAAPVLVPRESLEDVVIDGYNIPAKTR 10793217

10793218 IYVNVWGMGRDPELWENPETFEPERFMGSGIDFKGQDFELIPFGAGRRSC 10793367

10793368 PAITFGVATVEIALAQLLHSFDWKLPPGLEAKDIDNTEAFGISMHRTVPL 10793517

10793518 HVIAKPHFD* 10793547

>CYP71AP4

LG_XV.20 (+) 6453904-655556

eugene3.00150650|Poptr1

gene model seems correct

71B like 44% to 71B2 90% to CYP71AP1

$

6453904 MAFLQWLKESSSPTLLFVTIFLLVALKFLVKGKLKNSKLNLPPSPAKLPI 6454053

6454054 IGNLHQLGNMPHISLRWLAKKYGPIIFLQLGEIPTVVISSVRLAKEVLKT 6454203

6454204 HDLVLSSRPQLFSAKHLFYGCTDIAFAPYGAYWRNIRKICILELLSAKRV 6454353

6454354 QWYSFVREEEVARLIHRIAESYPGTTNLSKMIGLYANDVLCRVALGRDFS 6454503

6454504 GGGEYDRHGFQKMLDDYQALLGGFSLGDYFPSMEFVHSLTGMKSKLQHTV 6454653

6454654 RRFDQFFDKVITEHQNSEGKQEEKKDLVDVLLDIQKDGSSEMPLTMDNIK 6454803

6454804 AVIL 6454815 (0)

6454945 DMFAAGTDTTFITLDWTMTELIMNPQVMEKAQAEVRSVVGDRIVVQESDL 6455094

6455095 PRLHYMKAVIKEIFRLHPAVPVLVPRESLEDVIIDGYNIPAKTRIYVNVW 6455244

6455245 GMGRDPELWENPETFEPERFMGSSIDFKGQDFELIPFGAGRRSCPAITFG 6455394

6455395 IATVEIALAQLLHSFDWELPPGIKAQDIDNTEAFGISMHRTVPLHVIAKP 6455544

6455545 HFN* 6455556

 

>CYP71AQ1

LG_XV.25 (+) 6442643-6444377

fgenesh1_pg.C_LG_XV000594|Poptr1

gene model seems correct

71A like 49% to 71AJ1 47% to 71A12, 47% to 71A26

$

6442643 MILHPYSLACLLFIFVTKWFFFNSARNKNLPPSPLKIPVVGNLLQLGLYP 6442792

6442793 HRSLQSLAKRHGPLMLLHLGNAPTLVVSSADGAHEILRTHDVIFSNRPDS 6442942

6442943 SIARRLLYDYKDLSLALYGEYWRQIRSICVAQLLSSKRVKLFHSIREEET 6443092

6443093 ALLVQNVELFSSRSLQVDLSELFSELTNDVVCRVSFGKKYREGGSGRKFK 6443242

6443243 KLLEEFGAVLGVFNVRDFIPWLGWINYLTGLNVRVEWVFKEFDRFLDEVI 6443392

6443393 EEFKANRVGVNEDKMNFVDVLLEIQKNSTDGASIGSDSIKAIIL 6443524 (0)

6443766 DMFAAGTDTTHTALEWTMTELLKHPEVMKKAQDEIRRITGSKIS 6443897

6443898 VTQDDVEKTLYLKAVIKESLRLHPPIPTLIPRESTKDVKVQGYDILAKTR 6444047

6444048 VIINAWAIGRDPSSWENPDEFRPERFLESAIDFKGNDFQFIPFGAGRRGC 6444197

6444198 PGTTFASSVIEITLASLLHKFNWALPGGAKPEDLDITEAPGLAIHRKFPL 6444347

6444348 VVIATPHSF* 6444377

 

>CYP71-un1 potri

LG_XIV (-) 9223410-9223207

eugene3.00141134|Poptr1

no comment

71 like 50% to 71AN4

57% to BM407381.1 potato roots EST

$

9223410 DIFSGGAGTTTTTIEWARLELMKSPRVMEKEQAELRQAFKGKSKVEEVDI 9223261

9223260 ENLDYLKAIIK*TLCLHP 9223207

>CYP71-un2 potri

LG_XIV (-) 9234477-9232794

eugene3.00141136|Poptr1

no comment

71 like 42% to 71D40P

$

9234477 MAMRRASSISHTLLQLHCSFPALSTFAIQIFLFMLVKYWKKCKTSKLPLI 9234328

9234327 GNLHQLNGGPLPHHGTTELSKKYGPAMQLQ 9234238

9233132 GMFAAGSDTTVTTIEWAMSELLSGPGGLDRAQTEV*QVFEGEN* 9233001

9233000 KSRTLGNQIIRDQLSKNLFRLHPPVPLLPREVTENQWAYDTREKQNDYNV 9232851

9232850 WAISRDPQQGIDANSFQPE 9232794

 

>CYP71-un3 potri

LG_VI (-) 1075479-1074052

no model

no comment

71 like pseudogene 40% to 71D26

$

1075479 SSPKMAGEVLKTRDIIFA* 1075423

1075422 RPERLASKILKFRIKDIVFSL* 1075357

1075356 GGYWRQMRKICTMELLSPK 1075300

XXXXXXXXXX

1075277 DEVSKLIKSIQAFTRRAMDFNEKIIFLTSVITCKTTLGN*CKD* 1075146

1075145 DAMISLTGEGSHLA* 1075101

1075100 GFNIVDLYPSLEFLLAIGIKLKLKKVLDQINTTLGSIINEHKEKLKGNIE 1074951

1074950 AVEEDLVDVLL 1074918

XXXXXXXXXXXXXXXXXXXXXXXXXXXX

1074462 TISSSTIIDWAMTEMMRNPRVLKKS*AEIRQALK* 1074358

1074357 NKTITEADIQELNYLKSVIK* 1074295

1074294 TMRLHPPIPLLLLIESREIC* 1074232

1074231 IDRYVTPIKTKVMVNAWAKMRDPEYWQNTENFIPKILNS 1074115

1074114 NTTLDFIGTNFTYMPFRVGKR 1074052

>CYP71-un4 potri

LG_XVI (+) 158690-159330

eugene3.00160030|Poptr1

gene model wrong

71 like pseudogene 47% to LG_VI (-) 1074348

40% to 71D26

$

158690 LIEFVRASAGRSMEFTEEVFFLTRV 158764

158812 DTMISLTKERSLLAGGFNVVDDLYPSLECLQGVVGMKAEKVLAQINQILDNI 158967

158968 NNEHKEMGNSETIEEDLVDMLVRLQEDGTFKCPIE 159072

159072 IFNIKVSL* 159098

159246 DMLFAGTGVHRM 159281

159280 WAMKEIMKNPRVVKKAQ 159330

>CYP71-un5 potri

LG_XI (-) 12867601-12867395

no gene model

no comment

71D like pseudogene no gene model at JGI

53% to CYP71D31P

$

12867601 ENDHFEYIPFGSGRRVCPYGVAIVEVTLASFLYLFEWELSSGMVPENLDM 12867452

12867451 DEAFGIAFRRKNNMCLIPI 12867395

 

>CYP73A42

LG_XIII (-)12825303-12821368

eugene3.00131281|Poptr1

gene model correct

98% to 73A13 98% to 73A16

85% to 73A5, 2 introns, 96% TO 73A43 10989681-10992498

$

12825303 MDLLLLEKTLLGSFVAILVAILVSKLRGKRFK 12825208

12825207 LPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVS 12825058

12825057 SPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 12824908

12824907 MTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLMM 12824758

12824757 YNNMYRIMFDRRFESEDDPLFNKLKALNGERSRLAQSFDYNYGDFIPILR 12824608

12824607 PFLRGYLKICQEVKERRLQLFKDYFVDERK 12824518 (2)

12823513 KLASTKNMNNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVA 12823382 (1)

12821967 AIETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGP 12821860

12821859 GHQITEPDTYKLPYLNAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPA 12821710

12821709 ESKILVNAWWLANNPAHWKNPEEFRPERFLEEEAKVEANGN 12821587

12821586 DFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTAE 12821437

12821436 KGGQFSLHILKHSTIVAKPRSF* 12821368

>CYP73A43

LG_XIX (+)10989681-10992498

estExt_Genewise1_v1.C_LG_XIX2612|Poptr1

gene model corrrect

84% to 73A5, 2 introns, 96% TO 73A42 12825303-12821368

$

10989681 MDLLLLEKTLLGSFVAILVAILVSQLRGKRFKLPPGPLPVPVFG 10989812

10989813 NWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPDLAKEVLHTQ 10989962

10989963 GVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ 10990112

10990113 QYRYGWEEEAAQVVEDVKKNPEAATHGIVLRRRLQLMMYNNMYRIMFDRR 10990262

10990263 FESEEDPLFNKLKALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICKE 10990412

10990413 VKERRLQLFKDYFVEERK 10990466 (2)

10990867 KLGSTKSMSNEGLKCAIDHILDAQKKGEINEDNVLYIVENINVA 10990998 (1)

10991899 AIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPGHQITEPDTNKLPY 10992048

10992049 LNAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANN 10992198

10992199 PAKWKNPEEFRPERFFEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPI 10992348

10992349 LGITLGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF* 10992498

>CYP73A44

Scaffold_164 (+)432328-434026

eugene3.01640067 |Poptr1

gene model correct

65% to 73A5, 1 intron 66% to 73A42 and 73A43

79% to 73A27 tobacco

$

432328 MASFVTKSMGFTLLAVASVSCIKFACPNLSTYFSPLPISVILPLLPLIVYLFSSVFTK 432501

432502 SSTGDLPPGPVSYPMFGNWLQVGNDLNHRLLASMSQTYGPVFLLKLGSKN 432651

432652 LAVVSDPELANQVLHTQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGEHWR 432801

432802 KMRRIMTLPFFTNKVVNQYSTSWEQEMDLVVDDLRANEKVRTEGIVIRKR 432951

432952 LQLMLYNIMYRMMFDAKFQSQEDPLFVQATRFNSERSRLAQSFEYNYGDF 433101

433102 IPWLRPFLRGYLNKCRDLQQRRLAFFNNYYIEKRR 433206 (2)

433292 KIMAANGEKHKVSCAMDHIIQAQMKGEISEENVLYIVENINVAAIETTL 433438

433439 WSMEWAIAELVNHPTVQRKIRDEIRAVLKGSPVTESNLHELPYLQATIKE 433588

433589 TLRLHTPIPLLVPHMNLEEAKLGGFTIPKESKVVVNAWWLANNPEWWEKP 433738

433739 SEFRPERFLEEERDTEAIVGGKVDFRFLPFGVGRRSCPGIILAMPILGLI 433888

433889 VARLVSNFEMIAPPGMEKIDVSEKGGQFSLHIASHSTVVFKPIKA* 434026

>CYP73A45P

LG_VI (-)5146670-5145983

eugene3.00060651|Poptr1

eugene3.00060650|Poptr1 gene model short

pseudogene 82% to 73A44

$

5146670 SCAMDHMIHAQMKGVTSEENVLYIAENINVAGIETALWS 5146554

5146553 TAELVNHPTVQKKIRDEITTVLKGKPVTESNLHELPY*QATIKET 5146419

5146416 LHAPIPLLVPRMNLEEAKLGGFTIPKESKVVVNAWWLSNNPDW*EKPSEF 5146267

5146266 RPERVLEEDRDTESVVGGKVDFRFASY 5146186

5146189 LPFGVGRRSCPGIILAMPIMGLVNARLVSNFEMKAPPATGKID 5146061

5146060 ASEEGGQFSLHIANHSAVVFDPIKA* 5145983

 

>CYP75A13

LG_I (+) 19972937-19975122

fgenesh1_pg.C_LG_I001972 [Poptr1:64620]

no comment

80% to 75A8 87% to CYP75A12

flavonoid 3',5'-hydroxylase

$

19972937 MDVDPVLPGKLTLAALLFFISYQFTGSFIRKLLHRYPPGPRGWPIIGAIP 19973086

19973087 LLGDMPHVTLAKMAKKHGPVMYLKMGTRDMVVASNPDAARAFLKTLDLNF 19973236

19973237 SNRPIDGGPTHLAYNAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWAP 19973386

19973387 VRVTELGHMLRAMCEASRKGDPVVVPEMLTYAMANMIGQIILSRRVFVTK 19973536

19973537 GSESNEFKDMVVELMTSGGFFNIGDFIPSVAWMDLQGIERGMKKLHRRFD 19973686

19973687 VLLTKMIEDHSATSHERKGKPDFLDVLMANQENSDGARLCLTNIKALLL 19973833 (0)

19974493 DLFTAGTDTSSSVIEWALAEMLKNQSILKRAQEEMDQVIGRNRRLVESDI 19974642

19974643 PKLPYLQAVCKETFRKHPSTPLNLPRIADQACEVNGYYIPKGARLSVNIW 19974792

19974793 AIGRDPDVWDNPEVFTPERFFTEKYAKINPRGNDFELIPFGAGRRICAGA 19974942

19974943 RMGIVLVEYILGTLVHSFDWKLPEDVDLNMDEVFGLALQKAVPLSAMVSP 19975092

19975093 RLEPNAYLA* 19975122

>CYP75A12

LG_IX (-) 6112639-6110882

fgenesh1_pm.C_LG_IX000390|Poptr1

no comment

87% to CYP75A13

$

6112639 MVLLWELTMAALFFFINYLLTRCLIRKLSTRQL 6112541

6112540 PPGPRGWPIIGAIPVLGAMPHAALAKMAKQYGPVMYLKMGTCNMVVASTP 6112391

6112390 DAARAFLKTLDLNFSNRPPNAGATHLAYNAQDMVFADYGPRWKLLRKLSN 6112241

6112240 LHMLGGKALEDWAHVRVSELGHMLRAMCEASRKGEPVVVPEMLTYAMANM 6112091

6112090 IGQIILSRRVFVTKGSESNEFKDMVVELMTSAGLFNVGDYIPSVAWMDLQ 6111941

6111940 GIERGMKRLHRRFDVLLTKMMEEHIATAHERKGKPDFLDVLMANQENLDG 6111791

6111790 EKLSFTNIKALLL 6111752 (0)

6111511 NLFTAGTDTSSSIIEWSLAEMLKNPRILKQAQDEMDQVIGRNRRLEESDI 6111362

6111361 PKLPYLQAICKETFRKHPSTPLNLPRIADQACEVNGYYIPKGTRLSVNIW 6111212

6111211 AIGRDPDVWDNPLDFTPERFFSEKYAKINPQGNDFELIPFGAGRRICAGT 6111062

6111061 RMGIVLVQYILGTLVHSFDWKLPKDVELNMDEVFGLALQKAVPLSAMVTP 6110912

6110911 RLEPNAYLA* 6110882

>CYP75B12

LG_XIII (-) 6200373-6197990

estExt_fgenesh1_pg_v1.C_LG_XIII0709|Poptr1

no comment

75B like 75% to 75B1

$

6200373 MSPLILYSALLAIFVYCLLQLRSLRDRHGKPLPPGPKPWPLVGNLPHLGP 6200224

6200223 MPHHSMAALAKTYGPLMHLRFGFVDVVVAASASVAAQFLKVHDSNFSSRP 6200074

6200073 PNSGAKHIAYNYQDLVFAPYGPRWRMLRKISSVHLFSAKSLDDFRHIRQ 6199927 (0)

6199385 EEVAVLTGALTRSGPTTPVNLGQLLNVCTANALGRVMLGRRVFGDGSGD 6199239

6199238 GDPKADEFKSMVVEVMVLAGVFNIGDFVPALEWLDLQGVAAKMKKLHKRF 6199089

6199088 DAFLTNIVEEHKTSSSTASVRSEKHTDLLSTLIALKEQQDVDGEEGKLTD 6198939

6198938 TEIKALLL 6198915 (0)

6198643 LQNMFTAGTDTSSSTVEWAIAELIRHPDILAQVKQELDSVVGRDRLVTEL 6198494

6198493 DLAQLTYLQAVVKETFRLHPSTPLSLPRIAAESCEIGGYHIPKGSTVLVN 6198344

6198343 VWAIARDPDVWTKPLEFRPERFLPGGDKADVDVKGNDFELIPFGAGRRIC 6198194

6198193 AGMSLGLRMVQLLTATLIHAFDWDLADGLVPEKLNMDEAYGLTLQRADPL 6198044

6198043 MVHPRPRLSPKVYRTPN* 6197990

 

>CYP76A8

LG_VI (-) 6443611-6441801

eugene3.00060817|Poptr1

gene model seems correct

76C like 49% to 76G1

52% to scaffold_28  (+)  3043896

$

6443611 MEWLWPSNLSISLSLFSLALLSLLLLRAKSSQKRHPPGPSGWPIFGNLFD 6443462

6443461 LGSMPHRTLTDMRQKYGNVIWLRLGAMNTMVILSAKAATEFFKNHDLSFA 6443312

6443311 DRTITETMRAHGYDQGSLALAPYGSYWRVLRRLVTVDMIVTKRINETASI 6443162

6443161 RRKCVDDMLQWIEEESCKVGKAAGIHVSRFVFLMTFNMLGNLMLSRDLLD 6443012

6443011 PESKVGSEFFDAMMGLMEWSGHANLADFFPWLRRLDLQGLRKNMERDLGK 6442862

6442861 AMEIASKFVKERVEDKIVTSDSRKDFLDVLLEFRGSGKDEPDKLSERDVN 6442712

6442711 IFIL 6442700 (0)

6442415 EIFLAGSETTSSTVEWALTELLCNPESMIKVKAELAQVVRASKKVEES 6442272

6442271 DMENLPFLQAVVKETLRLHPPIPFLVPRRAMQDTNFMGYDIPKNTQVLVN 6442122

6442121 AWAIGRDPDAWDDPSCFMPERFIGKRVDYRGQDLEFIPFGAGRRMCAGVP 6441972

6441971 LAHRVLHLILGSLLHHFDWEFEANVNPASVDKKDRMGITVRKSEPLMAVP 6441822

6441821 KRFNKA* 6441801

>CYP76A9P

scaffold_28 (+) 3042728-3044399

eugene3.00280293|Poptr1

gene model short missing EXXR and heme signature

76G like pseudogene 41% to 76G1

52% to LG_VI (-)  6442139

$

3042728 MESAWNLLAG*GLFS 3042782

3042784 LKQRKLRVDTKQQQPGPPAWPVF 3042852

3042853 GNIFDLGAIPHQTLYKLKEKYGPVIWLKLGYTNTLVIQSAETAAGLFKNH 3043002

3043003 DLAFSDRKVLLVFTAHNYYQGSLALGWYGPNWRMLQ 3043110

3043113 SLLNKAHDKLITKQIDQTAVLRQKCIDDMIRYIEEDVAEAQAQGESGEIK 3043262

3043263 GAHYLFLMTFNLIGNLVLSRDLVNPRSKDGHKFYDAMNNVMKRAGTRNVA 3043412

3043413 EFLTFLKWLDPQGIMRNMVQDMRQTMRIVEKFVKERTEEWKSGRKKTNDF 3043562

3043563 LDALLEHEGDEKDGPDVISDQNRLIIIL 3043646 (0)

3043773 EMSFGGSETTSTAMEWAMTELLRNPMVMG*ATEELHQVVGPK* 3043901

3043902 KVEESDIDQLPYLQPVVKETLRLHPVIPLLLPQNTLEDTNFMGHLIPKDT 3044051

3044052 QVFAKA*GIGRDPDSWEDPMSFKPERFLGSNIEYRGQNFEFIPFGSGR* 3044198

3044199 ICVGMLLAHRVVLLGLASLLHCFDWELGSNYAPGTIDVNERMGLTVQKLI 3044348

3044349 PLKAKPKQIGRMINVK* 3044399

>CYP76A9P-de2b

scaffold_28 (+) 3040250-3041175

no model

no comment

76 like two C-TERM fragments

$

3040250 MASLLHSFDWEISSGTNPETLD 3040315

3041175 TLDMNWWMGITVRKLVPLYAIPRKI 3041249

>CYP76F3

LG_Ia (-) 8580345-8578719

fgenesh1_pm.C_LG_I000361 [Poptr1:48778]

gene model wrong at N-term

47% to 76C4, 71% to LG_III (+) 11354190

$

8580345 MESLINLLLCVLFTFVL 8580295

8580294 VKILHFIARGSKTESSGKLPPGPAALPIIGSLLDLGDKPHKSLARLAKTH 8580145

8580144 GPLMSLKLGQITTIVISSPTLAKEVLQKHDVSFSNRTIPDALRAHKHHEL 8579995

8579994 GLPWVPIAMRWRNLRKVCNSYIFTNQKLDANQDLRRKKIQELVALVQEHC 8579845

8579844 LAGEAMDIGQAAFTTALNALSNSIFSLNLSDSNSETASQLKEVVGGIMEE 8579695

8579694 AGKPNLADYFPVLRRIDLQGIKRRMTIHFGKILNIFDGIVNERLQLRKMQ 8579545

8579544 GYVPVNDMLDTLLTISEDNNEDIMETSQIKHLFL 8579443 (0)

8579324 DLFAAGTDTTSSTLEWAMAELLHNPRTLSIARTELEQTIGKGSLIEE 8579184

8579183 SDIVRLPYLQAVIKETFRLHPAVPLLLPRKAGENVEISGYTIPKGAQLFV 8579034

8579033 NAWAIGRDPSLWEDPESFVPERFLGSDIDARGRNFELIPFGAGRRICPGL 8578884

8578883 PLAMRMLHMMLGSLIHSFDWKLENGVTPESMDMEDKFGITLGKARSLRAV 8578734

8578733 PIQL* 8578719

>CYP76F4

LG_III (+) 11353007-11354677

estExt_Genewise1_v1.C_LG_III0204|Poptr1

gene model seems correct

76C like 47% to 76C4

71% to LG_I   (-)  8580324

$

11353007 MNFFISVLLYFLLTFAVIQSLDYILRRSKRKSGKLPPGPSRLPIVGNLLD 11353156

11353157 LGDKPHKSLAKLAKTHGQLMSLKLGQVTTIVVSSATMAKEVLQKHDLTFC 11353306

11353307 NRTVVDAVRALDHHEAGIAWLPVATRWRNLRKICNSHIFTAQKLDANQDL 11353456

11353457 RRKKVQDLLAEVQERCLVGEAVDLRQAAFTATLNALSNTVLSLDLTDLSS 11353606

11353607 DIAREFKEHISCIMDEAGKPNLVDYFPLLRRIDPQGIRRRTAIHFGKVFD 11353756

11353757 LFDRLIIERLQLRKVKGYIPLDDMLDTLLTISEVNNEEMDATRIKHFFL 11353903 (0)

11354058 DLFGAGTDTTSSTLEWAMAELLHSPKTLLKARAELERTIGEGNLLEESDI 11354207

11354208 TRLPYLQAVIKETLRLHPAVPFLLPHKAGADAEIGGFTVPKNAQVLVNVW 11354357

11354358 AIGRDPSMWEDPNSFVPERFLESGIDHRGQNFEFIPFGSGRRICPGLPLA 11354507

11354508 MRMLPLMLGSLILSFDWKLADGVTPENLNMDDKFGLTLLKAQPLRAIPIT 11354657

11354658 RELKHG* 11354677

>CYP76G-se1[2]

scaffold_256 (+) 532-1167

eugene3.02560001|Poptr1

no comment

76G like exon 2 only

97% to scaffold_256 (+) 69529

$

 532 EMFTAGTDTTTSTLEWAMAELLRNPKVMKTVQSELRSTIGLNKKLEDKDI 681

 682 ENLPYLKAVIRETLRLHPPLPFLVPHMAMNPCKMLGYYIPKETTILVNVW 831

 832 AIGRDSKTWDDPLVFKPERFLEPNMVDYKGRHFEFIPFGSGRRMCPAMPL 981

 982 ASRVLPLALGSLLLSFDWILPVGLKPEDMDMTEKIGITLRKSVPLKVIPT 1131

1132 PYKGSSNHYGF* 1167

>CYP76G-se2[1]

scaffold_256 (+) 26660-27136

eugene3.02560004|Poptr1

no comment

76G like exon 1 fragment

1 aa diff to scaffold_256  6  (+)    34579

$

26660 MDYEIAGLVLAVLLWVAWAVVTQRRYRRFEEQGQLPPGPRPLPVVGNIFL 26809

26810 LGWAPHESFANLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA 26959

26960 GRKIYEAIRGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVSSRLDAMQGARTRVHRWHA 27136

>CYP76G2

scaffold_256 (+) 32430-34839

fgenesh1_pg.C_scaffold_256000007|Poptr1

gene model correct

76G like 66% to 76G1

97% to scaffold_256 (+) 69529

$

32430 MDYEIAGLVLAVLLWVAWAVVTQRRYRRFEEQGQLPPGPRPLPVVGNIFL 32579

32580 LGWAPHESFANLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA 32729

32730 GRKIYEAIRGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVTSRLDAMQGA 32879

32880 RTRCIDGMLQYIEDDSANGTSAIDLGRYFFLMAFNLIGNLMFSKDLLDPK 33029

33030 SEKGAKFFQHAGIVLELAGKPNMADFFPILRWLDPQGVRRKTQFHVARAF 33179

33180 EIAGGFIKERTESTQKENSRDDKRKDYLDVLLEFRGDGVEEPSRFSSTTI 33329

33330 NAIVL 33344 (0)

34204 EMFTAGTDTTTSTLEWAMAELLRNPNVMKTVQSELRSTIGPNKKLEDKDI 34353

34354 ENLPYLKAVIRETLRLHPPLPFLVSHMAMNPCKMLGYYVPKETTILVNVW 34503

34504 AIGRDSKTWDDPLVFKPERFLEPNMVDYKGRHFEFIPFGSGRRMCPAMPL 34653

34654 ASRVLHLALGSLLLSFDWILPDGLKPEDMDMTEKIGITLRKNVPLKVIPT 34803

34804 PYKGSSHHYGF* 34839

>CYP76G3

scaffold_256 (+) 67375-69789

eugene3.02560008|Poptr1

gene model correct

76G like 66% to 76G1

97% to scaffold_256 (+) 34579

$

67375 MDYEIAGLVLAVLLWVAWAVVTERRYRRFEEQGQLPPGPRPLPVVGNIFL 67524

67525 LGWAPHESFANLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA 67674

67675 GRKIYEAIRGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVTSRLDAMQGA 67824

67825 RTRCIDGMLQYIEDDSANGTSAIDLGRYIFLMAFNLIGNLMFSKDLLDPK 67974

67975 SEKGAKFFQHAGKVVELAGKPNMADCFPILRWLDPQGIRRKTQFHVARAF 68124

68125 EIAGGFIKERTESTQKENSRDDKRKDYLDVLLEFRGDGVEEPSRFSSTTI 68274

68275 NAIVL 68289 (0)

69154 EMFTAGTDTTTSTLEWAMAELLHNPKVMKTVQSELRSTIGPNKKLEDKDI 69303

69304 ENLPYLKAVIRETLRLHPPLPFLVPHMAMNPCKMLGYYIPKETTILVNVW 69453

69454 AIGRDSKTWDDPLVFKPERFLEPNMVDYKGRHFEFIPFGSGRRMCPAMPL 69603

69604 ASRVLYLALGSLLLSFDWILPDGLKPEDMDMTEKIGITLRKSVPLKVIPT 69753

69754 PYKGSSNHDGF* 69789

>CYP76G4

scaffold_256 (+) 78586-81678

fgenesh1_pg.C_scaffold_256000012|Poptr1

gene model seems correct

76G like 68% to 76G1

97% to scaffold_256 (+)   100990

$

78586 MDYEIAGLVLAVLLWVAWAVVTERRYRRSEEQGQLPPGPRPLPVVGNIFQ 78735

78736 LGWAPHESFTNLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA 78885

78886 GRKIYEAMKGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVTSRLDAMQGA 79035

79036 RTRCIDGMLQYIEDGSANGTRAIDLGRYIFLMAFNLIGNLMFSKDLLDPK 79185

79186 SEKGAKFFQHAGKVTELAGKPNMADFLPILRWLDPQGIRRKTQFHVARAF 79335

79336 EIAGGFIKERTESVQKENSRDDKRKDYLDVILEFRGDGVEEPSRFSSTTI 79485

79486 NVIVF 79500 (0)

81043 EMFTAGTDTTTSTLEWAMAELLHNPKVLKTVQSELRSTIGPNKKLEDKDV 81192

81193 ENLPYLKAVIRETLRLHPPLPFLVPHMAMNPCKMLGYYVPKETTILVNVW 81342

81343 AIGRDSKTWDDPLVFKPERFLEANMVDYKGRHFEFIPFGSGRRMCPAMPL 81492

81493 ASRVLPLALGSLLLSFDWILPDGLKPENMDMTEKIGITLRKSVPLKVIPT 81642

81643 PYKGSSNHDGF* 81678

>CYP76G5

scaffold_256 (+) 98560-101256

eugene3.02560012|Poptr1

gene model correct

76G like 68% to 76G1

97% to scaffold_256 (+) 81418

$

 98560 MDYEIAGLVLAVLLWVAWAVVTERRYRRSEEQGQLPPGPRPLPVVGNIFQ 98709

 98710 LGWAPHESFTNLARVHGPIMTIWLGSMCNVVISSSEVAREMFKNHDAVLA 98859

 98860 GRKIYEAMKGDFGNEGSIITAQYGPHWRMLRRLCTTEFFVTSRLDAMQGA 99009

 99010 RTRCIDGMLQYIEDGSANGTSAIDLGRYIFLMAFNLIGNLMFSKDLLDPK 99159

 99160 SEKGAKFFQHAGKVMELAGKPNMADFLTILRWLDPQGIRRKTQFHVARAF 99309

 99310 EIAGGFIKERTESMQKENSRDDKRKDYLDVLLEFRGDGVEEPSRFSSTTI 99459

 99460 NVIVF 99474 (0)

100624 EMFTAGTDTTTSTLEWAMAELLRNPKVLKTVQSELRSTIGPNKKLEDKDI 100773

100774 ENLPYLKAVIRETLRLHPPLPFLVPHMAMNPCKMLGYYIPKETTILVNVW 100923

100924 AIGRDSKTWDDPLVFKPERFLESNMVDYKGRHFEFIPFGSGRRMCPAMPL 101073

101074 ASRVLPLALGSLLLSFDWILPEGLKPEDMDMTEKMGITLRKSVPLKVIPT 101223

101224 PYKRSSDHYGF 101256

>CYP76T1

LG_II (+) 11243028-11244627

eugene3.00021389 [Poptr1:552074]

gene model short at N-term, frameshift

76C like 51% to 76C4

97% to LG_II    (+) 11302436

$

11243028 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTVLPPA 11243141

11243141 PRQLPIIGNILALGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSP 11243281

11243282 NIAKEALQKHDQALSSRTVPDALHVQYYNYHKNSMIWLPASTQWKFLRKL 11243431

11243432 TATQMFTSQRLDASRALRGKKVQELLEYVHEKCNNGHAVDVGRSVFTTVL 11243581

11243582 NLISNTFFSLDVTNYNSDLSQEFSNLVVGFLEQIGKPNIADYFPILRLVD 11243731

11243732 PQGIRRKTNNYLKRLTQIFDSIINERTRLRSSSVASKASHDVLDALLILA 11243881

11243882 KENNTELSSTDIQVLLI 11243932 (0)

11244034 DFFIAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKC 11244183

11244184 PYLQAIVKETFRLHPPSPFLPRKAVSEVEMQGFTVPKNAQVLITIWAIGR 11244333

11244334 DPAIWPEPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKMV 11244483

11244484 HLTLASLIHSFDWKIADDLTPEDIDMSETFGFTLHKSEPLRAIPMKT* 11244627

>CYP76T2

LG_II (+) 11302436-11304039

eugene3.00021394|Poptr1

gene model seems correct

76C like 50% to 76C4

96% to LG_II       (+) 11371594

$

11302436 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTVLPPGPRQLPIIGNILA 11302585

11302586 LGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS 11302735

11302736 SRTVPDALHVQYYN 11302777

11302778 YHKNSMVWLPASTHWKFLRKLTATQMFTSQRLDASRALRGKKVQELLEYV 11302927

11302928 HEKCNNGHAVDVGRSVFTTVLNLISNTFFSLDVTNYNSDLSQEFSNLVVG 11303077

11303078 VLEQIGKPNIADYFPILRLVDPQGIRRKTNNYLKRLTQIFDSIINERTRL 11303227

11303228 RSSSVASKASHDVLDALLILAKENNTELSSTDIQVLLI 11303341 (0)

11303443 DFFIAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKC 11303592

11303593 PYLQAIVKETFRLHPPSPLLLPRKAVSEVEMQGFTVPKNAQILINIWAIG 11303742

11303743 RDPAIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKM 11303892

11303893 VHLTLASLIHSFDWKIAGDLTPEDIDTSETFGLTLHKSEPLRAIPMKT* 11304039

>CYP76T3

LG_II (+) 11339047-11340633

fgenesh1_pm.C_LG_II000640 [Poptr1:342710]

gene model seems correct

76C like 52% to 76C4

95% to LG_II      (+) 11302436-11304039

$

11339047 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTILPPGPRQLPIIGNILA 11339196

11339197 LGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS 11339346

11339347 SRTVPDAVRGHHKNSILWLPASSHWKFLKKLTATQMFTSQRLDASRALRG 11339496

11339497 KKVQELLEYVHEKCNNGHAVDVGRSVFTTVLNLISNTFFSLDIANYNSDL 11339646

11339647 SQEFSYLVVGVMEQIGKANIADYFPILRLVDPQGIRRKTNNYLKRLTQIF 11339796

11339797 DSIINERTRLRSSSVASKASHDVLDALLILAKENNTELSSTDIQVLLL 11339940 (0)

11340037 DFFIAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKC 11340186

11340187 PYLQAIVKETFRLHPPAPLLLPRKAVSEVEMQGFTVPKNAQILINIWAIG 11340336

11340337 RDPTIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKM 11340486

11340487 VHLALASLIHSFDWKIADDLTPEDIDTSETFGITLHKSEPLRAIPMKT* 11340633

>CYP76T4

LG_II (+) 11361815-11362516

eugene3.00021397|Poptr1

no comment

76C like 93% to LG_II    (+) 11371594

(sequence gap)

$

11361815 RRKSGCTVLPPGPRQLQIIGNILALGDKPHRTLAKLSQTYGPLMTLKLGR 11361964

11361965 ITTIVISSPNIAKEALQKHDQALSSRTVPDALRVHHRNSILWLPASTHWK 11362114

11362115 FLRKLTATQMFTSQRLDASQALRGKKAQEMLEYVHENCNNGHAVDIRRSV 11362264

11362265 FTTSLNLISNTFFSLDIANYNSDLSQEFSDLVVGVTEQIGKPNIADYFPI 11362414

11362415 LRLVDPQGVRRKTNNYLKRLTQIFDSIINERTRP 11362516

>CYP76T5

LG_II (+) 11370278-11371869

fgenesh1_pg.C_LG_II001397 [Poptr1:347891]

gene model seems correct

76C like 52% to 76C4

96% to LG_II         (+) 11302436

$

11370278 MEYLFFVLLISFTWACLHVPIASILLRRKSGCTVLPPGPRQLPIIGNILA 11370427

11370428 LGDKPHRTLANLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS 11370577

11370578 SRTVPDALRVHHKNSMIWLPASTHWKFLRKLTATQMFTSQRLDASRALRG 11370727

11370728 KKVQELLEYVHENCNNGHAVDVGRSVFTTVLNLISNTFFSLDVTNYNSDL 11370877

11370878 SQEFSDLVVGVMEQIGKPNIADYFPILRLVDPQGIRRKTNNYLKRLTQIF 11371027

11371028 DSIINERTRLRSSSVASKASHDVLDALLILAKENNTELSSTDIQVLLI 11371171 (0)

11371273 DFFIAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQQVEGPVQESDISKC 11371422

11371423 PYLQAIVKETFRLHPPVPLLLPRKAVSEVEMQGFTVPKNAQILINIWAIG 11371572

11371573 RDPAIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLGHKM 11371722

11371723 VHLTLASLIHSFDWKIADDLTPEDIDTSETFGITLHKSEPLRAIPMKT* 11371869

>CYP76T6

scaffold_5854 (+) 673-2263

eugene3.58540001|Poptr1

gene model short in middle 1 frameshift

76 like 51% to 76C4 50% to 76F2 Vitis vinifera

97% to LG_II   (+) 11340358

$

 673 MEYLFYLLLISFCWACLHVLNASVLLRRKSGCTILPPGPRQLPIIGNILA 822

 823 LGDKPHRTLAKLSQTYGPLMTLKLGRITTIVISSPNIAKEALQKHDQALS 972

 973 SRTVPDAVRGHHKNSILWLPASSHWKFLKKLTATQMFTSQRLDASRALRG 1122

1123 KKVQELLEYVHEKCN 1167

1167 QGHAVDVGRSVFTTVLNLISNTFFSLDIANYNSDLSQEFSYLVVGVM 1307

1308 EQIGKANIADYFPILRLVDPQGIRRKTNNYLKRLTQIFDSIINERTRLRS 1457

1458 SSVASKASHDVLDALLILAKENNTELSSTDIQILLL 1565 (0)

1667 DFFNAGTDTTSSTVEWAMTELLLNPDKMVKAKNELQEIEGPVQESDISKC 1816

1817 PYLQAIVKETFRLHPPAPLLLPRRAVSEVEMQGFTVPKNAQILINIWAIG 1966

1967 RDPAIWPDPNSFKPERFLECQADVKGRDFELIPFGAGRRICPGLPLAHKM 2116

2117 VHLTLASLIHSFDWKIADDLTPEDIDMSETFGLTLHKSEPLRAIPMKT* 2263

 

>CYP80C1

LG_XII (-) 13076542-13074912

estExt_fgenesh1_pg_v1.C_LG_XII0135|Poptr1

gene model seems correct

76G like 45% to 76C2 49% to 80B2

66% to LG_XV        (-) 10045180

$

13076542 MDQRFLQRLFSLVSSAEILFLLLLPLTFIILKNIIRSCSESKYLPPGPKP 13076393

13076392 WPIIGNLLHVGNQPHVSLAEIAKIHGPLISLRLGTQLLVVGSSAKAAAEI 13076243

13076242 LKTHDRFLSARHVPQVIPRESHVLRRVALVWCPESIDTWKLLRGLCRTEL 13076093

13076092 FSAKAIESSATLREKKVGELMDFLVAREGKVVSIGEVVFSTVFNTISNLL 13075943

13075942 FSNDLAGLEEKGMSSGLKSHVRKLMLLVATPNIADFYPIFAGLDPQGLRR 13075793

13075792 KLSKLVEETFAIWAINIKERRNSYVHDSPKRDFLDVFLANGFDDDQINWLAA 13075637 (0)

13075517 ELFSAGTDTTATTIEWAVAEILKNKEVMKKVDEELEREITKNTISESDVS 13075368

13075367 GLPYLNACIKETLRLHPPVPLLVPHRATETCEVMKYTIPKDSQVLVNVWA 13075218

13075217 ISRDPSTWEDPLSFKPDRFLGSNLEFKGGNYEFLPFGAGRRICPGLPMAN 13075068

13075067 KLVPLILASLIRCFDWSLPNGEDLAKLDMKDKFGVVLQKEQPLVLVPKRRL* 13074912

>CYP80C-se1[1]

scaffold_12820 (-) 312-52

no gene model

no comment

76C like N-term 50% to 76C3 no gene model at JGI

probable pseudogene 65% to LG_XII      (-) 13076542

$

312 ILKCVSSPSSKNQSLPPGPKPWPIIGNILHFGKKPHISTAYFAKTHGPLISLKLGKQLLIVGSSKR 115

114 AATXILKSHDRLLSARYVFKA 52

>CYP80C2

LG_XV (-) 10046207-10044971

fgenesh1_pg.C_LG_XV001071|Poptr1

Missing N-term in a seq gap

76C like 43% to 76C2

68% to LG_XII    (-) 13075301

 (seq gap)

$

10046207 RISIVWATQCSDGWKSLRALCRNELFSAKAIESQAVLREKKMGEMVGFIG 10046058

10046057 RREGEVVGIGEVVLAIVFNTIANLLFSVDLIGLEDDGATTGLKSLMWRMM 10045908

10045907 KLGATPNIADFYPILGGIDPQGLKRKMAVCVNQMFDIWGKYINERREKHV 10045758

10045757 HDGPRSDFLDVFLANGFEDLQINWLAL 10045677 (0)

10045576 ELLSAGTDTTATTVEWAIAELLKNKEVLKKVSEEIKRETDTNSLKESHVS 10045427

10045426 QLPYLNACVKETLRLHPPVPFLIPRRALETCKVMDYTIPRDSEVIVNVWA 10045277

10045276 VGRDPSLWEDPLSFKPERFLGSDLDFKGQDFEFLPFGAGRRICPGLPMAA 10045127

10045126 KQVHLIIATLLYYFDWSLPNGEDPAMLDMSEKFGITLQKEQPLLVVPRRRI* 10044971

>CYP80D-se1[1]

LG_XII (-) 13112302-13111922

eugene3.00121151|Poptr1

no comment

76C like pseudogene

80% to LG_XII     (-) 13087099

$

13112302 SFFLLAILFLLSIVLKHKSSLAIPPWPNSWPIIGNELQMGNKPHIFLQVD 13112153

13112152 GPLTSLRLGTQLVVVGSSRKAASEILKTHDRELSGRCVPNVPFAKDPKLN 13112003

13112002 GDSIAWTVECTDRWKFFRSRIINELFL 13111922

>CYP80D1

LG_XII (-) 13100933-13099325

eugene3.00121149|Poptr1

gene model seems correct

76G like 41% to 76C2

97% to LG_XII     (-) 13087099

$

13100933 MVSISVLANSYPSFPMLFLLAILLLLSLVLKHKSSKVPAIPPGPKSWPII 13100784

13100783 GNVLQMGNKPHISLTKLAQVYGPLMSLRLGTQLVVVGSSREAASEILKTH 13100634

13100633 DRELSGRCVPHASFAKDPKLNEDSIAWTFECTDRWRFFRSLMRNELFSSK 13100484

13100483 VVDGQSRTRETKAREMIDFLKKKEGEGVKIRDIVFVYTFNVLANIYLSKD 13100334

13100333 LIDYDQTGECQRVCGLVREMMELHTTLNISDLYPILGSLDLQGVSRKCNE 13100184

13100183 CESRIQELWGSVIKERREGRNDTGDDDDNSSKRKDFLDVLLDGEFSDEQISLFFV 13100019 (0)

13099933 QELLAAVSDSTSSTVEWAMAELMRNPQAMKQLREELAGETPEDLITESSL 13099784

13099783 AKFPYLHLCVKETLRLHPPAPFLIPHRATEDCQVLDCTIPKDTQVLVNVW 13099634

13099633 AIARDPASWEDPLCFKPERFLNSDLDYKGNHFEFLPFGSGRRICAGLPMA 13099484

13099483 VKKVQLALANLIHGFDWSLPNNMLPDELNMDEKYGITLMKEQPLKLIPKLRK* 13099325

>CYP80D2

LG_XII (-) 13087162-13085557

eugene3.00121147|Poptr1

gene model seems correct

76G like 42% to 76C2

97% to LG_XII        (-) 13100870

$

13087162 MVSISVLANSYPSFPMLFLLAILLLLSLVLKHKSSKVPAIPPGPKSWPII 13087013

13087012 GNVLQMGNKPHISLTKLAQVYGPLMSLRLGTQLVVVGSSREAASEILKTH 13086863

13086862 DRELSGRCVPHASFAKDPKLNEDSIAWTFECTDRWRFFRSLMRNELFSSK 13086713

13086712 VVDGQSSTRETKAKEMIDFLKKKEGEGVKIRDIVFVYTFNVLANIYLSKD 13086563

13086562 LIDYDQTGECQRVCGLVREMMELHTTLNISDLYPILGSLDLQGLSRKTNE 13086413

13086412 CGSRIQELWRSIIKERREGRNDTGDDDNSSKRKDFLDVLLDGEFSDEQIS 13086263

13086262 SFFV 13086251 (0)

13086165 QELLAAVSDSSSSTIEWAMAELMRNPQAMKQLREELAGETPEDLITESSL 13086016

13086015 AKFPYLHLCVKETLRLHPPAPLLIPHRATEDCQVLDCTIPKDTQVLVNVW 13085866

13085865 AIARDPASWEDPLCFKPERFLNSDLDYKGNHFEFLPFGSGRRICAGLPMA 13085716

13085715 VKKVQLALANLIHGFDWSLPNNMLPDELDMAEKYGITLMKEQPLKLIPKLRK* 13085557

>CYP80E1

LG_I (+) 2171265-2172908

eugene3.00010276 [Poptr1:547835]

gene model correct

39% to 76C4

58% to LG_I       (+)  8156063

$

2171265 MATIVTEISSNTLFTILFLLPLIYLIAKQLKALYSSRFAPLPPGPYSWPI 2171414

2171415 LGNALQIGNSPHITLASLAKTYGPLFSLRLGSQLVIVAASQEAATEILKT 2171564

2171565 QDRFLSGRFVPDVIPAKWLKLENLSLGWIGEVNNEFKFLRTVCQSKLFSN 2171714

2171715 KALLSQSCLREKKAADTVRFIRTMEGKVLKIKKVAFAAVFSMLTNILISS 2171864

2171865 DLISMEQESTEGEMTEIIRNIFEVGAAPNISDLFPILAPFDLQNLRKKSK 2172014

2172015 ELYLRFSTMFEAIIEERRERKMSSDNASGKEDFLDTLISNGSSNEHINVLLL 2172170 (0)

2172303 ELLVAGSDTSTSAIEWAMAELLRNPQCMKKAQAELASEINQDLIQE 2172440

2172441 SDLPRLKFLHACLKESMRLHPPGPLLLPHRAVNSCKVMGYTIPKNSQVLV 2172590

2172591 NAYAIGRDPKSWKDPLDYKPERFLTSNMDFRGSNIEFIPFGAGRRACPGQ 2172740

2172741 PMATKHVPLVLASLLHFFDWSLPTGHDPKDIDMSDKFHTSLQKKQPLLLI 2172890

2172891 PKIKN* 2172908

>CYP80E2

LG_I (+) 8155946-8158046

estExt_fgenesh1_pg_v1.C_LG_I0934 [Poptr1:691155]

gene model seems correct

76G like  41% to   76G1

58% to LG_I       (+) 2172267

$

8155946 MAQTSLTQAIDLFSPILLLLPLLLLIVLKHFRHNSSPPFPPGPYPWPILG 8156095

8156096 NILQLGDKPHITLTHFAKIHGPIFSLRLGTQLVVVGSSQAAAIAILKTHD 8156245

8156246 RILSGRHVPHMAPSKSSELNKLSLGWVVECNERWRYLRTICKSELFSLKA 8156395

8156396 LESQACIRERKAKEMIGFINKMEGKVVKIREVATATVFNMLSNILVSRDL 8156545

8156546 VSLEHESEDGGMSSVLKDIARLASTPNISDFYPILGPLDLQGLRKKTMEL 8156695

8156696 HRRSFNMCEAIIQERREGGEGKRDGPDASRRRDFLDALILNGSSDDQIDILLM 8156854 (0)

8157432 ELLSAGTDTSSSTIEWTMAELIKNPRCLKKVQEEIANVINMNRDTG 8157569

8157570 FKESHLPQLTYLQACVKETLRLHPPGPFLLPHRAIDSCQVMNYTIPKNTQ 8157719

8157720 VLVNYWAIGRDPKSWEEPVVFNPERFLSSNLDFKGNDFEFIPFGSGRRIC 8157869

8157870 PGLPMAAKHVALIIAYLILFFDWSLPCGKNPTDLDMSENYGLTLRKEQPL 8158019

8158020 LLVPTSKK* 8158046

 

>CYP77A10

LG_VIII (-) 1164925-1163381

fgenesh1_pg.C_LG_VIII000203

gene model correct

no introns 72% to 77A4

$

1164925 MSLLSFSSATLDPYYHLFFTILALFISGLIFLLSRKPKSKRSHLPPGPPG 1164776

1164775 WPIVGNLFQVAQSGKPFFEYVDDIRSKYGSIFTLKMGTRTMIIISDAKLA 1164626

1164625 HEALIERGACFASRPKENPTRTIFSCNKFSVNAAVYGSVWRSLRRNMVQN 1164476

1164475 MLSSSRIKEFRNVRDSAMDTLINRLRTEAEANSGDVWVIKNVRFAVFCIL 1164326

1164325 LAMCFGIEMDDETIEKMDQVMKSVLIVLDPRIDDFLPILSPFFSKQRKRA 1164176

1164175 SEVRKAQVNFMVSFIEKRRNAIRNPGSDKSAMSFSYLDTLFDLTFE GRKS 1164026

1164025 TPSNEELVTLCSEFLNGGTDTTA TAVEWGIAQLIANPEVQTKLYNEIKST 1163876

1163875 VGDRKVDEKDVEKMEYLHAVVKELLRKHPPTYFVLSHAVTEPTTLAGYDI 1163726

1163725 PLDASVEFFSYGIGEDPKVWNNPEKFNPDRF ISDGEDADITGVTGVKMMP 1163576

1163575 FGVGRRI CPGLGLATVHLHLMIARMVQEFEWTA YPPNSKLDFSGKLEFTV 1163426

1163425 SMKNSLRAMIKPRV* 1163381

>CYP77A11P

LG_X (-) 210156073-21015481

eugene3.00102536|Poptr1

join with eugene3.00102535|Poptr1

pseudogene 64% to 77A10

$

21016073 KSSPSNEELVTLCSEFLNGGTDTTG 21015999

21015998 EIKSTAGDRKVDEKDVEK 21015945

21015827 DLPINANVEFYSHGTG*NTKV*TNPEKYNPDRFMSGREDADTTGVTGVKAMHFGVGRR 21015654

21015649 ICPGLWLATVHLHLMVAK 21015596

21015561 KLDISVKLEFTVVMKNSLSAMVKPRA* 21015481

>CYP77B3

LG_IV (-) 589294-587777

eugene3.00040066|Poptr1

no comment

68% to 77B1 71% to CYP77B4

$

589294 MDLIDLLILCIALMFARLWWRHWSVTGGGPRNLPPGPPGWPIVGNLFQII 589145

589144 LQRRPFIYVVRDLRAKYGPIFTLQMGQRTLVIVTSSELIHEALVQRGPTF 588995

588994 ASRPADSPIRLVFSVGKCAINSAEYGPLWRSLRKNFVTQFINPVRIKQCS 588845

588844 WVRECASENHMKRLKTEALENGFVEVMSNCRLTICSILICLCFGARISEE 588695

588694 RIKSIEAILKEVMLMTTPKLPDFLPILAPLFRKKMEEAKELRRKQMECLV 588545

588544 PLIRNRRAFVEKGENPDLEMASPVGAAYIDSLFAMKPVNRGPLGEQEFVT 588395

588394 LCSEVISAGTDTSATTIEWALLNLVQNQEIQEKLYQEIIGCVGKHGVVKE 588245

588244 EDTEKMPYLGAIVKETFRRHPPSHFVLSHAATNETQLAGYTIPADVNVEF 588095

588094 YTAWLTEDPDLWKDPGEFRPERFLEGDGVDVDMTGTRGVKMMPFGVGRRI 587945

587944 CPAWSLGVLHVNMLLARMVHAFKWLPCPTAPPDPTETFAFTVVMKNPLKA 587795

587794 VILPR* 587777

>CYP77B4

LG_IV (+) 605695-607218

fgenesh1_pm.C_LG_IV000021|Poptr1

gene model has wrong N-term

66% to 77B1 no introns 71% to CYP77B3

$

605695 MELIDLLILGLTLFFLAIWWRSFSVVNGGGAKNLPPGPPGWPLVGNLFQI 605844

605845 ILERRHFIFVIRDLRKKYGPIFSMQMGQSTLVIVTSPDLIHEALVQKGPI 605994

605995 FASRPPDSPIRLVFSVGKCAVNSAEYGPLWRTLRRNFVTELISPVRIRQC 606144

606145 SWIREWALESHMKRLKSEALENGYVDVMDVCRFTVCSILVFICFGAKISE 606294

606295 HWIHDIDNVTKDVMLISIPQLPDFLPILTPLFRKQMKRAKDLRKTQIECL 606444

606445 VPLIRNRRAFVEKGENPKMEMLSPVGAAYVDSLFTLKAPGRGLLGEEELV 606594

606595 TVCSELFVAGIDTSTSVLQWVFLELVLNQDIQEKLYREIVESVGKDGVIN 606744

606745 EEDVEKMNYLNAVVKETLRVHSPAHFTLSHATTEETELGGYKIPSNVNVE 606894

606895 FYIEWMTEDPSLWKDPGIFRPERFIDGDGVNVDMTGTKGKVKMLPFGAGR 607044

607045 RTCPGLALGLLHVNLMLARMVQAFKWLPAPNAPPDPTEAFAFTVVMKNPL 607194

607195 KAVILPR* 607218

 

>CYP78A18

LG_Vb (-) 1989840-1988143

estExt_fgenesh1_pg_v1.C_LG_V0235|Poptr1

gene model seems correct

78A like 70% to 78A7

$

1989840 MEIDLATKDTSWWVYTLPAFLGSEILIDGYVLFSLVMAFVTLGILTWAFA 1989691

1989690 VGGVAWKNGRNRRGHRLIPGPRGLPVFGSLLTLCRGLAHRTLASMACSRD 1989541

1989540 NTQLMAFSLGSTPVVVASDPHTAREILTSIHFADRPIKLSAKSLMFSRAI 1989391

1989390 GFAPSGTYWRLLRRIASGHLFSPRRISAHESLRQLECSTMLRDMTNEQEL 1989241

1989240 NGFVSLRKHLQFASLNNIMGSVFGKRYDMVHDSQDLEELRGMVREGFELL 1989091

1989090 GAFNWCDYLPWLSYFYDPFRINERCLKLVPRVRKLVKGIIEEHRISKSRN 1988941

1988940 VGDSCDFVDVLLSLDGEEKLQDDDMVAVLW 1988851 (0)

1988754 EMIFRGTDTTALLTEWVMAELVLHPEIQEKLHSELDMAVKD 1988632

1988631 GSLAALTDADVEKLPYLQAVVKETLRVHPPGPLLSWARLSTSDVQLNNGM 1988482

1988481 VIPANTTAMVNMWAITHDPNVWEDPLEFKPERFIEADVDVRGNDLRLAPF 1988332

1988331 GAGRRVCPGKKLGLVTVTLWVAKLVHCFKWNRDVDHPVDLSEVLKLSCEM 1988182

1988181 KYPLHAVAVGRK* 1988143

>CYP78A19

LG_Va (-) 13684462-13682757  

fgenesh1_pm.C_LG_V000403|Poptr1

gene model correct

78A like 68% to 78A7

$

13684462 MDLFPTPVDSSWWMFALPAMLQIQKLSNPLILLFVLASFLVITVLNWAFS 13684313

13684312 TGGLAWKNGRNQKGNVPIPGPRGLPLFGSLFSLSRGLAHRTLACMASSQA 13684163

13684162 ATQLMAFSLGSTPAIVTSDPQIAREILTSPHFADRPIKLSAKSIMFSRAI 13684013

13684012 GFAPNGAYWRLLRRIASNHLFAPRRIAAYEPWRQLDCANMLSGIYNEQSL 13683863

13683862 RGIVCLRKHLQNASINNIMGTVFGKRYDLMHNNEEAKELQELVREGFELL 13683713

13683712 GAFNWSDYLPWLNYFYDPSRIKQRCCLLVPRVKKLVKKIIDEHRIMKPKN 13683563

13683562 EFQNADFVHVLLSLEGEEKLDEDDMVAVLW 13683473 (0)

13683371 EMIFRGTDTTALLTEWIMAELVLNPEIQAKLRNELNFIVGNRSV 13683240

13683239 KDADVAKLPYLQAVIKETLRVHPPGPLLSWARLSTSDVHLSNGMVVPTNT 13683090

13683089 TAMVNMWAITHDPRVWEDALVFKPERFLERQGGADVDVRGGDLRLAPFGA 13682940

13682939 GRRVCPGKNIGLVTVSLWVAKLVHHFEWVQDTHNPVDLSEVLRLSCEMKK 13682790

13682789 PLSAVAIPKE* 13682757

>CYP78A20

LG_II (+)  4123900-4125604

fgenesh1_pg.C_LG_II000566 [Poptr1:347060]

gene model correct

78A like 67% to 78A7

$

4123900 MELVPSSVDSSWWMFALPAMLQTENLSNPLILLFVLISFLVITLLTWAFS 4124049

4124050 TGGLAWKNGRNHKGSVSIPGPRGLPFFGSLFSLSRGLAHRTLACMASSQA 4124199

4124200 ATQLMAFSLGSTPAIVTSDPQIAREILTSPHFADRPIKLSAKSLMFSRAI 4124349

4124350 GFAPNGAYWRLMRRIASTHLFAPRRIAAHEPWRQLDCAKMLSGIYDDQSL 4124499

4124500 HGVVYLRKHLQDASLNNIMGTVFGKRYDLMQFNEEAKELQELVIEGFELL 4124649

4124650 GAFNWSDYLPWLNYFYDPFRIKERCCQLVPRVKKLVKQIIEEHRIKKPKN 4124799

4124800 VFDNADFVDVLLSLEGEEKLEEDDMVAVLW 4124889 (0)

4124990 EMIFRGTDTTALLTEWVMAELVLNQEIQAKLGKELNLVVGNRSVTDADVA 4125139

4125140 DLPYLQAVIKETLRVHPPGPLLSWARLSTSDVHLSNGMVVPVNTTAMVNM 4125289

4125290 WAITHDPRVWEDALVFKPERFMESQGGADVDVRGGDLRLAPFGAGRRVCP 4125439

4125440 GKNLGLVTVSLWVAKLVHHFEWVQDMHSPVDLSEMLKLSCEMKKPLSAVA 4125589

4125590 IPRN* 4125604

>CYP78A21v1

LG_VII (-) 5114877-5113187

eugene3.00070646|Poptr1

gene model correct

78A like 69% to 78A7

$

5114877 MELDLVTKDTSWWVFTLPAFLGSKSLLDGFILFSLSMAFVSLAFLTWAFA 5114728

5114727 VGGIAWKNGRNRKGHRSIPGPRGLPIFGSLFTLSRGLAHRTLASMAWRRA 5114578

5114577 NTQLMAFSLGSTPVVVASDPHIAREILTSPYFADRPIKQSAKSLMFSRAI 5114428

5114427 GFAPSGAYWRLLRRIASTHLFSPRRILAHESLRQLESTTMLRNITNEQRR 5114278

5114277 NGFVTLRKHLQFASLNNIMGSVFGKTYDMSQDRQELEELRDMVSEGFELL 5114128

5114127 GAFNWCDYLTWLNYFYDPFRIQKRCSKLVPRVRKLVKDIIEEHRLGEPGK 5113978

5113977 VGDDGDFVDVLLSLEGEEKLQDDDMVAVLW 5113888 (0)

5113801 EMIFRGTDTTALLTEWVMAELVLHTEVQEKLRRELDMAVKDRSLSELT 5113658

5113657 DSEVSKLPYLQAVVKEALRVHPPGPLLSWARLCSSDVQLSNGMVIPADTT 5113508

5113507 AMVNMWAITHDPHVWEDPLEFKPERFIE 5113424

5113423 ADVDVRGGDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKW 5113289

5113288 VHDGEHPVDLSEVLKLSCEMKYPLHAVALQMNN* 5113187

>CYP78A21v2

scaffold_2390 (-) 7318-5629

eugene3.23900001|Poptr1

gene model missing some seq before the PERF motif

78A like 69% to 78A7

$

7318 MELDLVTKDTSWWVFTLPAFLGSKSLLDGFILFSLSMAFVSLAFLTWAFA 7169

7168 VGGIAWKNGRNRKGHRSIPGPRGLPIFGSLFTLSRGLAHRTLASMAWRRA 7019

7018 NTQLMAFSLGSTPVVVASDPHIAREILTSPYFADRPIKQSAKSLMFSRAI 6869

6868 GFAPSGAYWRLLRRIASTHLFSPRRILAHESLRQLESTTMLRNITNEQRR 6719

6718 NGFVTLRKHLQFASLNNIMGSVFGKTYDMSQDRQELEELRDMVSEGFELL 6569

6568 GAFNWCDYLTWLNYFYDPFRIQKRCSKLVPRVRKLVKDIIEEHRLGEPGK 6419

6418 VGDDGDFVDVLLSLEGEEKLQDDDMVAVLW 6329 (0)

6242 EMIFRGTDTTALLTEWVMAELVLHTEVQEKLRRELDMAVKDRSLSELT 6099

6098 DSEVSKLPYLQAVVKEALRVHPPGPLLSXARLCSSDVQLSNGMVIPADTTAMV 5940

5940 HMWAITHDPHVWEDPLEFKPERFIE 5866

5865 ADVDVRGGDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKW 5731

5730 VHDGEHPVDLSEVLKLSCEMKYPLHAVALQMNN* 5629

>CYP78A2

LG_Ib (+) 6124306-6126694

eugene3.00010701 [Poptr1:548260]

gene model correct

68% to  78A9

$

6124306 METQIDSFWVLVLVSKCKAFSAQNPIFLLVSVFLAWLAMALCYWVYPGGPAWGNYLRKK 6124482

6124483 GISCSRAKMIPGPRGFPVIGSMNLMVNLAHHKLAAAAKAFKAERLMAFS 6124629

6124630 LGETKVIITCNPDVAKEILNSSVFADRPVKESAYQLMFNRAIGFAPYGVY 6124779

6124780 WRTLRRIAATHLFCPKQISSTESQRFNIASQMVSAIASQGGDYFCVRGIL 6124929

6124930 KKASLNNMMCSVFGRKYDLGSSNSETEELRRLVDEGYDLLGKLNWSDHLP 6125079

6125080 WLANLDLQRIRFRCSNLVPKVNRFVNRVIEEHREDQTGQRRNDFVDVLLS 6125229

6125230 LHGPDKLSHHDMIAVLW 6125280 (0)

6126071 EMIFRGTDTVAVLIEWILARMVLHRDIQSKVHDELDQVVGRSRP 6126202

6126203 LMEADIQSMVYLPAVVKEVLRLHPPGPLLSWARLAITDTNVDGYDVPAGT 6126352

6126353 TAMVNMWAITRDPQVWANPLRFLPERFLCKDATADVEFSVSGSDLKLAPF 6126502

6126503 GSGRRTCPGKALGLATVSFWVGVLLHEFEWVQCDHEPVDLSEVLRLSCEM 6126652

6126653 SNPLTIKVNPRRR* 6126694

>CYP78A23

LG_IIIb (-) 13439255-13437042

eugene3.00031195|Poptr1

gene model correct

78A like 68% to 78A9

$

13439255 METQIDSFWVLALVSKCKAFSSQDPIFLLLSLFLAWLAIALCYWVYPGGP 13439106

13439105 AWGKYWLKRATCSKAKMIPGPRGFPVIGSMNLMVNLAHHKLAAAAKTLKA 13438956

13438955 KRLMAFSMGETRVIITCNPDVAKDILNSSVFADRPVKESAYQLMFNRAIG 13438806

13438805 FAPYGVYWRTLRRIAATHLLCPKQISSTEPQRLDIASQMVSVMACQGGDY 13438656

13438655 FRVRDILRKASLNNMMCSVFGRKYDLGTSNNEIEELGGLVDEGYDLLGKL 13438506

13438505 NWSDHLPWLANFDLQKIRFRCSNLVPKVNRFVNRVIQEHREDQSGQRRND 13438356

13438355 FVDVLLSLHGPDKLSDHDMVAVLW 13438284 (0)

13437665 EMIFRGTDTVAVLIEWILARMILHPDIQSKVHDELDQVAGRSRPLME 13437525

13437524 ADIRSMVYLPAVVKEVLRLHPPGPLLSWARLAITDTDVDGYDVPAGTTAM 13437375

13437374 VNMWAITRDPQVWVDPLKFSPERFLSKEVTADVEFSVSGSDLRLAPFGSG 13437225

13437224 RRTCPGRTLGLATVSFWVGSLLHEFEWARCGHEPVDLSEVLRLSCEMAKP 13437075

13437074 LTVKVNPRRR* 13437042

>CYP78A24

LG_IIc (+) 13511138-13512986

eugene3.00021624 [Poptr1:552309]

gene model seems correct

78A like 72% to 78A9

$

13511138 MRTDIDNFWIFALASKCRVFTQENIAWSLLIMGLAWIATTLIYWAYPGGP 13511287

13511288 AWGKYKLKNTSFTISKPIPGPRGLPLIGGMRLMTSLAHHKIAAAADACKA 13511437

13511438 RRLMAFSLGDTRVIVTCNPDVAKEILNSSVFADRPVKESAYSLMFNRAIG 13511587

13511588 FAPYGVYWRTLRKIASTHLFCPKQIKTAASQRRRIASETVSMFNDHEGSG 13511737

13511738 FTVRGILKRASLNNMMCSVFGREYELDSCNSEVEELRALVDEGYDLLGTL 13511887

13511888 NWTDHLPWLADFDPQKIRFRCSNLVPKVNRFVSRILAEHR 13512007

13512008 AQAGNETPDFVDVLLSLQGHDKLSDSDMIAVLW 13512106 (0)

13512321 EMIFRGTDTVAVLMEWILARMVLHPDVLSKVHDELDKVVGRSRAVAESDI 13512470

13512471 TAMVYLQAAVKEVLRLHPPGPLLSWARLAITDTTIDGYHVPKGTTAMVNM 13512620

13512621 WAISRDPDSWEDPLEFMPERFVTKKG 13512698

13512699 ELEFSVLGSDLRLAPFGSGRRTCPGKTLGLTTVTFWVASLLHEYEWLPCD 13512848

13512849 GNKVDLSEVLGLSCEMANPLTVKLRPRR 13512932

13512933 SHYKPTVLGVQNYVLDV* 13512986

>CYP78A25

LG_XIV (-)  3837010-3835172

estExt_fgenesh1_pg_v1.C_LG_XIV0445|Poptr1

gene model seems correct

78A like 72% to 78A9

$

3837010 MRTDIDSFWIFALASKCRAFTQENIAWSLLIIGLAWIVVTLIYWAYPGGP 3836861

3836860 AWGKYKLKNTSLTISNPIPGPRGFPITGSMKLMTSLAHHKIAAAADACKA 3836711

3836710 RRLMAFSLGDTRVIVTCNPDVAKEILNSSVFADRPVKESAYSLMFNRAIG 3836561

3836560 FAPYGVYWRTLRKIASTHLFCPKQIKAAESQRLQIASQMVSTFNDREKSS 3836411

3836410 FSVREVLKRASLNNMMCSVFGREYKLDSFNNEVEELRALVEEGYDLLGTL 3836261

3836260 NWSDHLPWLADFDPQKIRFRCSNLVPKVNRFVSRIIAEHRALTRSENPDF 3836111

3836110 VDVLLSLQGHDKLSDSDMIAVLW 3836042 (0)

3835810 EMIFRGTDTVAVLIEWILARMVLHPDVQSKVHDELYKVVGRSRAVAESDI 3835661

3835660 TAMVYLQAVVKEVLRLHPPGPLLSWARLAITDTTIDGYHVPKGTTAMVNM 3835511

3835510 WAISRDPEFWEDPLEFMPERFVVTKEDVLEFSVLGSDLRLAPFGSGRRTC 3835361

3835360 PGKTLGITTVTFWVASLLHEYEWVPGEENNVDLSEVLRLSCEMANPLTVK 3835211

3835210 VRPRRSSQSPLY* 3835172

>CYP78A26P

scaffold_3645 (-) 4941-3651

eugene3.36450001|Poptr1

no comment

78A like PSEUDOGENE 64% to 78A10

$

4941 FLSKLGPSTGPGLELILGIVLFVFIFSFWLAPGGLAWDLSKTRTTIPGPS 4792

4791 GWPILGMVLAFTGSLTHRVLARISELLKAKPLMVFSVGFPRFIISSHPETAKEILNSSAFA 4609

4607 IKESAYELLFHKAMGFAHFGDCWRNLRRISATHLFSPNKRIAALGEFIRD 4458

4457 IGLKMVSEIKSLAERNGEVLEIRKVLHFGSLDNVMKRVFGRSYEFGDESK 4308

4307 VGVCELEGLVSERYELLGIFNWSDHF 4230

4231 FPILGWLDLQGVRKRCRNLAAKVNVFVEKIIDEHKMKRVESDKNEDIIKS 4082

4081 DESSSDFVDVLLDLQKENKL 4022

4019 CSDMIAVLW 3993

3870 EMIFR 3856

3854 GTDTVAILLEWILARMVLHPVIQAKVQAEIDNVVGSSRSVSDFVLPNLPY 3705

3704 LRAVVRETLRVLPPGPLL 3651

>CYP78D2

LG_IIIa (+) 15447061-15449577

fgenesh1_pg.C_LG_III001462|Poptr1

gene model short at N-term

78A like 50% to 78A5

$

15447061 MKSIPANLSSILFCLAVITHQTPWPVALLLFSLSSFFAFSLNYWLVPGGFAW 15447216

15447217 RNHHDNQNPSRFRGPIGWPIVGTLPQMGSLAHRKLASMAASLGATKLMAF 15447366

15447367 SLGSTRVIISSHPDTAREILCGCSFADRPIKESARLLMFERAIGFAPSGD 15447516

15447517 YWRHLRRIAANYMFSPRKISALEPLRQRLANEMVAEVREEMKERRVVVLR 15447666

15447667 DILQKGSLSNVLESVFGSDVSIEREELGFMVKEGFDLIAEFNLDDYFPLR 15447816

15447817 FLDFHGVKRRCCQLAGKVNSVVGQIVKERKGAGDSRSGSDFLSALLSLPE 15447966

15447967 EDQLNESDMVALLW 15448008 (0)

15448966 EMIFRGTDTVALLLEWIMARMVVHPEIQAKAQEELDTCIGGHREVQDSDI 15449115

15449116 PNLPYLRAIVKEVLRLHPPGPLLSWARLAIHDVHVDKTFIPAGTTVMVNM 15449265

15449266 WAITHDPSIWRDPWSFNPDRFIEEDVLIMGSDLRLAPFGAGRRVCPGKAL 15449415

15449416 GLATVHLWLARLLHEYRWLPAKPVDLSECLRLSLEMKRPLECHVVQRRSKVTQ* 15449577

>CYP78D3v1

LG_Ia (-)  3924905-3921817

fgenesh1_pg.C_LG_I000468 [Poptr1:63116]

gene model correct

51% to 78A5

$

3924905 MMSLLANLSFLLFFLAIITHQTPWPITVLLLSLFSS FALSLNYWLVPGGFA 3924753

3924752 WRNHHDNQNPSKFRGPIGWPVFGTLPQMGSLAHRKLASMATSLGATKLMA 3924603

3924602 FSLGTTRVIISSHPDTAREILWGSSFADRPVKESARLLMFERAIGFAPSG 3924453

3924452 DYWRHLRRIAANHMFSPKKISGLEPLRQRLANEMLAEVSGEMKERRAVVL 3924303

3924302 RGILQKSSLSNVLESVLGSDVHVKREELGFMAQEGFDLVSRFNLEDYFPL 3924153

3924152 RFLDFYGVKRRCYKLAGKVNSLVGQIVRERKRAGDFRSRTDFLSALLSLP 3924003

3924002 EQERLDESDMVPLLW 3923958 (0)

3922440 EMIFRGTDTVAILLEWIMARMVLHPEIQAKAQQELEKFIGNHRRVQDSDI 3922291

3922290 PNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKMSIPAGTTAMVNM 3922141

3922140 WAITHDPSIWRDPWAFNPDRFMEEDVLIMGSDLRLAPFGSGRRVCPGKAL 3921991

3921990 GLATVHLWLARLLHEYKWLPAKPVDLSECLRLSLEMKRPLECHVVPWSKV 3921841

3921840 ADFDQKT* 3921817

>CYP78D3v2

scaffold_1387 (-) 6082-5135

estExt_Genewise1_v1.C_13870002|Poptr1

runs off end in intron seq

78A like 1 aa diff to LG_I 3922062

probable duplicate seq of LG_I 3922062

$

6082 MMSLLANLSFLLFFLAIITHQTPWPITVLLLSLFSSFALSINYWLVPGGFA 5930

5929 WRNHHDNQNPSKFRGPIGWPVFGTLPQMGSLAHRKLASMATSLGATKLMA 5780

5779 FSLGTTRVIISSHPDTAREILWGSSFADRPVKESARLLMFERAIGFAPSG 5630

5629 DYWRHLRRIAANHMFSPKKISGLEPLRQRLANEMLAEVSGEMKERRAVVL 5480

5479 RGILQKSSLSNVLESVLGSDVHVKREELGFMAQEGFDLVSRFNLEDYFPL 5330

5329 RFLDFYGVKRRCYKLAGKVNSLVGQIVRERKRAGDFRSRTDFLSALLSLP 5180

5179 EQERLDESDMVPLLW 5135 (0)

>CYP78D-se1[2]

LG_IX (+) 340405-340566

No model

no comment

CYP78 like pseudogene

69% to LG_I (-)  3924905

$

340405 PLLSWGRLAFHDTQVGPHVIPAGITAMVNMWSITHDERIWSDKNSISTARIYNQ 340566

 

>CYP79D5

LG_XIII (+) 12617173-12619030

eugene3.00131268|Poptr1

gene model seems correct

79D like 58% to 79D1

$

12617173 MEYLSATSFTALLSFPTSLLVLAIILFYFIQSHRNVKKHPLPPGPKPWPI 12617322

12617323 VGCLPTMLRNKPVYRWIHNLMKEMNTEIACIRLGNVLVIPVICPDIACEF 12617472

12617473 LKAQDNTFASRPNTMTTDLISRGYLATILSPSGDQWNKMKKVLMTHVLSP 12617622

12617623 KKHQWLYSKRVEEADHLVHYVYNQCKKSVHQGGIVNLRTAARHYCANVTR 12617772

12617773 KMLFNKRFFGEGMKDGGPGFEEEEYMDALFSCLKHIYAFCISDFLPSLIG 12617922

12617923 LDLDGHEKVVMENHRIINKYHDPIIHERVQQWKDGAKKDTEDLLDILITL 12618072

12618073 KDRNGNPLLSKDEIKAQIT 12618129 (0)

12618407 EIMVAAVDNPSNACEWAFAEMLNQPEILEKATEELDRVVGKERLVQES 12618550

12618551 DFAHLNYVKACAREAFRLHPFAPFNVPHVSAADTTVANYFIPKGSYVLLS 12618700

12618701 RLGLGRNPKVWDEPLKFKPERHLNEMEKVVLTENNLRFISFSTGKRGCKG 12618850

12618851 VTLGTSMTTMLFARLLQAFTWSLPPRQSSIDLTIAEDSMALAKPLCALAK 12619000

12619001 PRLRPQVYPGY* 12619036

>CYP79D6v1

LG_XIII (+) 12759202-12761058

fgenesh1_pg.C_LG_XIII001242|Poptr1

gene model seems correct

79B like 57% to 79D1 95% to 79D5

$

12759202 MEYLAPTSFTTLLSFTASLLVLAIILFYFIQSHKNVKKHPLPPGPKRWPV 12759351

12759352 VGCLPTMLRNKPVYRWIHNLMKEMNTEIACIRLGNVHVIPVICPDIACEF 12759501

12759502 LKAQDNTFASRPHTMTTDLISRGYLTTALSPSGDQWNKMKKVLMTHVLSP 12759651

12759652 KKHQWLYSKRVEEADHLVHYVYNQCKKSVHQGGIVNLRTAAQHYCANLTR 12759801

12759802 KMLFNKRFFGEGMKDGGPGFEEEEYVDALFSCLNHIYAFCISDFLPSLIG 12759951

12759952 LDLDGHEKVVMENHRIINKYHDPIIHERVQQWKDGAKKDTEDLLDILITL 12760101

12760102 KDRHGNPLLSKDEIKAQIT 12760158 (0)

12760435 EIMVAAVDNPSNACEWAFAEMLNQPEILEKASEELDRVVGKERLVQES 12760578

12760579 DFAHLNYVKACAREAFRLHPVAPFNVPHVSAADTTVANYFIPKGSYVLLS 12760728

12760729 RLGLGRNPKVWDEPLKFKPERHLNEMEKVVLTENNLRFISFSTGKRGCIG 12760878

12760879 VTLGTSMTTMLFARLLQAFTWSLPPSQSSIDLTIAEDSMALAKPLCALAK 12761028

12761029 PRLPPQVYPGY* 12761064

>CYP79D6v2

scaffold_1585 (-) 9137-7275

eugene3.15850001|Poptr1

gene model seems correct

only 2aa diffs to 79D6 possible duplicate

79B like 58% to 79D1 95% to 79D5

$

9137 MEYLAPTSFTTLLSFTASLLVLAIILFYFIQSHKNVKKHPLPPGPKRWPV 8988

8987 VGCLPTMLRNKPVYRWIHNLMKEMNTEIACIRLGNVHVIPVICPDIACEF 8838

8837 LKAQDNTFASRPHTMTTDLISRGYLTTALSPSGDQWNKMKKVLMTHVLSP 8688

8687 KKHQWLYSKRVEEADHLVHYVYNQCKKSVHQGGIVNLRTAAQHYCANLTR 8538

8537 KMLFNKRFFGEGMKDGGPGFEEEEYVDALFSCLNHIYAFCISDFLPSLIG 8388

8387 LDLDGHEKVVMENHRIINKYHDPIIHERVQQWKDGAKKDTEDLLDILITL 8238

8237 KDRHGNPLLSKDEIKAQIT 8181 (0)

7904 EIMVAAVDNPSNACEWAFAEMLNQPEILEKATEELDRVVGKERLVQES 7761

7760 DFAHLNYVKACAREAFRLHPVAPFNVPHVSAADTTVANYFIPKGSYVLLS 7611

7610 RLGLGRNPKVWDEPLKFKPERHLNEMEKVVLTENNLRFISFSTGKRGCIG 7461

7460 VTLGTSMTTMLFARLLQAFTWSLPPSQSSIDLTIAEDSMALAKPLSALAK 7311

7310 PRLPPQVYPGY* 7275

>CYP79D7

LG_XIII (+) 12783206-12785069

eugene3.00131275|Poptr1

gene model seems correct

only 5aa diffs to 79D5, seems odd

79B like 58% to 79D1, 99% to 79D5

$

12783206 MEYLSATSFTALLSFPTSLLVLAIILFYFIQSHRNVKKHPLPPGPKPWPI 12783355

12783356 VGCLPTMLRNKPVYRWIHNLMKEMNTEIACIRLGNVLVIPVICPDIACEF 12783505

12783506 LKAQDNTFASRPNTMTTDLISRGYLATILSPSGDQWNKMKKVLMTHVLSP 12783655

12783656 KKHQWLYSKRVEEADHLVHYVYNQCKKSVHQGGIVNLRTAARHYCANVTR 12783805

12783806 KMLFNKRFFGEGMKDGGPGFEEEEYVDALFSCLNHIYAFCISDFLPSLIG 12783955

12783956 LDLDGHEKVVMENHRIINKYHDPIIHERVQQWKDGAKKDTEDLLDILITL 12784105

12784106 KDRNGNPLLSKDEIKAQIT 12784162 (0)

12784440 EIMVAAVDNPSNACEWAFAEMLNQPEILEKATEELDRVVGKERLVQES 12784583

12784584 DFAHLNYVKACAREAFRLHPLAPFNVPHVSAADTTVANYFIPKGSYVLLS 12784733

12784734 RLGLGRNPKVWDEPLKFKPERHLNEMEKVVLTENNLRFISFSTGKRGCIG 12784883

12784884 VTLGTSMTTMLFARLLQAFTWSLPPRQSSIDLTIAEDSMALAKPLCALAK 12785033

12785034 PRLPPQVYPGY* 12785069

>CYP79D8

LG_IV (+) 3871814-3873941

eugene3.00040407|Poptr1

gene model seems correct

79A like 56% to 79D1 73% to 79D5

$

3871814 MDYFPSTSSFIILLSFPILFLVLAITLFSFIQSSKNVKQYSLPPGPRPWPLVGSL 3871978

3871979 PTMLRNKPVYQWIHNLMKEMNTEIACIRLGNIHVIPVTCPNIACEFLKEQ 3872128

3872129 DDVFSSRPETISSYLASNGYLATVVSPFGDQWKKMKSVMATQVLSPTRHQ 3872278

3872279 WLHKKRVEEGDNLVRLVYKQCQESD 3872353

3872354 QDGIVNLRFTSQHYCANVIRKLMFNKRYFGVGMENGGPGFEEEQHVDALF 3872503

3872504 TILSHLFSFCVSDFLSFLTWLDLDGHEKVMKEKDKIIKKYHDPIIDDRIQ 3872653

3872654 QWKDGKKKDIEDLLDVLITLKDDNGNPLLSKDEIKAQVE 3872770

3873315 DIILAAVDNPSNACEWAFAEMLNNPEILETAVEELDRVVGKQRLVQESDF 3873464

3873465 AQLNYVKACAREAFRLHPVAPFNVPHVSMADTVVAKHFIPKGSYVILSRL 3873614

3873615 GLGRNPKVWDEPLEFKPERHLKGTGNVVLAENGLRFISFSTGKRGCMAVT 3873764

3873765 LGSSMTNMLFARLLHGFSWSLPSNESSIDLSTAKDSMALAKPLLAVAKPR 3873914

3873915 LPAHLYPK* 3873941

>CYP79D9P

LG_II (-) 16041237-16040849

fgenesh1_pg.C_LG_II001846|Poptr1

no comment

79D like 78% to 79D8

$

16041237 DIILATVDNPSNACEWAFAEVLNSPGILKMFVEELDRVVGKQQLVQESD 16041091

16041090 SALLNYVEVCAREAFRLHPVAPLNIPRVSMADTVVSNHFIPRGSYAILSRLG 16040935

16040935 DLKVWDEPLRFKPECHLTRTGHVVLAENG 16040849

 

>CYP81B3v1

LG_IIc (-) 9154259-9152268

fgenesh1_pg.C_LG_II001121 [Poptr1:347615]

gene model short in middle, one frameshift

81D like 47% to 81D8

59% to LG_II        (-)  9149602

$

9154259 MEISFYSCFMLFLMFYFLSKHLCKISKNLPPSPGLSLPIIGHLYLIKKPLHQTLANLSNKYGPILFI 9154059

9154058 QFGSRPVILVSSPSVAEECLSKNDIIFANRPRLLAGKHLGYNYTTLTWASYGNHWRNLRRIAALEI 9153861

9153860 LSTNRLKMFYHIRADEVRLLVHKLFKGCRGGEFMSIDAKSTFFDLTLNVITRMIAGKRYYGEDLAEL 9153660

9153659 GEARQFKEIVRETFELSGATNIGDFVPALKWIGLNNIEKRLAILHRKRDEFVQDLILEHRKVKSEFA 9153459

9153458 SHQGSSKTMINVLLTLQETEPEYYTDEIIRGLMT 9153357 (0)

9152886 VILSAGTDTSAGTMEWALSLLLNNPQALMKAQIEIDTIIGPS 9152760

9152759 KLIEESDLLKLPYLQGIIKETLRMYPP 9152680

9152678 PHLPPHESSEECTVGGFRVPRGTMLLVNMRSVHNDPNLWE 9152559

9152558 EPTKFKPERFHGPEGKRDGFIYLPFGAGRRGCPGEGLATRIIGLALGSLIQCFEWERVCGELVDMS 9152361

9152360 EGTGLTMPKAQNLWAKCRPRPAMVNQLSQT* 9152268

>CYP81B3v2

scaffold_1047 (+) 16009-16578

no model

no comment

81D like  46% to 81D6 N-term no model at JGI

100% to LG_II       (-)  9152501 duplicate seq

$

16009 MEISFYSCFMLFLMFYFLSKHLCKISKNLPPSPGLSLPIIGHLYLIKKPL 16158

16159 HQTLANLSNKYGPILFIQFGSRPVILVSSPSVAEECLSKNDIIFANRPRL 16308

16309 LAGKHLGYNYTTLTWASYGNHWRNLRRIAALEILSTNRLKMFYHIRADEV 16458

16459 RLLVHKLFKGCRGGEFMSIDAKSTFFDLTLNVITRM 16566

>CYP81B4

LG_IId (-) 9151207-9149369

fgenesh1_pm.C_LG_II000512 [Poptr1:342582]

gene model seems correct

81D like 49% to 81D2

95% to scaffold_1047  (+)     5087

$

9151207 MFLHFLLLYLVLYVLTNHFRNKIQNLPPSPFPALPIIGHLHLLKKPLHRS 9151058

9151057 LSKISNRHGPVVLLQLGSRRVLVVSSPSAAEECFTKNDIVFANRPHLLAG 9150908

9150907 KHLGRNYTTLSWAPHGDLWRNLRKISSLEILSSNRLQLFSSIRTEEVKFL 9150758

9150757 IRRLFKNNDEIIDLKSSFFELMLNVMMRMIAGKRYYGENEAEVEEGRRFR 9150608

9150607 EIVTETFQVSGASAVGDFLHVLAVIGGTEKRLMKLQEKRDGFLQELVDEH 9150458

9150457 RRRMGNNKSCFSNERNYKTMIEVLLTLQESEPEYYKDETIKDLMV 9150323 (0)

9149989 VLLSAGTETTAGTMEWALSLLLNNPLILRKAQNEIDKVVGHDRLIDE 9149849

9149848 SDVVKLPYLHCVIKETMRMYPIGPLLVPHRSSEECGVGGFQIPSGTMLLV 9149699

9149698 NMWAIQNDPKIWDDAAKFKPERFEGSVGVRDGFKLMPFGSGRRRCPGEGL 9149549

9149548 AIRMVGLTLGSLLQCFEWDRVSQEMVDMTGGTGLTMPKAQPLLARCTSRP 9149399

9149398 SMANLLSQI* 9149369

>CYP81B5

LG_IIb (-) 9145798-9143865

eugene3.00021123 [Poptr1:551808]

gene model short on N-term

81D like 50% to 81D8

78% to LG_XIV      (-)   929000

$

9145798 MATLFLYFPFFLALYMITRHLLDKIQNLPPSPFLSLPIIGHLYLFKKPIY 9145649

9145648 RTLSNISNRYGQLVVLLRLGSRRVLVVSSPSIAEECFTKNDVVFANRPRL 9145499

9145498 LIGKHLGYNCTNLFWASYGDHWRNLRKIVSIEVLSAYRLQMHSATHLEEV 9145349

9145348 KWMIGWLFRNQNQVVDMKKAFLELTLNIIMRMIAGKRYYGDDVSDVEQAQ 9145199

9145198 RFRAIHAEMYTLIGQTIIGDYVPWIKSKKMEKRLIECRVKRDSFMQCLIE 9145049

9145048 EQRRVLLESDCCGERKRTMIQVLLSLQETEPEYYTDDIIKGLML 9144914 (0)

9144482 VLLFAGTDTSSSIMEWALSLLLNHSEVLLKAQKEIDEYIGPDRLIDEADL 9144333

9144332 AQLPYLRSIINETLRMYPPAPLLVPHESSEECLVGGFRIPHGTMLFVNMW 9144183

9144182 AIHNDPKIWLDPRKFRPDRFNGLEGARDGFRLMPFGYGRRSCPGEGLALR 9144033

9144032 MVGLALGSLIQCFEWQRIDDKSVDMTERPGFTMAKAQPLKAICRPRLSMLKLFSQ* 9143865

>CYP81B6

scaffold_1047 (+) 3473-5320

eugene3.10470001|Poptr1

gene model seems correct

81D like 51% to 81D3

95% to LG_II        (-)  9149602

$

3473 MFLHFLLLYLVLYVLTNHFRNKIQNLPPSPFPALPIIGHLHLLKKPLHRS 3622

3623 LSKISNRHGPVVLLQLGSRRVLVVSSPSAAEECFTKNDIVFANRPHLLAG 3772

3773 KHLGRNYTTLPWAPHGDLWRNLRKISSLEILSSNRLQLLSSIRTEEVKLL 3922

3923 IRRLFKNNDQIIDLKSSFFELMLNVMMRMIAGKRYYGENEAEVEEGRRFR 4072

4073 EIVTETFQVSGASAVGDFLHVLAVIGGTEKRFMKLQEKRDGFMQELVDEP 4222

4223 RRRMGNNKSCFSNERNYKTMIEVLLTLQESEPEYYKDETIKDLMV 4357 (0)

4700 VLLSAGTDTTAGTVEWALSLLLNNPLILKKAQNEIDKVVGQDRLIDE 4840

4841 SDVAKLPYLHCVIKETMRMYPVGPLLVPHESSEECVVGGFQIPRGTMLLV 4990

4991 NIWAIQNDPKIWDDAAKFKPERFDGSEGVRDGFKLMPFGSGRRSCPGEGL 5140

5141 AMRMAGLTLGSLLQCFEWDRVSQEMVDLTEGTGLSMPKAQPLLARCTSRP 5290

5291 SMANLLSQI* 5320

>CYP81B6P

scaffold_1047 (+) 8471-9091

eugene3.10470002|Poptr1

exon 2 only

81D like duplicate seq

100% to scaffold_1047  (+) 3473-5320

$

8471 VLLSAGTDTTAGTVEWALSLLLNNPLILKKAQNEIDKVVGQDRLIDE 8611

8612 SDVAKLPYLHCVIKETMRMYPVGPLLVPHESSEECVVGGFQIPRGTMLLV 8761

8762 NIWAIQNDPKIWDDAAKFKPERFDGSEGVRDGFKLMPFGSGRRSCPGEGL 8911

8912 AMRMAGLTLGSLLQCFEWDRVSQEMVDLTEGTGLSMPKAQPLLARCTSRP 9061

9062 SMANLLSQI* 9091

>CYP81B7

LG_XIV (-) 930738-928767

eugene3.00140107|Poptr1

gene model seems correct

81D like 51% to 81D8

93% to scaffold_40  (+)  2691314

$

930738 MATLILYFPVILALYIITSHFLDKIRNFPPGPFPSLPIIGHLYLLKKPIY 930589

930588 RTLSKISSKHGPVLLLQLGSRRLLVVSSPSIAEECFTKNDVVFANRPRLL 930439

930438 IAKHLAYNSTSLVWAPYGDHWRNLRRIVSIEVLSAYRLQMLSAIRLEEVK 930289

930288 SMVCVLFRNQKHTVDMKTVFFELTLNIMMRMIAGKRYYGENVSDVEEAKR 930139

930138 FRALHAESFLLGGKTIIGDYIPWIKSKKMEKRLIECNLKRDSFLQCLIEE 929989

929988 QRRKILEGDCCGEKKKNLIQVLLSLQETEPEYYTDDIIKGLVV 929860 (0)

929387 VILFAGTDTSSTTMEWALSLLLNHPEVLEKAKREIDEHIGHDRLMDEGDL 929238

929237 AQLPYLRSILNETLRMYPPAPLLVPHESSEECLVGGFRIPRGTMLSVNMW 929088

929087 AIQNDPKIWRDPTKFRPERFDNPEGGRYEFKLMPFGHGRRSCPGEGLALK 928938

928937 VVGLALGSLLQCFEWQKIGDKMVDMTESPGFTVPKAKQLEAICRARPRML 928788

928787 TLLSQI* 928767

>CYP81B8P1

scaffold_40 (+) 2662475-2663606

no model

no comment

81D like pseudogene N-term

73% to LG_IIc  (-)  9152501

$

2662475 YYYFLLFLMFRVLSKHLRKINKNLPPSPGLSLPITGHLYLIKKPLRQTLA 2662624

2662625 NLSN

        QYGPILF

        IKFGSRTVILV*SPSVAGEC 2662717

        GIILANLPRLVGP

2662762 GKHLGYIYTTLAWASYGKHWRNLRRISALEILSTNRLQMFCHIRAH 2662899

        RRLYKGSKGGEFMTN

2662947 DAKSTFFYLTLDVIMRMIAGKRYHGENPAELGESRKVKEIVTETFELSGA 2663096

2663097 TNTGDFVPVLKWFEMNHNEKRLAVLHSKRDKFLQDLIEAHRKVKDES 2663237

        ASDQGSG*

2663262 TTIDILLALQETEPEFYTYEIIRGMMT 2663345 (0)

2663366 RRSCPEKGLALCMVGLTLES 2663425

2663428 FEWERVSEEMAGMTEGIGLSMPRAHPLLAKCRLCPSMVSLLSRI 2663559

>CYP81B9P

scaffold_40 (+) 2666003-2667947

fgenesh1_pg.C_scaffold_40000328 [Poptr1:94216]

model short (2 genes fused?)

81D like pseudogene, one frameshift

98% to scaffold_40  (+)  2687031

91% to LG_XIV       (-)   929000 with one frameshift

$

2666003 MATLFLYFPVFLALYIISTHFLNKIRNFPPSPFPSLPIIGHLYLLKKPLY 2666152

2666153 RTLSKISDKHGPVILLQLGSRRQLVVSSPSIAEECFTKNDVVFANRPRLL 2666302

2666303 IAKHLAYNSTSLVWAPYGDHWRNLRKIVSIEVLSAYRLQMLSSIRLEEVR 2666452

2666453 SMICVLFRNQNQ 2666488

2666488 VVDMRTVFFELTLNIMMRMIAGKRYYGENVSDVEEAKRFRAIHAESFLLG 2666637

2666638 GKTIIGDYIPWIKSKEMEKRLIECNLKRDSFLQCLIEEQRRKILEGDCCG 2666787

2666788 EKKKNLIQVLLSLQETEPEYYTDDIIKGLVV 2666880 (0)

2667327 VILLAGTHTSSSTMEWALSLLLNHPQVLEKAKREIDEHIGHDRLMDEADL 2667476

2667477 AQLPYLRSILNETLRMYPAAPLLVPHESSEECLVGGFRIPRGTMLSVNVW 2667626

2667627 AIQNDPKIWRDPTKFRPER 2667683

2667684 FDNLEGGRDEFKLMPFGHGRRSCPGEGLALRVVGLALGSLLQCFEW 2667821

2667822 QKIGDKMVDMTEASGSAISKAQPLKAICRARPSMLTHLSQI* 2667947

>CYP81B-se1[2]

scaffold_40 (+) 2671685-2672180

no model

no comment

81D like pseudogene exon 2 only

$

2671685 VILLAGTHTSSSTMEWALSLLLNHPQVLEKAKREIDEHIGHDRLMDEADLAQ 2671840

2671842 LPYLRSILNETLRMYPAAPLLVPHESSEECLVGGFRIPRGTMLSVNV 2671982

2671983 WAIQNDPKIWRDPTKF 2672030

2672031 RPERFDNLEGGRDEFKLMPFGHGRRSCPGEGLALRVVGLALGSLLQCFEW 2672180

2672181 QKIGDKMVDMTEASGSAISKAQPLEAICRARPSMLTHLSQI 2672303

>CYP81B8P2

scaffold_40 (+) 2676659-2676886

no model

no comment

81D like N-term frag.

100% match to scaffold_40   (-)  2662499

$

2676659 YYYFLLFLMFRVLSKHLRKINKNLPPSPGLSLPITGHLYLIKKPLRQTLA 2676808

2676809 NLSN

QYGPILF

IKFGSRTVILV*SPS 2676886

>CYP81B10

scaffold_40 (+) 2684818-2685009

fgenesh1_pg.C_scaffold_40000329 [Poptr1:94217]

model short (N-term in a sequence gap)

81D like N-term frag.

scaffold_40   (+)  2685841-2687264          81D like

98% to scaffold_40     (+)  2667714

$

2684818 MATLFLYFPVFLALYIISTHFLNRIRNFPPSPLPSLPIIGHLYLLKKPLY 2684967

2684968 RTLSKISDKHGPVI 2685009

2685841 LNIMMRMIAEKRYYGGNVSDVEEAKRFRAIHAESFLLGGKTIIGDYIPWI 2685990

2685991 KSKEMEKRLIECNLKRDSFLQCLIEEQRRKILEGDCCGEKKKNLIQVLLS 2686140

2686141 LQETEPEYYTDDIIKGLVV 2686197 (0)

2686644 VILLAGTHTSSSTMEWALSLLLNHPQVLEKAKREIDEHIGHDRLMDEADL 2686793

2686794 AQLPYLRSILNETLRMYPAAPLLVPHESSEECLVGGFRIPRGTMLSVNVW 2686943

2686944 AIQNDPKIWRDPTKFRPER 2687000

2687001 FDNLEGGRDEFKLMPFGHGRRSCPGEGLALRVVGLALGSLLQCFEW 2687138

2687139 QKIGDKMVDMTEASGSAISKAQPLEAICRARPSMLTHLSQI* 2687264

>CYP81B-se2[1]

scaffold_40 (+) 2689865-2690096

no model

no comment

N-term

$

2689865 PPRPFPSPPVTGHLYLH*KSIYWT 2689936

2689938 LSKFACQHGPAILLTFGSRRALSDSSPSIAEQCFT 2690042

2690043 NLAWPPRGDCWRKLRKIL 2690096

>CYP81B11

scaffold_40.6 (+) 2691314-2693223

fgenesh1_pg.C_scaffold_40000330 [Poptr1:94218]

gene model short, 2 frameshifts

81D like 51% to 81D8

94% to LG_XIV      (-)   929000

$

2691314 MATLILYFLVILALYIITRHFLT 2691382

2691382 KIRNFPPGPFPSLPIIGHLYLLKKPIYRTLSKISSKHGPVILLQLGSRR 2691528

2691529 LLVVSSPSIAEECFTKNDVVFANRPRLLIAKHLAYNSTSLVWAPYGDHWR 2691678

2691679 NLRRIVSIEVLSAYRLQMLSAIRLEEVKSMICVLFRNQKQIVDMKTVFFE 2691828

2691829 LTLNIMMRMIAGKRYYGESVSDVEEAKKFRAIHAETFLIGGKTIIGDYIP 2691978

2691979 WIKSKKMEKRMIECHIKRDSFMQYLIEEQRRKILESDCCGEKKTNLIQVL 2692128

2692129 LSLQETEPEYYTDDIIKGIML 2692191 (0)

2692602 VLLLAGTDTSSTTMEWALSLLLNHPEVLEKAQREIDEHIGHDRLMDEGDLAQ 2692757

2692759 LPYLRSILNETLRMYPPAPLLVPHESSEECLVGGFRIPRGTMLSVNV 2692899

2692900 WAIQNDPKIWRDPTKFRPER 2692959

2692960 FDNLEGGRYEFKLMPFGHGRRSCPGEGLALKVVGLALGSLLQCFEW 2693097

2693098 QKIGDKMVDMTESPGFTVPKAKQLEAICRARPRMLTLLSQI* 2693223

>CYP81B-se3[1]

scaffold_40 (+) 2695016-2695445

no model

no comment

81D like N-term frag.

$

2695016 LLFSVFLGLYIITKHFLNEIQNLPPSPFPS 2695105

2695359 QPSFAAAKHLAYNCTNFAGPPYGDYW*NV 2695445

>CYP81B12

scaffold_40.7 (+) 2698671-2700987

fgenesh1_pg.C_scaffold_40000331 [Poptr1:94219]

bad boundary, gene model too long

81D like 51% to 81D8

88% to LG_XIV      (-)   929000

$

2698671 MATFFLHFSVFLALYIITRHFLNKIRNFPPSPFPSLPIIGHLYLLKKPIY 2698820

2698821 RALSKISSKHGPVILLQLGSRRQLVVSSPSIAEECFTKNDVVFANRPGYL 2698970

2698971 IAKHLAYNTTGLLWAPYGDHWRNLRRIVSIEVLSAYRLQMLSSIRLEEVR 2699120

2699121 SMICVLFRNQNQIVDMKTVFFELTLNIMMRMIAGKRYYGEDVSDVEEAKR 2699270

2699271 FRAIHAETLLLGGKTIIGDYVPWIKSKKMLKRVIECHLKSDSFMQYLIEE 2699420

2699421 QRRKILESDCCGEKKRNLIQVLLSLQENEPGYYTDDIIKGIML 2699549 (0)

2700385 VLLLAGTDTSSATMEWALSLLLNHPRVLEKAQREIDEHIGHDRLMDEGDL 2700534

2700535 AQLPYLRSILNETLRMYPPAPLLIPHESSEECLVGGFRIPRGTMLSVNMW 2700684

2700685 AIQNDPKIWPDPTKFRPERFDNPEGARDGFKLMPFGHGRRSCPGEGLALK 2700834

2700835 VVGLALGSLLQCFKWQKISDKMVDMTEGPGFTSTKAQPLEAI*RPRPSMHT 2700987

>CYP81B12-de2b

scaffold_40 (+) 2701996-2702187

no model

no comment

81D like 84% to 40.7

$

2701996 PGEGSALRVVGLALGSLLQCF*WQKIGDKMVDMTESPGFTALKAKPLEAI 2702145

2702146 CRPRPSMLGHISQI 2702187

>CYP81B13P

scaffold_10588 (+) 2-1138

eugene3.105880001|Poptr1

no comment

81D like runs off the end

89% to scaffold_40  (+)  2687031

$

   2 EPEYYTDDIIKGLVV (0) 46

 518 VILFAGTHTSSTTMEWALSLLLNHPEVLEKAKREIDEQIG 637

 638 HDRLMDEADLAQLPYLRSVLNETLRMYPAAPLLVPHESSEECLVGGFRIPR 790

 791 GTMLSVNVWAIQNDPKIWRDPTKFRPERFDN 883

 884 PEVARDGFKLMPFGYGRRSCPGESMALRVMGLALGSLLQCFEWQKIGDKMVDMTE 1048

1049 ASGFTIPKAKPLKVICRPRPDMLRHLS* 1138

>CYP81C3

scaffold_40.4 (-) 2639518-2637241

fgenesh1_pg.C_scaffold_40000322 [Poptr1:94210]

gene model seems correct

81D like 45% to 81A7

3 aa diffs to scaffold_40   (-) 2633172

$

2639518 MEFLYYHLALLFFLFIVVKNLFHRKRNLPPAPFALPVIGHLYLLKQPLYK 2639369

2639368 SLHALLSRYGPALSLRFGSRFVIVVSSPSVVEECFTKNDKIFANRPKSMA 2639219

2639218 GDRLTYNYSAFVWAPYGDLWRKLRRLAVAEIFSSKSLRKSSTVREEEVSC 2639069

2639068 LIRRLLKVSTSGTQNVELRLLFSILASNVVMIVSAGKRCVEEEHAGTKME 2638919

2638918 KQLFQDFKDKFFPSLAMNICDFIPILRVIGFKGLEKNMKKLHGIRDEFLQ 2638769

2638768 NLIDEIRLKLKKTTSLKTDEVTDGEERRSVAEILLCLQESEPEFYTDEVI 2638619

2638618 KSTVL 2638604 (0)

2637858 MMFIAGTETSAITLEWAMTLLLNHPKVMQKVKAEIDEHVGHGRLLNESDI 2637709

2637708 VKLPYLRCVINETLRLYPPAPLLLPHFSSEACTAGGFDIPQGTMLVVNAW 2637559

2637558 TMHRDPKLWEEPNEFKPERFEAGLGEGDGFKYIPFGIGRRVCPGASMGLQ 2637409

2637408 IVSLALGVLVQCFEWDKVGTVEDTSHGLGMILSKAKPLEALCSPRRDLIT 2637259

2637258 LLSHL* 2637241

>CYP81C4

scaffold_40.3 (-) 2633172-2630892

fgenesh1_pg.C_scaffold_40000321 [Poptr1:94209]

gene model seems correct

81D like 45% to 81A7

3 aa diffs to scaffold_40   (-)  2637726 duplicate seq

$

2633172 MEFLYYHLALLFFLFIVVKNLFHRKRNLPPAPFALPVIGHLYLLKQPLYK 2633023

2633022 SLHALLSRYGPALSLRFGSRFVIVVSSPSVVEECFTKNDKIFANRPKSMA 2632873

2632872 GDRLTYNYSAFVWAPYGDLWRKLRRLAVAEIFSSKSLRKSSTVREEEVSC 2632723

2632722 LIRRLLKVSTSGTQNVELRLLFSILASNVVMIVSAGKRCVEEEHAGTKME 2632573

2632572 KQLFQDFKDKFFPSLAMNICDFIPILRVIGFKGLEKNMKKLHGIRDEFLQ 2632423

2632422 NLIDEIRLKLKKTTSLKTDEVTDGEERRSVAEILLCLQESEPEFYTDEVI 2632273

2632272 KSTVL 2632258 (0)

2631509 MMFVAGTETSAITLEWALTLLLNHPKVMQKVKAEIDEHVGHGRLLNESDI 2631360

2631359 VKLPYLRCVINETLRLYPPAPLLLPHFSSEACTAGGFDIPQGTMLVVNAW 2631210

2631209 TMHRDPKLWEEPNEFKPERFEASLGEGDGFKYIPFGIGRRVCPGASMGLQ 2631060

2631059 IVSLALGVLVQCFEWDKVGTVEDTSHGLGMILSKAKPLEALCSPRRDLIT 2630910

2630909 LLSHL* 2630892

>CYP81C5

LG_IIa (+) 9173256-9175652

fgenesh1_pg.C_LG_II001124 [Poptr1:347618]

gene model seems correct

81K like 51% to 81K1

72% to scaffold_40  (-)  2637726

$

9173256 MESLYHHLALLFFLFLVVKILFRQKQNLPPSPFALPIIGHLHLFKHPQSL 9173405

9173406 QTLSSQYGPILFLKFGCRSTLVVSSPSAVEECFTKNDIIFANRPQSMAGD 9173555

9173556 HLTYNYTGFVWAPYGHLWRSLRRISVIEIFASKSLQKSSIIREEEVCSLL 9173705

9173706 RRLLKAKNGVTAKVDLKFLFSLLTCNVMMRLAAGKPCIDEEVAGTKVEKQ 9173855

9173856 LFQEFKERFSPGLGMNICDFIPILRLIGYKGLEKSTKKLQSTRDKYLQHL 9174005

9174006 IDEIRMRRTSSSSKTAEQWKREGKSSVIETFLSLQDLEPEFLTDTVIKSV 9174155

9174156 LS 9174161 (0)

9175035 MMFVAGTETSAVTLEWAMALLLNHPKAMQKLKAEIDEHVGHGRLLN 9175172

9175173 ESNIVKLPYLRCVIKETLRLYPPAPLLLPHFSSGACTVGGFDIPQGTTLV 9175322

9175323 VNAWAMHRDPKLWEESNEFKPERFEAGLGEQEGFKYIPFGTGRRVCPGAS 9175472

9175473 MGLQMVSIALGALVQCFEWDKVAPVEDMSHSPGISLSKVKPLEALCCPRG 9175622

9175623 DLTTLLYHP* 9175652

>CYP81R1P

scaffold_64 (-) 903647-903045

eugene3.00640126|Poptr1

gene model wrong

81K like pseudogene 37% to 81K2 aa107-293

86% to scaffold_64   (-)   863860

$

903647 SYSYTAFLFAP 903615

903607 YGHLWRTPRRFSVSELFSRGCLDWSTAITEEVRTLLRLILSKVSDDRAKK 903458

903457 VDLNYFFTITSLNVIMKMNAGKKRVEEEKAACIDSEKQCIEDVQKIFPSNPGTSL 903293

903292 LDFFPILKWIGYNGDIEESTVI 903227

903227 KERDEFLQGLIEEVKRKETSS 903165

903162 DTSNTEEVKDQTTVIG 903115

903113 SLLALQKSDPELFTDVVVKGTAI 903045

>CYP81R2

scaffold_64 (-) 881364-879605

eugene3.00640125|Poptr1

gene model seems correct

81K like 43% to 81K1

2 aa diffs to scaffold_64    (-)   863860 duplicate seq

92% to scaffold_279  (-)    94272

$

881364 MNYMYYCLAFFLSSFLVFKLVFQRSRNLPPSPFGFPIIGHLHLVSKPPMH 881215

881214 KVLAILSNKCGPVFTLKLGSRNIVAVCSLSAAEECYIKNDIVFANRPQSI 881065

881064 FVHYWSYNYAAFLFAPYGHLWRTLRRFSVTELFSRSCLDRSAAISEEVRT 880915

880914 LVRLILSKVSDDGAKKVDLNYFFTITSLNVIMKMNAGKKWVEEEKAACID 880765

880764 SGKQCIEDVQKIFPSNPGTTVLDFFPFLKWFGYRGEEESVIKVYKERDEF 880615

880614 LQGLIEEVKRKETSSVTSNPAEGVKDQTTVIGSLLALQKSDPELYTDEVV 880465

880464 KGTMA 880450 (0)

880228 TLYLAGVDTVDFTTEWAMTFLLNHPERLERVKAEIDREVGHERLVQESDL 880079

880078 PKLRYVRCVVNETLRLYPPAPLLLPHAPSEDCIVGGYKIPRGTIVMVNAW 879929

879928 AIHRDPKLWEDPESFKPERFEGLNNEGEKQGFIPFGIGRRACPGNHMAMR 879779

879778 RVMLALAALIQCFEWERVGKELVDMSIVDALISVQKAKPLEAICTPRPFT 879629

879628 TTLISPP* 879605

>CYP81R1

scaffold_64a (-) 865374-863615

eugene3.00640122|Poptr1

gene model seems correct

81K like 41% to 81K1

2 aa diffs to scaffold_64   (-)   879850 duplicate seq

$

865374 MNYMYYCLAFFLSSFLVFKLVFQRSRNLPPSPFGFPIIGHLHLVSKPPMH 865225

865224 KVLAILSNKCGPVFTLKLGSRNIVAVCSLSAAEECYIKNDIVFANRPQSI 865075

865074 FVHYWSYNYAAFLFAPYGHLWRTLRRFSVTELFSRSCLDRSTAISEEVRT 864925

864924 LVRLILSKVSDDGAKKVDLNYFFTITSLNVIMKMNAGKKWVEEEKAACID 864775

864774 SGKQCIEDVQKIFPSNPGTTVLDFFPFLKWFGYRGEEESVIKVYKERDEF 864625

864624 LQGLIEEVKRKETSSVTSNPAEGVKDQTTVIGSLLALQKSDPELYTDEVV 864475

864474 KGTMA 864460 (0)

864238 TLYLAGVDTVDFTAEWAMTFLLNHPERLERVKAEIDREVGHERLVQESDL 864089

864088 PKLRYVRCVVNETLRLYPPAPLLLPHAPSEDCIVGGYKIPRGTIVMVNAW 863939

863938 AIHRDPKLWEDPESFKPERFEGLNNEGEKQGFIPFGIGRRACPGNHMAMR 863789

863788 RVMLALAALIQCFEWERVGKELVDMSIVDALISVQKAKPLEAICTPRPFT 863639

863638 TTLISPP* 863615

>CYP81R6

scaffold_279 (-) 96174-94443

eugene3.02790010|Poptr1

gene model seems correct

81D like 43% to 81K1 43% to 81A6

92% to scaffold_64   (-)   879850

$

96174 MDYMYYCLAFFLSSFLVFKLVFQRSRNLPPSPFRFPIIGHLHLVTKPPMH 96025

96024 KVLAILSNKCGPIFTLKLGSKNIVAVCSLSAAEECFLKNDIVFANRPQSI 95875

95874 FFHYWSYNYAAFLFAPYGHLWRTLRRFSVTELFSRSCLDRSTAITEEVRT 95725

95724 LLRLILSKVSDDGAKNVDLNYFFTITSLNVIMKMIAGKKWVEEEKAACID 95575

95574 SGKQCLEDVQKIFPSNTGTILKWVGYKVKEESVIKVFKERDEFLQGLIEEVKRKETSSVTSNPA 95383

95382 AEGVKDQKTVIGSLLALQKSDPELYTDEVVKGTMA 95278 (0)

95066 TFYLAGVDTVDFTTEWAMTFLLNHPERLERVKAEIDREVGHERLVQESDL 94917

94916 PKLRYLRCVVNETLRLYPPAPLLLPHAPSEDCTIGGYEIPRGTIVMVNVW 94767

94766 AIHRDPKLWEDPESFKPERFEGLNNEGEKQGFIPFGIGRRACPGNHMAMR 94617

94616 RVMLALAALIQCFEWERVGQELIDMSIVKALISVQKAKPLEATCTPRPFT 94467

94466 TSLISPP* 94443

>CYP81R6-de2b

scaffold_279 (-) 99748-99595

eugene3.02790011|Poptr1

pseudogene

PKG-PERF region of 81 like

78% to scaffold_64   (-)   879850

$

99748 SPLLLPHAPSEDCIVGGYKIPRGMIVMVSVWA 99653

99651 VHRDPKSWEGSESFKLEKY 99595

>CYP81R4

scaffold_40.2 (-) 2629530-2627051

fgenesh1_pg.C_scaffold_40000320 [Poptr1:94208]

model has 2 genes fused?