17 Arabidopsis partial sequences (4 ESTs and 13 GSSs) 11 of these probably are poor quality versions of known genes. Last modified Dec 18, 2000. D. Nelson >AI993108 701495348 91% to 71B18 nuc seq matches 94% NIFLGRIDTGALTMIWAMTELARNPGVMKKVQGEIRDRLRRNKERVTEEDNNKVPYLNLV VKETFRLHYPVPLLLPRETMAHIKVQGYDIPPKRRILVNAWAIGRDPKLWTNPREFDPGR FIDSPVDYKGQHFELLPFGSGR >AI993723 701497314 91% to 72A13 C-term TLPGGVQLTLPILLIQRDRDLWGNDAGESKPDRLKDGLSKATKNQVSFFPFAWXPRTCIG QNFALLEAKMAMTLILRKFSFELSPSYVHAPYTVLTTHPQFGAQLMLHKL* >AW004264 701669957 89% to 72A15 C-term best match 94% nuc seq to 72A15 QHDIELWGNDAAEVKPDRVKDGLSKATKSQVSFFPFAWGPRICIGQNFALLEAKRARALI LRRFSFEISPS*CHAPDTGITSHPQFGAQLIMHKR* >B09868 GSS fragment aa 157-207 mid region like 86A BAC clone T16G9 opposite end = B12880 (no match in NR) RLRQARGRGVDRGXXIRLCRVRARVQDKAEPCDVQELVERVTLDDICGLAFGKERGTWLR GYPESG >B12879 GSS fragment mid region aa 142-218 similar to 86A BAC clone T16G4 opp end = B09271 no match in NR TVRHPGVRWTNGGSKIRVGDILATDEDNAGPDDLQEILIGLTLDDMRRLALCEDTGTCAR GHPENGDASALDXATSA >B67502 BAC clone T24M9 (opposite end = B26975)and B26976 GSS fragments B26976 is from same BAC and same end C-helix region like 97B3 FSYDKGLVAEVSQFLFGDGFAVAGGDRWKARRKAVGPSLHR The following sequences are probably identified >H36457 EST extreme C-terminal of 98A-like sequence probably = 98A9 (2 amino acid differences) WSPPVPGERIDMXQXPGLLCNMRTPLQALALPRXPQXQYLYNKFQSM >B12886 GSS fragment N-terminal probably 708A1 MNNLHSLDXMKKMWGVALIXVIXLVVVKISLXLYKWANXXXXXXLTPSSMGFPVIGKXVEFFKPYSF 885 >B98666 GSS fragment 92% identical to 96A4 N-terminal 7 diffs this probably is 96A4 MAMIIGLLEIFIAFMFVFVCQCFSLHKKTPKHMVMNWPVRGMLPGVLFQIRRIYDFATEA LEAENMTGCFIGPWLSGTDILLTVDPVNMXYILSSNFVNYPKGKKFNKIFE >B11817 GSS FRAGMENT N-TERMINAL LIKE CYP88 8 diffs in a poor quality seq with frameshifts. This seq is probably CYP88 MAETTNWIPVWFPLMVLGCFGLNWLVTKVNVWLYDSTLGETRHYLQPVELGWPFIGNMLS FLRAFK >B21125 GSS fragment very similar to 71B28 BAC clone T32B12 opposite end of BAC = B20387 this nt seq matches F13K23 at 88% F13K23 is the adjacent BAC clone to F3F19 where 71B28 is located. The nt seq of B21125 matches 71B28 by 96% so this is probably 71B28. PSKWKFPPGPXELPIIXNLHQRRDLHPRTVRDLSEKYGPIVFLRYGIVPVVVISSKEAAE EVLKTHDLECCSRPETVGPRAISYNFKDIGFAPYGEDWRTMRKLSVVELISSKK >B19924 GSS SP6 fragment from BAC T11A9 opposite end = B20082 this nuc seq matches T24D18 at 99%. T24D18 is adjacent to F3O9 where 79F1 is located. Two other sequences from T11A9 = AL093100 AL093101 = SP6 end of T11A9 matches F309 100% 70% identical to B61499 79% identical to 79F1 This sequence is probably a poor version of 79F1 FCIAAIDXPAHNMEWTLGEMLXKPEIFRKALEELDEVVWRDRLVPESRHTNSFY >B19916 GSS fragment like CYP86A from BAC clone T9M21 opposite end = B20137 nuc seq of opposite end DNA is 93% to BAC T6J4 (adjacent to F3F19 where 86C3 and 86C4 are found. Best match of B19916 nt seq is F3F19 in the 86C4 seq This is probably a poor quality 86C4 GLLKEEEEFWKGQERIIITGMHSPGFVEHPFQTTPHLVRKELLKVMESFAKSXEAFDLQD VFLRLTFDIICLAVXGADPETLAIDLP >B09878 GSS fragment N-terminal 14 differences with CYP708A1 but this is a poor quality seq with many frameshifts. It may be 708A1 BAC clone T17B6 opposite end = B11188. This nuc seq matches F20N2 98% (adjacent clone to F14J16 where 708A1 is located. This is probably 708A1 MNNLHSLEYMKEMWGVAPSSVIXLVVVKIHLWLYRWANPNCSGKLTQGSMGFPVIGXTVE FFQTYHFNKNHPFVQKRIFSR >B13024 GSS fragment similar to 708A1 BAC T29G23 opposite end = B08684 This nuc seq matches (340bp) 99% to F20N2 adjacent BAC to 708A1 This is probably 708A1 MNNLISLDIMKEMWGVALSFVIPLMVVKISLWVYKGANPNCSRKLPPGSMGFPVIG*TVE FLQPLTFNEIHPFVKTRIFXRPRGSLFRKN >B09869 GSS fragment N-TERM to mid region CYP86A-like 86a4 only 2 diffs from RTLRQ on BAC clone T16I7 opp end = B12024 (no seq match in Genbank) This is probably 86A4 RMQDWITETLRGGGGTYRTCFLPGPFLGXKQGLVTVNVEPRNLEHMFKTRFDNTLKVLTC NPFFHDLLVQGIFNSDRDTWFFQRKTAAVEFTT (130bp intron) RTLRQAMGRWVNRGIKLRFCPILATAQ DNAEPVDLQDLIXRLTFDNICGLAFGKDTRTCAPGLPENGFASAFDRATEASLQRFVIPK FMWKLKKWLKLGLEVSLSRS >B11581 GSS FRAGMENT PROBABLE CYP88 PSEUDOGENE BAC F25F21 opposite end = B08973 this nuc seq matches F13M7 98% (two clones away from 88A3. This is probably a poor seq version of CYP88A3 KEVFLR*VVDKTLRVITFSLTAFRKAKTDVEMNG*LIPNGWNVLTWF*DVPLDPEVWPNS REFDPARWEDGVLYQTRVRXLPLGAGSHLLPGI*SGPRSNISIFLHHFSPQY